Wall clock time and date at job start Wed Apr 1 2020 03:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47256 * 2 1 4 4 C 1.42902 * 113.99882 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46917 * 30.00439 * 4 3 2 6 6 C 1.50692 * 109.47466 * 270.00102 * 4 3 2 7 7 O 1.21286 * 119.99865 * 355.00387 * 6 4 3 8 8 N 1.34780 * 120.00176 * 174.99995 * 6 4 3 9 9 C 1.46496 * 119.99938 * 180.02562 * 8 6 4 10 10 H 1.08997 * 110.55903 * 32.09898 * 9 8 6 11 11 C 1.54853 * 110.76334 * 269.10621 * 9 8 6 12 12 C 1.55848 * 103.44611 * 241.45120 * 11 9 8 13 13 H 1.09005 * 116.13018 * 159.15035 * 12 11 9 14 14 C 1.55847 * 105.06035 * 288.17058 * 12 11 9 15 15 C 1.54853 * 103.44204 * 71.82646 * 14 12 11 16 16 C 1.55840 * 103.45030 * 359.97438 * 15 14 12 17 17 H 1.08994 * 116.13379 * 159.14507 * 16 15 14 18 18 N 1.50239 * 101.05164 * 32.93551 * 12 11 9 19 19 C 1.36934 * 130.83734 * 126.01891 * 18 12 11 20 20 H 1.08004 * 119.99653 * 180.02562 * 19 18 12 21 21 C 1.38810 * 119.99980 * 0.02562 * 19 18 12 22 22 N 1.31622 * 120.00264 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99802 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47228 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46998 * 120.00398 * 23 21 19 26 26 H 1.48501 * 109.47275 * 240.00527 * 23 21 19 27 27 C 1.50701 * 109.46626 * 149.99805 * 4 3 2 28 28 C 1.38233 * 119.99883 * 39.73512 * 27 4 3 29 29 C 1.38240 * 119.99964 * 179.80976 * 28 27 4 30 30 C 1.38240 * 119.99718 * 0.41168 * 29 28 27 31 31 C 1.38230 * 119.99839 * 359.81706 * 30 29 28 32 32 C 1.38233 * 120.00460 * 359.97438 * 31 30 29 33 33 H 1.09004 * 109.47147 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47178 * 299.99855 * 1 2 3 35 35 H 1.08997 * 109.46808 * 60.00007 * 1 2 3 36 36 H 1.08999 * 109.47315 * 239.99651 * 2 1 3 37 37 H 1.09006 * 109.46692 * 120.00023 * 2 1 3 38 38 H 0.96996 * 119.99744 * 0.02562 * 8 6 4 39 39 H 1.08994 * 110.63069 * 122.95862 * 11 9 8 40 40 H 1.09000 * 110.62636 * 359.93355 * 11 9 8 41 41 H 1.08997 * 110.62560 * 190.31487 * 14 12 11 42 42 H 1.08991 * 110.63025 * 313.33912 * 14 12 11 43 43 H 1.09002 * 110.62748 * 118.49166 * 15 14 12 44 44 H 1.09007 * 110.62507 * 241.50562 * 15 14 12 45 45 H 0.96997 * 119.99544 * 179.97438 * 22 21 19 46 46 H 1.07999 * 120.00120 * 359.97438 * 28 27 4 47 47 H 1.08000 * 120.00324 * 180.20846 * 29 28 27 48 48 H 1.08001 * 119.99606 * 179.79654 * 30 29 28 49 49 H 1.08005 * 119.99593 * 179.97438 * 31 30 29 50 50 H 1.07999 * 120.00451 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8635 0.6015 -0.5130 6 6 3.9311 1.4999 1.4215 7 8 3.1416 1.5293 2.3417 8 7 5.2559 1.5027 1.6698 9 6 5.7421 1.5409 3.0512 10 1 5.0519 1.0197 3.7144 11 6 5.9503 3.0021 3.5197 12 6 7.4750 3.0675 3.8358 13 1 7.9211 4.0621 3.8447 14 6 7.6534 2.2388 5.1435 15 6 7.4452 0.7777 4.6750 16 6 7.1687 0.9225 3.1482 17 1 7.3371 0.0316 2.5432 18 7 8.0224 2.1129 2.8129 19 6 8.9982 2.2774 1.8664 20 1 9.2570 1.4597 1.2100 21 6 9.6546 3.4950 1.7506 22 7 9.3395 4.4913 2.5509 23 14 10.9852 3.7196 0.4589 24 1 11.1487 2.4584 -0.3078 25 1 10.5970 4.8141 -0.4664 26 1 12.2674 4.0648 1.1239 27 6 3.8348 2.7262 -0.7099 28 6 3.1033 3.8848 -0.5269 29 6 3.4761 5.0472 -1.1756 30 6 4.5753 5.0489 -2.0139 31 6 5.3039 3.8891 -2.2005 32 6 4.9337 2.7278 -1.5485 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8900 35 1 -0.3633 0.5138 -0.8900 36 1 1.8934 -0.5139 -0.8899 37 1 1.8933 -0.5139 0.8901 38 1 5.8872 1.4795 0.9338 39 1 5.3634 3.2055 4.4153 40 1 5.6929 3.7009 2.7238 41 1 8.6561 2.3728 5.5492 42 1 6.8997 2.5169 5.8802 43 1 8.3447 0.1869 4.8484 44 1 6.5882 0.3311 5.1794 45 1 9.7985 5.3420 2.4701 46 1 2.2422 3.8825 0.1249 47 1 2.9066 5.9533 -1.0300 48 1 4.8645 5.9563 -2.5232 49 1 6.1624 3.8903 -2.8558 50 1 5.5027 1.8215 -1.6946 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111495271.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:24 Heat of formation + Delta-G solvation = -11.679422 kcal Electronic energy + Delta-G solvation = -31638.621920 eV Core-core repulsion = 27632.006072 eV Total energy + Delta-G solvation = -4006.615848 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.28711 -39.19203 -38.30267 -37.19674 -33.80365 -32.73738 -32.39103 -30.86762 -30.53232 -29.12218 -28.91205 -28.02124 -26.26936 -24.19970 -23.12085 -22.36904 -22.02389 -21.15399 -19.85944 -19.74192 -18.69239 -17.35669 -17.08693 -16.92452 -16.72295 -15.62227 -15.51476 -15.16159 -14.82161 -14.51545 -14.34646 -14.06588 -13.79942 -13.69294 -13.39658 -13.26696 -12.92721 -12.63014 -12.48544 -12.26805 -12.04944 -11.89005 -11.83135 -11.34673 -11.26351 -11.11531 -11.01756 -10.94559 -10.93051 -10.85629 -10.53177 -10.38056 -10.32502 -10.09496 -9.90795 -9.49652 -9.22273 -9.13995 -8.97272 -8.78982 -8.55253 -8.42703 -6.95300 -5.75308 -3.14349 1.35384 1.53732 2.88502 3.31056 3.34162 3.38931 3.42271 3.69488 4.06797 4.39146 4.68591 4.82333 4.94802 5.04444 5.08493 5.12298 5.16422 5.21529 5.25306 5.30363 5.35599 5.52932 5.59315 5.64636 5.70623 5.72538 5.83444 5.87330 5.99203 6.01364 6.05902 6.11162 6.14655 6.14748 6.31613 6.42716 6.49618 6.53296 6.58074 6.60991 6.62416 6.74748 6.83687 6.94621 7.02313 7.08354 7.14700 7.34456 7.46092 7.78750 8.00016 8.16632 8.61264 9.06051 9.69648 10.50868 11.33712 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009797 B = 0.004455 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.393688 B = 6284.076399 C = 8144.872114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 O -0.352 6.352 4 C 0.119 3.881 5 H 0.089 0.911 6 C 0.492 3.508 7 O -0.536 6.536 8 N -0.699 5.699 9 C 0.129 3.871 10 H 0.078 0.922 11 C -0.141 4.141 12 C 0.154 3.846 13 H 0.153 0.847 14 C -0.139 4.139 15 C -0.127 4.127 16 C 0.125 3.875 17 H 0.087 0.913 18 N -0.590 5.590 19 C -0.214 4.214 20 H 0.078 0.922 21 C -0.008 4.008 22 N -0.918 5.918 23 Si 0.912 3.088 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.088 4.088 28 C -0.084 4.084 29 C -0.123 4.123 30 C -0.112 4.112 31 C -0.115 4.115 32 C -0.102 4.102 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.047 0.953 37 H 0.052 0.948 38 H 0.402 0.598 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.253 0.747 46 H 0.126 0.874 47 H 0.122 0.878 48 H 0.121 0.879 49 H 0.125 0.875 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.934 -5.763 -6.880 14.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.269 6.269 4 C 0.057 3.943 5 H 0.106 0.894 6 C 0.277 3.723 7 O -0.413 6.413 8 N -0.350 5.350 9 C 0.022 3.978 10 H 0.096 0.904 11 C -0.182 4.182 12 C 0.048 3.952 13 H 0.170 0.830 14 C -0.179 4.179 15 C -0.167 4.167 16 C 0.017 3.983 17 H 0.105 0.895 18 N -0.311 5.311 19 C -0.342 4.342 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.565 5.565 23 Si 0.743 3.257 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.089 4.089 28 C -0.102 4.102 29 C -0.141 4.141 30 C -0.130 4.130 31 C -0.133 4.133 32 C -0.120 4.120 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.236 0.764 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.144 0.856 47 H 0.140 0.860 48 H 0.139 0.861 49 H 0.143 0.857 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.392 -5.423 -6.389 14.960 hybrid contribution 1.233 -0.092 -0.902 1.530 sum -11.160 -5.516 -7.291 14.426 Atomic orbital electron populations 1.21697 0.93506 1.02087 1.03185 1.22568 0.95886 0.83616 1.00043 1.87983 1.17827 1.26608 1.94522 1.20687 0.83563 0.97094 0.92911 0.89373 1.20972 0.83151 0.77076 0.91146 1.90667 1.55281 1.49703 1.45643 1.45993 1.06044 1.73010 1.09968 1.22623 0.95945 0.97963 0.81219 0.90355 1.23427 0.99983 0.95102 0.99656 1.23752 0.88787 0.97597 0.85085 0.83032 1.23069 0.99933 0.95638 0.99212 1.22869 0.99699 0.97555 0.96585 1.23158 0.89136 0.91702 0.94353 0.89549 1.46541 1.39825 1.07363 1.37373 1.19014 1.09735 0.97084 1.08317 0.90449 1.24675 1.00136 0.95963 0.99616 1.69472 1.44073 1.03171 1.39806 0.86036 0.81420 0.77516 0.80715 1.20625 1.21808 1.21850 1.19309 0.97089 0.93789 0.98694 1.20969 0.99080 0.91813 0.98335 1.21136 0.97545 0.97944 0.97466 1.21192 0.95374 0.98114 0.98316 1.21069 0.99535 0.92705 0.99985 1.20928 0.95984 0.98947 0.96143 0.91193 0.91568 0.91984 0.93458 0.92958 0.76388 0.92943 0.92207 0.92634 0.93353 0.92454 0.93050 0.93616 0.85596 0.86046 0.86110 0.85743 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.28 37.16 0.38 -1.04 16 2 C 0.06 0.64 6.46 37.16 0.24 0.88 16 3 O -0.35 -5.14 8.84 -55.09 -0.49 -5.63 16 4 C 0.12 1.71 2.72 -29.04 -0.08 1.63 16 5 H 0.09 1.04 7.65 -51.93 -0.40 0.64 16 6 C 0.49 8.58 7.11 -10.99 -0.08 8.51 16 7 O -0.54 -11.04 16.15 -14.31 -0.23 -11.27 16 8 N -0.70 -12.26 5.04 -51.43 -0.26 -12.52 16 9 C 0.13 2.44 2.80 -65.47 -0.18 2.25 16 10 H 0.08 1.50 7.22 -51.93 -0.38 1.12 16 11 C -0.14 -2.96 6.23 -24.23 -0.15 -3.11 16 12 C 0.15 3.52 4.72 -62.80 -0.30 3.23 16 13 H 0.15 3.98 5.52 -51.93 -0.29 3.69 16 14 C -0.14 -2.76 6.44 -24.23 -0.16 -2.92 16 15 C -0.13 -2.31 6.44 -24.24 -0.16 -2.46 16 16 C 0.13 2.42 5.06 -62.81 -0.32 2.10 16 17 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 18 N -0.59 -13.82 2.99 -145.82 -0.44 -14.25 16 19 C -0.21 -5.49 10.59 -15.06 -0.16 -5.65 16 20 H 0.08 1.92 7.83 -52.48 -0.41 1.51 16 21 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 22 N -0.92 -25.51 10.47 55.49 0.58 -24.93 16 23 Si 0.91 21.12 29.55 -169.99 -5.02 16.09 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 C -0.09 -1.29 4.92 -104.62 -0.52 -1.80 16 28 C -0.08 -1.25 9.35 -39.58 -0.37 -1.62 16 29 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 30 C -0.11 -1.46 10.05 -39.58 -0.40 -1.85 16 31 C -0.11 -1.53 10.05 -39.59 -0.40 -1.92 16 32 C -0.10 -1.38 9.67 -39.58 -0.38 -1.76 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.45 8.09 -51.93 -0.42 0.03 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.40 6.84 8.66 -40.82 -0.35 6.49 16 39 H 0.05 1.04 7.81 -51.93 -0.41 0.63 16 40 H 0.06 1.38 7.98 -51.93 -0.41 0.96 16 41 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.05 0.86 7.81 -51.93 -0.41 0.46 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.05 0.83 7.82 -51.93 -0.41 0.42 16 45 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 46 H 0.13 1.92 7.77 -52.49 -0.41 1.51 16 47 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 48 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 49 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 50 H 0.12 1.41 8.04 -52.49 -0.42 0.99 16 LS Contribution 404.47 15.07 6.10 6.10 Total: -1.00 -30.71 404.47 -11.34 -42.05 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -8.07 Total: 12.25 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -3.51 Total: -7.89 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.11 Total: -51.71 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.72 Total: -16.90 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.71 -11.34 -42.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111495271.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.371 kcal (2) G-P(sol) polarization free energy of solvation -30.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds