Wall clock time and date at job start Wed Apr 1 2020 03:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42903 * 109.46830 * 2 1 4 4 C 1.42900 * 114.00000 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.46990 * 30.00069 * 4 3 2 6 6 C 1.50698 * 109.47028 * 149.99959 * 4 3 2 7 7 O 1.21284 * 120.00164 * 5.00196 * 6 4 3 8 8 N 1.34775 * 120.00009 * 185.00002 * 6 4 3 9 9 C 1.46497 * 120.00034 * 180.02562 * 8 6 4 10 10 H 1.08996 * 110.55878 * 32.10303 * 9 8 6 11 11 C 1.54855 * 110.62558 * 269.02445 * 9 8 6 12 12 C 1.55843 * 103.44646 * 241.50857 * 11 9 8 13 13 H 1.09004 * 116.12738 * 159.14640 * 12 11 9 14 14 C 1.55841 * 105.06870 * 288.17954 * 12 11 9 15 15 C 1.54847 * 103.44648 * 71.82317 * 14 12 11 16 16 C 1.55845 * 103.44622 * 0.02562 * 15 14 12 17 17 H 1.09001 * 116.12913 * 159.15189 * 16 15 14 18 18 N 1.50234 * 101.05137 * 32.93650 * 16 15 14 19 19 C 1.36931 * 130.83802 * 126.01207 * 18 16 15 20 20 H 1.07996 * 120.00085 * 0.02562 * 19 18 16 21 21 C 1.38816 * 120.00242 * 179.97438 * 19 18 16 22 22 N 1.31620 * 119.99708 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00394 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47059 * 90.00140 * 23 21 19 25 25 H 1.48499 * 109.47650 * 210.00170 * 23 21 19 26 26 H 1.48496 * 109.47300 * 330.00428 * 23 21 19 27 27 C 1.50693 * 109.47359 * 270.00110 * 4 3 2 28 28 C 1.38233 * 120.00207 * 144.99441 * 27 4 3 29 29 C 1.38234 * 120.00037 * 179.72405 * 28 27 4 30 30 C 1.38234 * 120.00240 * 0.26327 * 29 28 27 31 31 C 1.38238 * 119.99693 * 359.97438 * 30 29 28 32 32 C 1.38234 * 120.00082 * 0.02562 * 31 30 29 33 33 H 1.09001 * 109.47264 * 300.00009 * 1 2 3 34 34 H 1.08998 * 109.47236 * 60.00233 * 1 2 3 35 35 H 1.09003 * 109.46827 * 179.97438 * 1 2 3 36 36 H 1.09003 * 109.46836 * 240.00296 * 2 1 3 37 37 H 1.08998 * 109.47236 * 119.99767 * 2 1 3 38 38 H 0.97004 * 120.00225 * 0.02562 * 8 6 4 39 39 H 1.08993 * 110.62746 * 0.02562 * 11 9 8 40 40 H 1.08997 * 110.62201 * 123.02461 * 11 9 8 41 41 H 1.09001 * 110.63212 * 190.31300 * 14 12 11 42 42 H 1.08999 * 110.62610 * 313.17760 * 14 12 11 43 43 H 1.08999 * 110.62873 * 241.51135 * 15 14 12 44 44 H 1.09001 * 110.62728 * 118.49148 * 15 14 12 45 45 H 0.97002 * 120.00070 * 179.97438 * 22 21 19 46 46 H 1.08002 * 120.00157 * 0.02562 * 28 27 4 47 47 H 1.07999 * 120.00009 * 180.28389 * 29 28 27 48 48 H 1.07997 * 120.00460 * 180.02562 * 30 29 28 49 49 H 1.08001 * 119.99643 * 179.97438 * 31 30 29 50 50 H 1.07999 * 120.00025 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.8636 0.6016 -0.5130 6 6 3.8347 2.7264 -0.7098 7 8 2.9863 3.5047 -1.0913 8 7 5.1386 2.9939 -0.9213 9 6 5.5311 4.2251 -1.6114 10 1 4.8257 5.0272 -1.3944 11 6 5.6369 3.9850 -3.1376 12 6 7.1330 4.2901 -3.4497 13 1 7.5283 3.8615 -4.3706 14 6 7.2674 5.8369 -3.3160 15 6 7.1617 6.0770 -1.7899 16 6 6.9785 4.6424 -1.2092 17 1 7.2291 4.5152 -0.1561 18 7 7.7921 3.8332 -2.1788 19 6 8.8182 2.9511 -1.9690 20 1 9.1589 2.7482 -0.9645 21 6 9.4199 2.3170 -3.0473 22 7 9.0043 2.5640 -4.2715 23 14 10.8202 1.1143 -2.7612 24 1 10.2695 -0.2533 -2.5829 25 1 11.7342 1.1311 -3.9314 26 1 11.5701 1.5087 -1.5417 27 6 3.9311 1.5001 1.4215 28 6 5.1365 0.9068 1.7469 29 6 5.5980 0.9484 3.0492 30 6 4.8516 1.5785 4.0273 31 6 3.6438 2.1675 3.7029 32 6 3.1822 2.1260 2.4006 33 1 -0.3634 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 -0.3633 -1.0277 -0.0005 36 1 1.8933 -0.5138 -0.8901 37 1 1.8934 -0.5138 0.8900 38 1 5.8171 2.3713 -0.6166 39 1 5.3968 2.9501 -3.3810 40 1 4.9843 4.6691 -3.6800 41 1 8.2342 6.1723 -3.6914 42 1 6.4567 6.3398 -3.8433 43 1 6.2971 6.6989 -1.5580 44 1 8.0761 6.5314 -1.4084 45 1 9.4250 2.1211 -5.0251 46 1 5.7200 0.4150 0.9826 47 1 6.5420 0.4888 3.3025 48 1 5.2123 1.6113 5.0447 49 1 3.0604 2.6595 4.4672 50 1 2.2384 2.5858 2.1472 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111495272.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:28 Heat of formation + Delta-G solvation = -11.251663 kcal Electronic energy + Delta-G solvation = -31341.547942 eV Core-core repulsion = 27334.950643 eV Total energy + Delta-G solvation = -4006.597299 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.32379 -39.28119 -38.26872 -37.35304 -33.80547 -32.72321 -32.38118 -31.00846 -30.68098 -29.13003 -28.91735 -28.04884 -26.34987 -24.20658 -23.11978 -22.50405 -22.16771 -21.15115 -19.86441 -19.75848 -18.67998 -17.45616 -17.05098 -16.85586 -16.76291 -15.92539 -15.52777 -15.08999 -14.84390 -14.68216 -14.39674 -14.23439 -13.91144 -13.60486 -13.43722 -13.25185 -12.98391 -12.76464 -12.57452 -12.35556 -12.05019 -11.98199 -11.83068 -11.41478 -11.27967 -11.14127 -11.12703 -11.01546 -10.95663 -10.92809 -10.51077 -10.35760 -10.12584 -10.02215 -9.90882 -9.60507 -9.26786 -9.18385 -8.99515 -8.97747 -8.72067 -8.42754 -6.96783 -5.76792 -3.15817 1.18920 1.34823 2.93043 3.05582 3.32935 3.38678 3.40922 3.65412 4.14893 4.38258 4.54597 4.78453 4.92747 4.93970 4.97012 5.06036 5.10804 5.13392 5.20347 5.25811 5.34235 5.41408 5.48696 5.58018 5.65070 5.70629 5.77402 5.84770 5.88017 5.96316 5.99479 6.05811 6.11738 6.15215 6.30968 6.37262 6.42644 6.43941 6.44619 6.49704 6.61908 6.74847 6.83029 6.90287 6.94055 7.01714 7.14610 7.32905 7.45350 7.77566 7.99662 8.15315 8.62038 9.04950 9.68154 10.49858 11.32186 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010124 B = 0.003692 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.157497 B = 7581.495029 C = 8273.884427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.350 6.350 4 C 0.115 3.885 5 H 0.092 0.908 6 C 0.518 3.482 7 O -0.529 6.529 8 N -0.700 5.700 9 C 0.130 3.870 10 H 0.080 0.920 11 C -0.143 4.143 12 C 0.154 3.846 13 H 0.153 0.847 14 C -0.139 4.139 15 C -0.127 4.127 16 C 0.126 3.874 17 H 0.087 0.913 18 N -0.591 5.591 19 C -0.214 4.214 20 H 0.078 0.922 21 C -0.010 4.010 22 N -0.919 5.919 23 Si 0.914 3.086 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.112 4.112 28 C -0.106 4.106 29 C -0.118 4.118 30 C -0.116 4.116 31 C -0.124 4.124 32 C -0.087 4.087 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.402 0.598 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.254 0.746 46 H 0.126 0.874 47 H 0.125 0.875 48 H 0.120 0.880 49 H 0.121 0.879 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.023 -3.678 12.091 16.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 O -0.268 6.268 4 C 0.053 3.947 5 H 0.110 0.890 6 C 0.302 3.698 7 O -0.406 6.406 8 N -0.350 5.350 9 C 0.024 3.976 10 H 0.098 0.902 11 C -0.183 4.183 12 C 0.047 3.953 13 H 0.170 0.830 14 C -0.178 4.178 15 C -0.167 4.167 16 C 0.018 3.982 17 H 0.105 0.895 18 N -0.312 5.312 19 C -0.342 4.342 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.567 5.567 23 Si 0.744 3.256 24 H -0.218 1.218 25 H -0.217 1.217 26 H -0.208 1.208 27 C -0.113 4.113 28 C -0.125 4.125 29 C -0.136 4.136 30 C -0.134 4.134 31 C -0.142 4.142 32 C -0.105 4.105 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.236 0.764 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.144 0.856 47 H 0.142 0.858 48 H 0.139 0.861 49 H 0.139 0.861 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.511 -3.170 11.703 16.719 hybrid contribution 1.269 -1.172 0.331 1.758 sum -10.243 -4.341 12.034 16.388 Atomic orbital electron populations 1.21711 0.93455 1.02080 1.03322 1.22600 0.95833 0.83696 1.00213 1.88032 1.17830 1.26216 1.94684 1.20717 0.83576 0.97906 0.92474 0.89025 1.19969 0.83297 0.86960 0.79605 1.90679 1.50272 1.48481 1.51139 1.45885 1.06147 1.24440 1.58547 1.22664 0.97003 0.85034 0.92870 0.90205 1.23446 1.00004 1.00719 0.94124 1.23767 0.87826 0.89629 0.94070 0.82994 1.23062 0.99888 1.00198 0.94682 1.22867 0.99836 0.96756 0.97266 1.23173 0.89228 0.91522 0.94322 0.89481 1.46545 1.36653 1.47088 1.00886 1.18993 1.07132 1.15039 0.92998 0.90442 1.24690 0.99996 1.00716 0.95137 1.69462 1.43667 1.45992 0.97549 0.86088 0.81670 0.80804 0.76991 1.21755 1.21700 1.20807 1.20072 0.96049 1.00348 0.94802 1.21082 0.95261 0.99061 0.97053 1.21114 0.99847 0.99748 0.92922 1.21196 0.94984 0.97867 0.99366 1.21153 0.96595 1.00100 0.96385 1.21012 0.99802 0.97360 0.92366 0.91855 0.91625 0.91145 0.93136 0.93234 0.76362 0.92243 0.92758 0.92645 0.93306 0.92980 0.92443 0.93547 0.85577 0.85751 0.86148 0.86065 0.85406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.28 37.16 0.38 -0.99 16 2 C 0.05 0.58 6.46 37.16 0.24 0.82 16 3 O -0.35 -5.11 8.67 -55.09 -0.48 -5.59 16 4 C 0.12 1.65 2.73 -29.04 -0.08 1.57 16 5 H 0.09 1.17 7.70 -51.93 -0.40 0.77 16 6 C 0.52 9.19 7.17 -10.99 -0.08 9.11 16 7 O -0.53 -11.24 16.15 -14.31 -0.23 -11.47 16 8 N -0.70 -12.32 5.03 -51.37 -0.26 -12.58 16 9 C 0.13 2.47 2.81 -65.40 -0.18 2.29 16 10 H 0.08 1.55 7.23 -51.93 -0.38 1.17 16 11 C -0.14 -2.93 6.23 -24.24 -0.15 -3.08 16 12 C 0.15 3.47 4.72 -62.78 -0.30 3.17 16 13 H 0.15 3.94 5.52 -51.93 -0.29 3.65 16 14 C -0.14 -2.75 6.44 -24.24 -0.16 -2.90 16 15 C -0.13 -2.33 6.44 -24.24 -0.16 -2.48 16 16 C 0.13 2.46 5.06 -62.77 -0.32 2.15 16 17 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 18 N -0.59 -13.78 2.99 -145.76 -0.44 -14.22 16 19 C -0.21 -5.47 10.59 -15.06 -0.16 -5.62 16 20 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 22 N -0.92 -25.33 10.47 55.49 0.58 -24.75 16 23 Si 0.91 20.98 29.55 -169.99 -5.02 15.96 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 C -0.11 -1.46 4.91 -104.63 -0.51 -1.97 16 28 C -0.11 -1.27 9.52 -39.58 -0.38 -1.64 16 29 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 30 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 31 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 32 C -0.09 -1.11 9.35 -39.58 -0.37 -1.48 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.52 8.09 -51.93 -0.42 0.10 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.40 6.83 8.49 -40.82 -0.35 6.48 16 39 H 0.06 1.31 7.98 -51.93 -0.41 0.89 16 40 H 0.05 1.05 7.82 -51.93 -0.41 0.64 16 41 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.05 0.87 7.82 -51.93 -0.41 0.46 16 43 H 0.05 0.85 7.82 -51.93 -0.41 0.44 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 46 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 47 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 48 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 49 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 50 H 0.13 1.69 7.62 -52.49 -0.40 1.29 16 LS Contribution 403.94 15.07 6.09 6.09 Total: -1.00 -30.48 403.94 -11.32 -41.80 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -8.06 Total: 11.17 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -3.51 Total: -6.42 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -0.11 Total: -51.55 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.71 Total: -17.05 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.48 -11.32 -41.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111495272.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.551 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds