Wall clock time and date at job start Wed Apr 1 2020 03:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47256 * 2 1 4 4 C 1.42902 * 113.99882 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46917 * 30.00439 * 4 3 2 6 6 C 1.50692 * 109.47466 * 270.00102 * 4 3 2 7 7 O 1.21286 * 119.99865 * 355.00387 * 6 4 3 8 8 N 1.34780 * 120.00176 * 174.99995 * 6 4 3 9 9 C 1.46496 * 119.99938 * 180.02562 * 8 6 4 10 10 H 1.08997 * 110.55903 * 32.09898 * 9 8 6 11 11 C 1.54853 * 110.76334 * 269.10621 * 9 8 6 12 12 C 1.55848 * 103.44611 * 241.45120 * 11 9 8 13 13 H 1.09005 * 116.13018 * 159.15035 * 12 11 9 14 14 C 1.55847 * 105.06035 * 288.17058 * 12 11 9 15 15 C 1.54853 * 103.44204 * 71.82646 * 14 12 11 16 16 C 1.55840 * 103.45030 * 359.97438 * 15 14 12 17 17 H 1.08994 * 116.13379 * 159.14507 * 16 15 14 18 18 N 1.50239 * 101.05164 * 32.93551 * 12 11 9 19 19 C 1.36934 * 130.83734 * 126.01891 * 18 12 11 20 20 H 1.08004 * 119.99653 * 180.02562 * 19 18 12 21 21 C 1.38810 * 119.99980 * 0.02562 * 19 18 12 22 22 N 1.31622 * 120.00264 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99802 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47228 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46998 * 120.00398 * 23 21 19 26 26 H 1.48501 * 109.47275 * 240.00527 * 23 21 19 27 27 C 1.50701 * 109.46626 * 149.99805 * 4 3 2 28 28 C 1.38233 * 119.99883 * 39.73512 * 27 4 3 29 29 C 1.38240 * 119.99964 * 179.80976 * 28 27 4 30 30 C 1.38240 * 119.99718 * 0.41168 * 29 28 27 31 31 C 1.38230 * 119.99839 * 359.81706 * 30 29 28 32 32 C 1.38233 * 120.00460 * 359.97438 * 31 30 29 33 33 H 1.09004 * 109.47147 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47178 * 299.99855 * 1 2 3 35 35 H 1.08997 * 109.46808 * 60.00007 * 1 2 3 36 36 H 1.08999 * 109.47315 * 239.99651 * 2 1 3 37 37 H 1.09006 * 109.46692 * 120.00023 * 2 1 3 38 38 H 0.96996 * 119.99744 * 0.02562 * 8 6 4 39 39 H 1.08994 * 110.63069 * 122.95862 * 11 9 8 40 40 H 1.09000 * 110.62636 * 359.93355 * 11 9 8 41 41 H 1.08997 * 110.62560 * 190.31487 * 14 12 11 42 42 H 1.08991 * 110.63025 * 313.33912 * 14 12 11 43 43 H 1.09002 * 110.62748 * 118.49166 * 15 14 12 44 44 H 1.09007 * 110.62507 * 241.50562 * 15 14 12 45 45 H 0.96997 * 119.99544 * 179.97438 * 22 21 19 46 46 H 1.07999 * 120.00120 * 359.97438 * 28 27 4 47 47 H 1.08000 * 120.00324 * 180.20846 * 29 28 27 48 48 H 1.08001 * 119.99606 * 179.79654 * 30 29 28 49 49 H 1.08005 * 119.99593 * 179.97438 * 31 30 29 50 50 H 1.07999 * 120.00451 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8635 0.6015 -0.5130 6 6 3.9311 1.4999 1.4215 7 8 3.1416 1.5293 2.3417 8 7 5.2559 1.5027 1.6698 9 6 5.7421 1.5409 3.0512 10 1 5.0519 1.0197 3.7144 11 6 5.9503 3.0021 3.5197 12 6 7.4750 3.0675 3.8358 13 1 7.9211 4.0621 3.8447 14 6 7.6534 2.2388 5.1435 15 6 7.4452 0.7777 4.6750 16 6 7.1687 0.9225 3.1482 17 1 7.3371 0.0316 2.5432 18 7 8.0224 2.1129 2.8129 19 6 8.9982 2.2774 1.8664 20 1 9.2570 1.4597 1.2100 21 6 9.6546 3.4950 1.7506 22 7 9.3395 4.4913 2.5509 23 14 10.9852 3.7196 0.4589 24 1 11.1487 2.4584 -0.3078 25 1 10.5970 4.8141 -0.4664 26 1 12.2674 4.0648 1.1239 27 6 3.8348 2.7262 -0.7099 28 6 3.1033 3.8848 -0.5269 29 6 3.4761 5.0472 -1.1756 30 6 4.5753 5.0489 -2.0139 31 6 5.3039 3.8891 -2.2005 32 6 4.9337 2.7278 -1.5485 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8900 35 1 -0.3633 0.5138 -0.8900 36 1 1.8934 -0.5139 -0.8899 37 1 1.8933 -0.5139 0.8901 38 1 5.8872 1.4795 0.9338 39 1 5.3634 3.2055 4.4153 40 1 5.6929 3.7009 2.7238 41 1 8.6561 2.3728 5.5492 42 1 6.8997 2.5169 5.8802 43 1 8.3447 0.1869 4.8484 44 1 6.5882 0.3311 5.1794 45 1 9.7985 5.3420 2.4701 46 1 2.2422 3.8825 0.1249 47 1 2.9066 5.9533 -1.0300 48 1 4.8645 5.9563 -2.5232 49 1 6.1624 3.8903 -2.8558 50 1 5.5027 1.8215 -1.6946 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111495271.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:23 Heat of formation + Delta-G solvation = -27.423062 kcal Electronic energy + Delta-G solvation = -31639.304616 eV Core-core repulsion = 27632.006072 eV Total energy + Delta-G solvation = -4007.298544 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.61663 -40.61565 -39.53120 -38.37984 -35.32570 -34.44387 -33.58592 -31.88504 -31.47752 -30.95786 -30.48348 -29.55870 -27.51553 -26.06710 -24.05177 -23.51494 -23.15888 -22.47322 -21.52646 -21.18790 -20.31804 -18.84063 -18.60221 -18.13082 -17.82385 -16.99999 -16.71182 -16.65381 -16.24810 -15.79945 -15.66878 -15.49579 -15.19209 -15.00294 -14.74343 -14.45320 -14.27511 -13.72772 -13.68364 -13.62746 -13.36298 -13.17644 -12.90120 -12.88275 -12.87522 -12.76472 -12.69878 -12.25402 -12.10566 -12.06309 -11.93257 -11.88403 -11.86394 -11.70167 -11.51857 -11.08792 -10.93968 -10.85502 -10.41250 -9.96169 -9.84390 -9.68102 -8.84773 -7.72585 -5.12501 0.29481 0.47892 1.50345 1.51548 1.54313 1.60330 2.08714 2.52500 2.60362 2.96670 3.40867 3.45884 3.61751 3.75872 3.81857 4.02551 4.07720 4.09625 4.13297 4.17409 4.25892 4.27632 4.34970 4.45720 4.46286 4.47997 4.58003 4.61894 4.65230 4.68906 4.81600 4.83393 4.89610 4.98433 5.02644 5.09412 5.11251 5.16401 5.18386 5.24348 5.38440 5.50314 5.52715 5.53350 5.58690 5.60141 5.69950 5.91127 6.02476 6.07245 6.28534 6.61136 7.08150 7.22831 7.75720 8.61221 9.35076 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009797 B = 0.004455 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.393688 B = 6284.076399 C = 8144.872114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 O -0.370 6.370 4 C 0.126 3.874 5 H 0.119 0.881 6 C 0.493 3.507 7 O -0.571 6.571 8 N -0.696 5.696 9 C 0.139 3.861 10 H 0.084 0.916 11 C -0.131 4.131 12 C 0.141 3.859 13 H 0.115 0.885 14 C -0.133 4.133 15 C -0.119 4.119 16 C 0.129 3.871 17 H 0.106 0.894 18 N -0.608 5.608 19 C -0.210 4.210 20 H 0.088 0.912 21 C -0.065 4.065 22 N -0.948 5.948 23 Si 0.970 3.030 24 H -0.263 1.263 25 H -0.298 1.298 26 H -0.302 1.302 27 C -0.101 4.101 28 C -0.105 4.105 29 C -0.131 4.131 30 C -0.119 4.119 31 C -0.126 4.126 32 C -0.108 4.108 33 H 0.095 0.905 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.041 0.959 38 H 0.405 0.595 39 H 0.061 0.939 40 H 0.029 0.971 41 H 0.039 0.961 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.080 0.920 45 H 0.243 0.757 46 H 0.113 0.887 47 H 0.138 0.862 48 H 0.143 0.857 49 H 0.143 0.857 50 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.126 -7.857 -8.161 16.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.029 4.029 3 O -0.288 6.288 4 C 0.065 3.935 5 H 0.137 0.863 6 C 0.279 3.721 7 O -0.451 6.451 8 N -0.347 5.347 9 C 0.032 3.968 10 H 0.102 0.898 11 C -0.172 4.172 12 C 0.035 3.965 13 H 0.132 0.868 14 C -0.172 4.172 15 C -0.158 4.158 16 C 0.022 3.978 17 H 0.123 0.877 18 N -0.329 5.329 19 C -0.339 4.339 20 H 0.105 0.895 21 C -0.257 4.257 22 N -0.598 5.598 23 Si 0.800 3.200 24 H -0.187 1.187 25 H -0.225 1.225 26 H -0.230 1.230 27 C -0.101 4.101 28 C -0.123 4.123 29 C -0.149 4.149 30 C -0.137 4.137 31 C -0.143 4.143 32 C -0.126 4.126 33 H 0.113 0.887 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.241 0.759 39 H 0.079 0.921 40 H 0.048 0.952 41 H 0.058 0.942 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.053 0.947 46 H 0.131 0.869 47 H 0.156 0.844 48 H 0.161 0.839 49 H 0.161 0.839 50 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.600 -7.561 -7.683 16.582 hybrid contribution 1.233 0.571 -0.481 1.441 sum -11.368 -6.989 -8.164 15.644 Atomic orbital electron populations 1.21717 0.92272 1.03562 1.02586 1.22822 0.97003 0.82434 1.00689 1.87985 1.17877 1.28571 1.94396 1.20664 0.83794 0.98244 0.90803 0.86321 1.21574 0.82580 0.75702 0.92274 1.90643 1.56019 1.51256 1.47133 1.45941 1.06367 1.72856 1.09489 1.22438 0.95933 0.96191 0.82202 0.89777 1.23279 0.98819 0.96029 0.99049 1.23562 0.89513 0.96583 0.86888 0.86784 1.22963 0.99685 0.96509 0.98033 1.22828 1.01162 0.96254 0.95585 1.23360 0.88093 0.90963 0.95417 0.87657 1.46716 1.39973 1.09043 1.37203 1.19377 1.09338 0.96990 1.08198 0.89475 1.25385 1.02496 0.96140 1.01695 1.69731 1.45246 1.03250 1.41566 0.85113 0.78570 0.77684 0.78616 1.18730 1.22515 1.23021 1.19425 0.97662 0.93708 0.99321 1.21044 0.99332 0.92906 0.99052 1.21394 0.98014 0.98181 0.97301 1.21533 0.94967 0.99112 0.98043 1.21432 1.00080 0.92717 1.00116 1.21218 0.95647 1.00043 0.95683 0.88676 0.93168 0.91552 0.90942 0.94023 0.75942 0.92087 0.95220 0.94220 0.91393 0.91961 0.90177 0.94677 0.86935 0.84380 0.83929 0.83901 0.83692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 10.28 71.98 0.74 -1.84 16 2 C 0.05 1.00 6.46 71.98 0.46 1.47 16 3 O -0.37 -10.54 8.84 -129.99 -1.15 -11.69 16 4 C 0.13 3.48 2.72 29.10 0.08 3.56 16 5 H 0.12 2.48 7.65 -2.39 -0.02 2.46 16 6 C 0.49 16.78 7.11 87.65 0.62 17.41 16 7 O -0.57 -23.41 16.15 15.94 0.26 -23.15 16 8 N -0.70 -23.55 5.04 -435.02 -2.19 -25.74 16 9 C 0.14 5.06 2.80 46.59 0.13 5.19 16 10 H 0.08 3.03 7.22 -2.39 -0.02 3.01 16 11 C -0.13 -5.51 6.23 32.21 0.20 -5.31 16 12 C 0.14 6.51 4.72 46.23 0.22 6.73 16 13 H 0.11 6.25 5.52 -2.38 -0.01 6.23 16 14 C -0.13 -5.13 6.44 32.21 0.21 -4.93 16 15 C -0.12 -3.98 6.44 32.21 0.21 -3.78 16 16 C 0.13 4.70 5.06 46.20 0.23 4.93 16 17 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 18 N -0.61 -28.05 2.99 -615.25 -1.84 -29.88 16 19 C -0.21 -10.64 10.59 84.03 0.89 -9.75 16 20 H 0.09 4.15 7.83 -2.91 -0.02 4.12 16 21 C -0.06 -3.44 5.50 84.86 0.47 -2.98 16 22 N -0.95 -54.25 10.47 21.65 0.23 -54.02 16 23 Si 0.97 43.46 29.55 68.60 2.03 45.48 16 24 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 25 H -0.30 -13.51 7.11 99.48 0.71 -12.81 16 26 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 27 C -0.10 -2.86 4.92 -19.87 -0.10 -2.96 16 28 C -0.11 -3.16 9.35 22.27 0.21 -2.95 16 29 C -0.13 -3.47 10.05 22.27 0.22 -3.25 16 30 C -0.12 -2.94 10.05 22.27 0.22 -2.72 16 31 C -0.13 -3.12 10.05 22.27 0.22 -2.90 16 32 C -0.11 -2.74 9.67 22.27 0.22 -2.53 16 33 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.19 8.09 -2.39 -0.02 1.17 16 37 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.41 13.16 8.66 -92.71 -0.80 12.36 16 39 H 0.06 2.40 7.81 -2.39 -0.02 2.38 16 40 H 0.03 1.39 7.98 -2.39 -0.02 1.37 16 41 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.07 2.33 7.81 -2.39 -0.02 2.31 16 43 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.08 2.27 7.82 -2.38 -0.02 2.25 16 45 H 0.24 13.78 8.31 -92.71 -0.77 13.01 16 46 H 0.11 3.58 7.77 -2.91 -0.02 3.56 16 47 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 48 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 49 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 50 H 0.15 2.92 8.04 -2.91 -0.02 2.90 16 Total: -1.00 -67.53 404.47 2.92 -64.61 By element: Atomic # 1 Polarization: 40.85 SS G_CDS: 0.13 Total: 40.98 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 5.46 Total: -6.59 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -3.80 Total: -109.65 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -0.89 Total: -34.84 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -67.53 2.92 -64.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111495271.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.186 kcal (2) G-P(sol) polarization free energy of solvation -67.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds