Wall clock time and date at job start Wed Apr 1 2020 03:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21271 * 119.99897 * 2 1 4 4 N 1.34778 * 119.99839 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99993 * 180.02562 * 4 2 1 6 6 C 1.54159 * 111.79558 * 299.22518 * 5 4 2 7 7 C 1.54849 * 104.32330 * 261.29579 * 6 5 4 8 8 C 1.54845 * 102.73279 * 321.81533 * 7 6 5 9 9 C 1.54157 * 104.32506 * 38.18310 * 8 7 6 10 10 H 1.08998 * 111.79995 * 99.63906 * 9 8 7 11 11 C 1.54322 * 108.86859 * 223.67773 * 9 8 7 12 12 N 1.48529 * 104.67724 * 137.48975 * 11 9 8 13 13 C 1.46904 * 111.00033 * 200.81161 * 12 11 9 14 14 C 1.50703 * 109.47128 * 69.87167 * 13 12 11 15 15 C 1.38294 * 119.92983 * 90.00153 * 14 13 12 16 16 C 1.38096 * 120.06969 * 179.97438 * 15 14 13 17 17 C 1.38887 * 119.92909 * 359.97438 * 16 15 14 18 18 O 1.35746 * 120.06604 * 180.02562 * 17 16 15 19 19 C 1.34833 * 117.00531 * 5.54199 * 18 17 16 20 20 H 1.07995 * 119.99437 * 354.94399 * 19 18 17 21 21 C 1.38650 * 120.00178 * 174.66237 * 19 18 17 22 22 N 1.31555 * 119.99956 * 0.28234 * 21 19 18 23 23 Si 1.86799 * 120.00030 * 180.27275 * 21 19 18 24 24 H 1.48502 * 109.46727 * 60.00755 * 23 21 19 25 25 H 1.48505 * 109.47357 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47502 * 300.00646 * 23 21 19 27 27 C 1.38871 * 119.86145 * 0.28182 * 17 16 15 28 28 C 1.38107 * 119.92971 * 359.46603 * 27 17 16 29 29 C 1.48535 * 104.21101 * 320.35907 * 12 11 9 30 30 H 1.09003 * 109.47157 * 269.99529 * 1 2 3 31 31 H 1.08995 * 109.47432 * 29.99973 * 1 2 3 32 32 H 1.09008 * 109.47197 * 149.99952 * 1 2 3 33 33 H 0.97003 * 120.00258 * 359.97438 * 4 2 1 34 34 H 1.09002 * 110.46848 * 142.58394 * 6 5 4 35 35 H 1.09000 * 110.56910 * 20.05411 * 6 5 4 36 36 H 1.09001 * 110.75989 * 203.50655 * 7 6 5 37 37 H 1.09000 * 110.75863 * 80.12407 * 7 6 5 38 38 H 1.09006 * 110.46435 * 279.47400 * 8 7 6 39 39 H 1.09000 * 110.57068 * 156.94911 * 8 7 6 40 40 H 1.09008 * 110.39515 * 18.68919 * 11 9 8 41 41 H 1.08997 * 110.49566 * 256.34234 * 11 9 8 42 42 H 1.08999 * 109.46946 * 309.87286 * 13 12 11 43 43 H 1.08993 * 109.46963 * 189.87348 * 13 12 11 44 44 H 1.08005 * 119.96959 * 359.97438 * 15 14 13 45 45 H 1.07998 * 120.03684 * 179.97438 * 16 15 14 46 46 H 0.97000 * 120.00014 * 179.97438 * 22 21 19 47 47 H 1.07995 * 120.03647 * 179.71990 * 27 17 16 48 48 H 1.07999 * 119.96577 * 180.27627 * 28 27 17 49 49 H 1.08996 * 110.39616 * 158.43725 * 29 12 11 50 50 H 1.08999 * 110.39694 * 280.84664 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1673 0.0000 6 6 4.2187 -0.4676 -1.2484 7 6 4.5721 -1.6287 -2.2100 8 6 5.1207 -2.7123 -1.2495 9 6 4.2234 -2.6046 -0.0006 10 1 3.4465 -3.3691 0.0068 11 6 5.1113 -2.6768 1.2595 12 7 4.5655 -1.6334 2.1647 13 6 5.5613 -1.2337 3.1682 14 6 6.6702 -0.4650 2.4970 15 6 6.5810 0.9097 2.3748 16 6 7.5957 1.6171 1.7608 17 6 8.7069 0.9465 1.2662 18 8 9.7062 1.6392 0.6626 19 6 9.6142 2.9843 0.6769 20 1 8.7336 3.4609 1.0815 21 6 10.6526 3.7556 0.1776 22 7 11.7252 3.1749 -0.3153 23 14 10.5283 5.6192 0.2044 24 1 10.3776 6.0850 1.6064 25 1 11.7596 6.2060 -0.3829 26 1 9.3488 6.0483 -0.5893 27 6 8.7910 -0.4344 1.3857 28 6 7.7753 -1.1356 2.0055 29 6 4.2372 -0.5016 1.2605 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8899 -0.5138 32 1 -0.3634 -0.8900 -0.5139 33 1 1.6958 -2.0073 -0.0005 34 1 5.1133 0.0995 -0.9908 35 1 3.4710 0.1855 -1.6984 36 1 5.3374 -1.3209 -2.9226 37 1 3.6820 -1.9862 -2.7277 38 1 6.1590 -2.5030 -0.9920 39 1 5.0324 -3.7019 -1.6980 40 1 6.1484 -2.4559 1.0067 41 1 5.0356 -3.6600 1.7239 42 1 5.9729 -2.1228 3.6457 43 1 5.0863 -0.6041 3.9205 44 1 5.7168 1.4306 2.7599 45 1 7.5253 2.6905 1.6652 46 1 12.4515 3.7144 -0.6649 47 1 9.6517 -0.9592 0.9982 48 1 7.8422 -2.2091 2.1028 49 1 3.5008 0.1542 1.7248 50 1 5.1387 0.0566 1.0078 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098665758.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:03 Heat of formation + Delta-G solvation = -30.437001 kcal Electronic energy + Delta-G solvation = -31460.816050 eV Core-core repulsion = 27453.386812 eV Total energy + Delta-G solvation = -4007.429238 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.97992 -39.30769 -38.54114 -36.99862 -35.06321 -33.78967 -32.32881 -30.86510 -30.71594 -30.15410 -29.05977 -27.63826 -25.73382 -25.45893 -24.40400 -22.05057 -21.99976 -21.06992 -20.02387 -19.92525 -19.33181 -18.00018 -17.19904 -16.93298 -16.41217 -15.73191 -15.30094 -15.17128 -14.95831 -14.58841 -14.44103 -14.28925 -13.88822 -13.81802 -13.58276 -13.40819 -12.96527 -12.88908 -12.75796 -12.59139 -12.50678 -12.16091 -11.85281 -11.72662 -11.63860 -11.38739 -11.27989 -11.13711 -11.08207 -10.89565 -10.85101 -10.73511 -10.67135 -10.61419 -10.52216 -10.44097 -9.77147 -9.35908 -9.01505 -8.83576 -8.27517 -8.16742 -7.21078 -6.46877 -4.05681 2.16395 2.24507 2.60939 3.13434 3.13696 3.14273 3.16991 3.96069 4.16555 4.20703 4.46026 4.59732 4.72475 4.77373 4.99288 5.06997 5.16219 5.18469 5.21211 5.23073 5.25051 5.29920 5.40560 5.43111 5.51152 5.58277 5.64345 5.69993 5.76239 5.80721 5.83693 5.87524 5.95522 6.03185 6.03467 6.14432 6.18875 6.21809 6.23856 6.33854 6.37224 6.64167 6.65746 6.84094 6.91829 7.03010 7.12495 7.24021 7.35764 7.41752 7.47843 7.78233 7.98117 8.21030 8.98845 9.67676 10.70877 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012102 B = 0.003235 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.118131 B = 8653.138517 C = 9361.353850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.507 3.493 3 O -0.538 6.538 4 N -0.710 5.710 5 C 0.174 3.826 6 C -0.123 4.123 7 C -0.124 4.124 8 C -0.120 4.120 9 C -0.092 4.092 10 H 0.086 0.914 11 C 0.027 3.973 12 N -0.505 5.505 13 C 0.096 3.904 14 C -0.221 4.221 15 C -0.056 4.056 16 C -0.233 4.233 17 C 0.158 3.842 18 O -0.176 6.176 19 C -0.392 4.392 20 H 0.092 0.908 21 C 0.041 3.959 22 N -0.862 5.862 23 Si 0.940 3.060 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.269 1.269 27 C -0.195 4.195 28 C -0.065 4.065 29 C 0.026 3.974 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.398 0.602 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.105 0.895 45 H 0.126 0.874 46 H 0.271 0.729 47 H 0.115 0.885 48 H 0.109 0.891 49 H 0.079 0.921 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.470 -12.870 0.336 23.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.294 3.706 3 O -0.414 6.414 4 N -0.361 5.361 5 C 0.088 3.912 6 C -0.162 4.162 7 C -0.161 4.161 8 C -0.158 4.158 9 C -0.112 4.112 10 H 0.104 0.896 11 C -0.101 4.101 12 N -0.227 5.227 13 C -0.031 4.031 14 C -0.224 4.224 15 C -0.075 4.075 16 C -0.252 4.252 17 C 0.103 3.897 18 O -0.079 6.079 19 C -0.469 4.469 20 H 0.109 0.891 21 C -0.164 4.164 22 N -0.497 5.497 23 Si 0.764 3.236 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.194 1.194 27 C -0.214 4.214 28 C -0.084 4.084 29 C -0.103 4.103 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.232 0.768 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.123 0.877 45 H 0.144 0.856 46 H 0.081 0.919 47 H 0.134 0.866 48 H 0.127 0.873 49 H 0.098 0.902 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.070 -12.287 0.435 22.690 hybrid contribution 0.398 0.877 -0.316 1.014 sum -18.672 -11.410 0.119 21.882 Atomic orbital electron populations 1.21887 0.92184 1.04539 1.04596 1.20742 0.90357 0.83743 0.75788 1.90762 1.70554 1.31302 1.48820 1.46003 1.06326 1.08461 1.75350 1.21456 0.79197 0.95026 0.95565 1.22717 1.01515 0.97441 0.94504 1.22515 1.00482 0.95545 0.97578 1.22514 0.99565 0.99006 0.94726 1.22669 0.97712 0.95283 0.95504 0.89567 1.23385 0.98030 0.96534 0.92169 1.65854 1.36450 1.08001 1.12420 1.21045 0.89581 0.98367 0.94114 1.19810 0.98501 0.94301 1.09748 1.20631 0.96933 0.93167 0.96795 1.21166 0.95872 1.00759 1.07415 1.19385 0.88396 0.91658 0.90236 1.83973 1.39654 1.20323 1.63953 1.21289 1.04793 0.78010 1.42762 0.89097 1.25282 0.94406 1.00506 0.96190 1.70026 1.06216 1.36366 1.37090 0.85796 0.78201 0.80536 0.79039 1.19447 1.20225 1.19410 1.20182 1.01187 0.91799 1.08234 1.20481 0.92824 0.97890 0.97160 1.23712 1.01100 0.93749 0.91721 0.89024 0.89083 0.90497 0.76771 0.90208 0.90836 0.91209 0.91882 0.90640 0.91493 0.91735 0.90623 0.90921 0.90754 0.87660 0.85589 0.91934 0.86650 0.87333 0.90238 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 10.30 36.01 0.37 -0.81 16 2 C 0.51 5.77 7.01 -10.99 -0.08 5.70 16 3 O -0.54 -8.72 14.62 5.57 0.08 -8.64 16 4 N -0.71 -7.05 5.27 -45.49 -0.24 -7.29 16 5 C 0.17 2.12 0.91 -129.52 -0.12 2.00 16 6 C -0.12 -1.68 5.62 -25.15 -0.14 -1.82 16 7 C -0.12 -1.37 6.90 -24.78 -0.17 -1.54 16 8 C -0.12 -1.24 6.36 -25.15 -0.16 -1.40 16 9 C -0.09 -0.95 3.68 -88.32 -0.32 -1.28 16 10 H 0.09 0.73 7.77 -51.93 -0.40 0.32 16 11 C 0.03 0.31 5.86 -2.23 -0.01 0.30 16 12 N -0.51 -6.66 5.65 -231.53 -1.31 -7.97 16 13 C 0.10 1.34 5.75 -4.97 -0.03 1.31 16 14 C -0.22 -3.70 3.84 -104.58 -0.40 -4.10 16 15 C -0.06 -1.05 7.49 -39.61 -0.30 -1.35 16 16 C -0.23 -5.12 9.17 -39.39 -0.36 -5.48 16 17 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 18 O -0.18 -5.03 9.76 0.05 0.00 -5.03 16 19 C -0.39 -11.06 9.49 30.88 0.29 -10.77 16 20 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 21 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 22 N -0.86 -25.38 13.67 55.48 0.76 -24.62 16 23 Si 0.94 20.80 29.55 -169.99 -5.02 15.77 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 27 C -0.19 -4.05 9.99 -39.40 -0.39 -4.44 16 28 C -0.06 -1.12 8.03 -39.61 -0.32 -1.43 16 29 C 0.03 0.37 4.83 -2.22 -0.01 0.36 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 33 H 0.40 2.74 8.33 -40.82 -0.34 2.40 16 34 H 0.08 1.30 7.18 -51.93 -0.37 0.92 16 35 H 0.07 1.08 6.67 -51.93 -0.35 0.73 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.90 7.18 -51.93 -0.37 0.52 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.84 4.28 -51.92 -0.22 0.62 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.91 8.03 -51.93 -0.42 0.50 16 43 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 44 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 45 H 0.13 2.83 5.64 -52.49 -0.30 2.53 16 46 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 47 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 48 H 0.11 1.57 7.51 -52.49 -0.39 1.18 16 49 H 0.08 1.30 6.83 -51.93 -0.35 0.95 16 50 H 0.08 1.41 3.81 -51.93 -0.20 1.21 16 LS Contribution 385.16 15.07 5.80 5.80 Total: -1.00 -32.53 385.16 -9.78 -42.32 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -7.35 Total: 9.83 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -2.51 Total: -20.18 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: -0.79 Total: -39.88 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.08 Total: -13.67 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.53 -9.78 -42.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098665758.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.882 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds