Wall clock time and date at job start Wed Apr 1 2020 03:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21271 * 119.99897 * 2 1 4 4 N 1.34778 * 119.99839 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99993 * 180.02562 * 4 2 1 6 6 C 1.54159 * 111.79558 * 299.22518 * 5 4 2 7 7 C 1.54849 * 104.32330 * 261.29579 * 6 5 4 8 8 C 1.54845 * 102.73279 * 321.81533 * 7 6 5 9 9 C 1.54157 * 104.32506 * 38.18310 * 8 7 6 10 10 H 1.08998 * 111.79995 * 99.63906 * 9 8 7 11 11 C 1.54322 * 108.86859 * 223.67773 * 9 8 7 12 12 N 1.48529 * 104.67724 * 137.48975 * 11 9 8 13 13 C 1.46904 * 111.00033 * 200.81161 * 12 11 9 14 14 C 1.50703 * 109.47128 * 69.87167 * 13 12 11 15 15 C 1.38294 * 119.92983 * 90.00153 * 14 13 12 16 16 C 1.38096 * 120.06969 * 179.97438 * 15 14 13 17 17 C 1.38887 * 119.92909 * 359.97438 * 16 15 14 18 18 O 1.35746 * 120.06604 * 180.02562 * 17 16 15 19 19 C 1.34833 * 117.00531 * 5.54199 * 18 17 16 20 20 H 1.07995 * 119.99437 * 354.94399 * 19 18 17 21 21 C 1.38650 * 120.00178 * 174.66237 * 19 18 17 22 22 N 1.31555 * 119.99956 * 0.28234 * 21 19 18 23 23 Si 1.86799 * 120.00030 * 180.27275 * 21 19 18 24 24 H 1.48502 * 109.46727 * 60.00755 * 23 21 19 25 25 H 1.48505 * 109.47357 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47502 * 300.00646 * 23 21 19 27 27 C 1.38871 * 119.86145 * 0.28182 * 17 16 15 28 28 C 1.38107 * 119.92971 * 359.46603 * 27 17 16 29 29 C 1.48535 * 104.21101 * 320.35907 * 12 11 9 30 30 H 1.09003 * 109.47157 * 269.99529 * 1 2 3 31 31 H 1.08995 * 109.47432 * 29.99973 * 1 2 3 32 32 H 1.09008 * 109.47197 * 149.99952 * 1 2 3 33 33 H 0.97003 * 120.00258 * 359.97438 * 4 2 1 34 34 H 1.09002 * 110.46848 * 142.58394 * 6 5 4 35 35 H 1.09000 * 110.56910 * 20.05411 * 6 5 4 36 36 H 1.09001 * 110.75989 * 203.50655 * 7 6 5 37 37 H 1.09000 * 110.75863 * 80.12407 * 7 6 5 38 38 H 1.09006 * 110.46435 * 279.47400 * 8 7 6 39 39 H 1.09000 * 110.57068 * 156.94911 * 8 7 6 40 40 H 1.09008 * 110.39515 * 18.68919 * 11 9 8 41 41 H 1.08997 * 110.49566 * 256.34234 * 11 9 8 42 42 H 1.08999 * 109.46946 * 309.87286 * 13 12 11 43 43 H 1.08993 * 109.46963 * 189.87348 * 13 12 11 44 44 H 1.08005 * 119.96959 * 359.97438 * 15 14 13 45 45 H 1.07998 * 120.03684 * 179.97438 * 16 15 14 46 46 H 0.97000 * 120.00014 * 179.97438 * 22 21 19 47 47 H 1.07995 * 120.03647 * 179.71990 * 27 17 16 48 48 H 1.07999 * 119.96577 * 180.27627 * 28 27 17 49 49 H 1.08996 * 110.39616 * 158.43725 * 29 12 11 50 50 H 1.08999 * 110.39694 * 280.84664 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1673 0.0000 6 6 4.2187 -0.4676 -1.2484 7 6 4.5721 -1.6287 -2.2100 8 6 5.1207 -2.7123 -1.2495 9 6 4.2234 -2.6046 -0.0006 10 1 3.4465 -3.3691 0.0068 11 6 5.1113 -2.6768 1.2595 12 7 4.5655 -1.6334 2.1647 13 6 5.5613 -1.2337 3.1682 14 6 6.6702 -0.4650 2.4970 15 6 6.5810 0.9097 2.3748 16 6 7.5957 1.6171 1.7608 17 6 8.7069 0.9465 1.2662 18 8 9.7062 1.6392 0.6626 19 6 9.6142 2.9843 0.6769 20 1 8.7336 3.4609 1.0815 21 6 10.6526 3.7556 0.1776 22 7 11.7252 3.1749 -0.3153 23 14 10.5283 5.6192 0.2044 24 1 10.3776 6.0850 1.6064 25 1 11.7596 6.2060 -0.3829 26 1 9.3488 6.0483 -0.5893 27 6 8.7910 -0.4344 1.3857 28 6 7.7753 -1.1356 2.0055 29 6 4.2372 -0.5016 1.2605 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8899 -0.5138 32 1 -0.3634 -0.8900 -0.5139 33 1 1.6958 -2.0073 -0.0005 34 1 5.1133 0.0995 -0.9908 35 1 3.4710 0.1855 -1.6984 36 1 5.3374 -1.3209 -2.9226 37 1 3.6820 -1.9862 -2.7277 38 1 6.1590 -2.5030 -0.9920 39 1 5.0324 -3.7019 -1.6980 40 1 6.1484 -2.4559 1.0067 41 1 5.0356 -3.6600 1.7239 42 1 5.9729 -2.1228 3.6457 43 1 5.0863 -0.6041 3.9205 44 1 5.7168 1.4306 2.7599 45 1 7.5253 2.6905 1.6652 46 1 12.4515 3.7144 -0.6649 47 1 9.6517 -0.9592 0.9982 48 1 7.8422 -2.2091 2.1028 49 1 3.5008 0.1542 1.7248 50 1 5.1387 0.0566 1.0078 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098665758.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:02 Heat of formation + Delta-G solvation = -53.915711 kcal Electronic energy + Delta-G solvation = -31461.834163 eV Core-core repulsion = 27453.386812 eV Total energy + Delta-G solvation = -4008.447351 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.03223 -40.85060 -39.76047 -38.53038 -36.36743 -34.73279 -34.33801 -32.18795 -31.91241 -31.42525 -30.09542 -28.82698 -27.49173 -26.65654 -25.69163 -23.67430 -23.13871 -22.39835 -21.20019 -20.88337 -20.35848 -19.86327 -18.85741 -18.11537 -17.31732 -16.82338 -16.60140 -16.48116 -16.28505 -16.06064 -15.90159 -15.57761 -15.36915 -15.26220 -14.77926 -14.74277 -14.41824 -14.31893 -13.87727 -13.58739 -13.50908 -13.34926 -13.26190 -13.01515 -12.84556 -12.66750 -12.57414 -12.51494 -12.34037 -12.24107 -12.19281 -12.10693 -11.91375 -11.78927 -11.61665 -11.52232 -11.24782 -10.82955 -10.74562 -10.00069 -9.80523 -9.42121 -8.97278 -8.52585 -6.20843 0.50812 0.59869 1.29890 1.40173 1.45743 1.73217 2.13069 2.30938 2.73062 3.03594 3.18201 3.27005 3.45690 3.53909 3.80422 3.95754 3.99220 4.03156 4.12095 4.18703 4.27082 4.30147 4.39212 4.46854 4.50227 4.52022 4.54424 4.66556 4.69201 4.71206 4.77576 4.84675 4.89181 4.92631 4.94871 5.02168 5.04948 5.08260 5.10458 5.13516 5.17217 5.20913 5.22567 5.42685 5.48625 5.60243 5.65096 5.72207 5.90512 5.97112 6.03280 6.14106 6.69979 6.92002 7.39834 7.71299 8.70139 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012102 B = 0.003235 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.118131 B = 8653.138517 C = 9361.353850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.499 3.501 3 O -0.596 6.596 4 N -0.695 5.695 5 C 0.176 3.824 6 C -0.124 4.124 7 C -0.119 4.119 8 C -0.116 4.116 9 C -0.082 4.082 10 H 0.123 0.877 11 C 0.022 3.978 12 N -0.494 5.494 13 C 0.097 3.903 14 C -0.190 4.190 15 C -0.057 4.057 16 C -0.245 4.245 17 C 0.119 3.881 18 O -0.229 6.229 19 C -0.417 4.417 20 H 0.095 0.905 21 C -0.018 4.018 22 N -0.917 5.917 23 Si 1.014 2.986 24 H -0.258 1.258 25 H -0.266 1.266 26 H -0.261 1.261 27 C -0.202 4.202 28 C -0.051 4.051 29 C 0.029 3.971 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.418 0.582 34 H 0.037 0.963 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.054 0.946 39 H 0.097 0.903 40 H 0.049 0.951 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.080 0.920 44 H 0.120 0.880 45 H 0.110 0.890 46 H 0.274 0.726 47 H 0.116 0.884 48 H 0.152 0.848 49 H 0.059 0.941 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.988 -16.284 1.431 28.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.288 3.712 3 O -0.477 6.477 4 N -0.348 5.348 5 C 0.089 3.911 6 C -0.163 4.163 7 C -0.156 4.156 8 C -0.154 4.154 9 C -0.101 4.101 10 H 0.141 0.859 11 C -0.106 4.106 12 N -0.215 5.215 13 C -0.031 4.031 14 C -0.192 4.192 15 C -0.076 4.076 16 C -0.265 4.265 17 C 0.068 3.932 18 O -0.135 6.135 19 C -0.493 4.493 20 H 0.113 0.887 21 C -0.216 4.216 22 N -0.555 5.555 23 Si 0.833 3.167 24 H -0.182 1.182 25 H -0.190 1.190 26 H -0.185 1.185 27 C -0.221 4.221 28 C -0.069 4.069 29 C -0.100 4.100 30 H 0.125 0.875 31 H 0.105 0.895 32 H 0.129 0.871 33 H 0.256 0.744 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.105 0.895 38 H 0.073 0.927 39 H 0.116 0.884 40 H 0.067 0.933 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.098 0.902 44 H 0.138 0.862 45 H 0.128 0.872 46 H 0.083 0.917 47 H 0.134 0.866 48 H 0.170 0.830 49 H 0.077 0.923 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -22.659 -15.784 1.556 27.658 hybrid contribution 1.231 1.699 -0.557 2.171 sum -21.428 -14.085 0.999 25.662 Atomic orbital electron populations 1.21883 0.88245 1.06073 1.05968 1.21636 0.92253 0.83063 0.74286 1.90749 1.72075 1.33444 1.51449 1.45861 1.05298 1.09238 1.74356 1.21304 0.80611 0.96035 0.93184 1.22623 0.99297 0.98068 0.96346 1.22509 1.01230 0.94731 0.97161 1.22496 0.98289 1.00011 0.94615 1.22711 0.98162 0.94420 0.94772 0.85931 1.23550 0.97308 0.97136 0.92578 1.65870 1.35918 1.07418 1.12298 1.21202 0.88456 0.99226 0.94199 1.20310 0.98729 0.93541 1.06651 1.20843 0.96254 0.94404 0.96103 1.21185 0.96594 1.00339 1.08357 1.19909 0.88541 0.93013 0.91699 1.83931 1.41974 1.20585 1.67046 1.21714 1.05468 0.78645 1.43435 0.88739 1.26526 0.93703 1.05942 0.95456 1.70159 1.07442 1.38492 1.39408 0.84717 0.78704 0.73582 0.79659 1.18200 1.19026 1.18539 1.20470 1.02466 0.90667 1.08502 1.20900 0.91282 0.99783 0.94944 1.23524 0.99304 0.94021 0.93145 0.87545 0.89493 0.87053 0.74359 0.94422 0.92627 0.92288 0.89531 0.92714 0.88420 0.93265 0.87533 0.87938 0.90171 0.86235 0.87222 0.91681 0.86599 0.83014 0.92270 0.93509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 10.30 71.24 0.73 -1.04 16 2 C 0.50 10.71 7.01 87.66 0.61 11.33 16 3 O -0.60 -19.93 14.62 -3.00 -0.04 -19.97 16 4 N -0.69 -11.96 5.27 -416.21 -2.19 -14.15 16 5 C 0.18 4.00 0.91 5.10 0.00 4.01 16 6 C -0.12 -3.49 5.62 31.62 0.18 -3.31 16 7 C -0.12 -2.49 6.90 31.86 0.22 -2.27 16 8 C -0.12 -2.05 6.36 31.62 0.20 -1.85 16 9 C -0.08 -1.35 3.68 -9.30 -0.03 -1.38 16 10 H 0.12 1.24 7.77 -2.39 -0.02 1.22 16 11 C 0.02 0.41 5.86 86.44 0.51 0.92 16 12 N -0.49 -11.31 5.65 -886.43 -5.01 -16.32 16 13 C 0.10 2.33 5.75 85.56 0.49 2.83 16 14 C -0.19 -6.06 3.84 -19.84 -0.08 -6.14 16 15 C -0.06 -2.18 7.49 22.25 0.17 -2.01 16 16 C -0.25 -11.52 9.17 22.39 0.21 -11.32 16 17 C 0.12 6.14 6.65 22.58 0.15 6.29 16 18 O -0.23 -14.21 9.76 -22.72 -0.22 -14.43 16 19 C -0.42 -25.29 9.49 67.92 0.64 -24.65 16 20 H 0.10 5.39 5.20 -2.91 -0.02 5.38 16 21 C -0.02 -1.07 5.49 84.83 0.47 -0.61 16 22 N -0.92 -57.37 13.67 21.61 0.30 -57.08 16 23 Si 1.01 44.62 29.55 68.60 2.03 46.65 16 24 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 26 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 27 C -0.20 -8.64 9.99 22.39 0.22 -8.41 16 28 C -0.05 -1.66 8.03 22.25 0.18 -1.49 16 29 C 0.03 0.83 4.83 86.44 0.42 1.25 16 30 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.11 0.45 8.14 -2.38 -0.02 0.43 16 33 H 0.42 3.81 8.33 -92.71 -0.77 3.04 16 34 H 0.04 1.34 7.18 -2.39 -0.02 1.32 16 35 H 0.05 1.72 6.67 -2.39 -0.02 1.71 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.05 1.21 7.18 -2.38 -0.02 1.19 16 39 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.05 1.11 4.28 -2.38 -0.01 1.09 16 41 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.10 1.99 8.03 -2.39 -0.02 1.97 16 43 H 0.08 1.92 8.08 -2.39 -0.02 1.90 16 44 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 45 H 0.11 5.39 5.64 -2.91 -0.02 5.38 16 46 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 47 H 0.12 4.87 8.06 -2.91 -0.02 4.84 16 48 H 0.15 3.75 7.51 -2.91 -0.02 3.73 16 49 H 0.06 1.94 6.83 -2.39 -0.02 1.92 16 50 H 0.05 1.67 3.81 -2.39 -0.01 1.66 16 Total: -1.00 -80.98 385.16 0.35 -80.63 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.20 Total: 32.53 kcal Atomic # 6 Polarization: -43.15 SS G_CDS: 5.29 Total: -37.86 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -6.90 Total: -87.55 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -0.27 Total: -34.40 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -80.98 0.35 -80.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098665758.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.713 kcal (2) G-P(sol) polarization free energy of solvation -80.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds