Wall clock time and date at job start Wed Apr 1 2020 03:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42903 * 109.46830 * 2 1 4 4 C 1.42900 * 114.00000 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.46990 * 30.00069 * 4 3 2 6 6 C 1.50698 * 109.47028 * 149.99959 * 4 3 2 7 7 O 1.21284 * 120.00164 * 5.00196 * 6 4 3 8 8 N 1.34775 * 120.00009 * 185.00002 * 6 4 3 9 9 C 1.46497 * 120.00034 * 180.02562 * 8 6 4 10 10 H 1.08996 * 110.55878 * 32.10303 * 9 8 6 11 11 C 1.54855 * 110.62558 * 269.02445 * 9 8 6 12 12 C 1.55843 * 103.44646 * 241.50857 * 11 9 8 13 13 H 1.09004 * 116.12738 * 159.14640 * 12 11 9 14 14 C 1.55841 * 105.06870 * 288.17954 * 12 11 9 15 15 C 1.54847 * 103.44648 * 71.82317 * 14 12 11 16 16 C 1.55845 * 103.44622 * 0.02562 * 15 14 12 17 17 H 1.09001 * 116.12913 * 159.15189 * 16 15 14 18 18 N 1.50234 * 101.05137 * 32.93650 * 16 15 14 19 19 C 1.36931 * 130.83802 * 126.01207 * 18 16 15 20 20 H 1.07996 * 120.00085 * 0.02562 * 19 18 16 21 21 C 1.38816 * 120.00242 * 179.97438 * 19 18 16 22 22 N 1.31620 * 119.99708 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00394 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47059 * 90.00140 * 23 21 19 25 25 H 1.48499 * 109.47650 * 210.00170 * 23 21 19 26 26 H 1.48496 * 109.47300 * 330.00428 * 23 21 19 27 27 C 1.50693 * 109.47359 * 270.00110 * 4 3 2 28 28 C 1.38233 * 120.00207 * 144.99441 * 27 4 3 29 29 C 1.38234 * 120.00037 * 179.72405 * 28 27 4 30 30 C 1.38234 * 120.00240 * 0.26327 * 29 28 27 31 31 C 1.38238 * 119.99693 * 359.97438 * 30 29 28 32 32 C 1.38234 * 120.00082 * 0.02562 * 31 30 29 33 33 H 1.09001 * 109.47264 * 300.00009 * 1 2 3 34 34 H 1.08998 * 109.47236 * 60.00233 * 1 2 3 35 35 H 1.09003 * 109.46827 * 179.97438 * 1 2 3 36 36 H 1.09003 * 109.46836 * 240.00296 * 2 1 3 37 37 H 1.08998 * 109.47236 * 119.99767 * 2 1 3 38 38 H 0.97004 * 120.00225 * 0.02562 * 8 6 4 39 39 H 1.08993 * 110.62746 * 0.02562 * 11 9 8 40 40 H 1.08997 * 110.62201 * 123.02461 * 11 9 8 41 41 H 1.09001 * 110.63212 * 190.31300 * 14 12 11 42 42 H 1.08999 * 110.62610 * 313.17760 * 14 12 11 43 43 H 1.08999 * 110.62873 * 241.51135 * 15 14 12 44 44 H 1.09001 * 110.62728 * 118.49148 * 15 14 12 45 45 H 0.97002 * 120.00070 * 179.97438 * 22 21 19 46 46 H 1.08002 * 120.00157 * 0.02562 * 28 27 4 47 47 H 1.07999 * 120.00009 * 180.28389 * 29 28 27 48 48 H 1.07997 * 120.00460 * 180.02562 * 30 29 28 49 49 H 1.08001 * 119.99643 * 179.97438 * 31 30 29 50 50 H 1.07999 * 120.00025 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.8636 0.6016 -0.5130 6 6 3.8347 2.7264 -0.7098 7 8 2.9863 3.5047 -1.0913 8 7 5.1386 2.9939 -0.9213 9 6 5.5311 4.2251 -1.6114 10 1 4.8257 5.0272 -1.3944 11 6 5.6369 3.9850 -3.1376 12 6 7.1330 4.2901 -3.4497 13 1 7.5283 3.8615 -4.3706 14 6 7.2674 5.8369 -3.3160 15 6 7.1617 6.0770 -1.7899 16 6 6.9785 4.6424 -1.2092 17 1 7.2291 4.5152 -0.1561 18 7 7.7921 3.8332 -2.1788 19 6 8.8182 2.9511 -1.9690 20 1 9.1589 2.7482 -0.9645 21 6 9.4199 2.3170 -3.0473 22 7 9.0043 2.5640 -4.2715 23 14 10.8202 1.1143 -2.7612 24 1 10.2695 -0.2533 -2.5829 25 1 11.7342 1.1311 -3.9314 26 1 11.5701 1.5087 -1.5417 27 6 3.9311 1.5001 1.4215 28 6 5.1365 0.9068 1.7469 29 6 5.5980 0.9484 3.0492 30 6 4.8516 1.5785 4.0273 31 6 3.6438 2.1675 3.7029 32 6 3.1822 2.1260 2.4006 33 1 -0.3634 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 -0.3633 -1.0277 -0.0005 36 1 1.8933 -0.5138 -0.8901 37 1 1.8934 -0.5138 0.8900 38 1 5.8171 2.3713 -0.6166 39 1 5.3968 2.9501 -3.3810 40 1 4.9843 4.6691 -3.6800 41 1 8.2342 6.1723 -3.6914 42 1 6.4567 6.3398 -3.8433 43 1 6.2971 6.6989 -1.5580 44 1 8.0761 6.5314 -1.4084 45 1 9.4250 2.1211 -5.0251 46 1 5.7200 0.4150 0.9826 47 1 6.5420 0.4888 3.3025 48 1 5.2123 1.6113 5.0447 49 1 3.0604 2.6595 4.4672 50 1 2.2384 2.5858 2.1472 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111495272.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:27 Heat of formation + Delta-G solvation = -26.684903 kcal Electronic energy + Delta-G solvation = -31342.217178 eV Core-core repulsion = 27334.950643 eV Total energy + Delta-G solvation = -4007.266535 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.61047 -40.64762 -39.48745 -38.48463 -35.34631 -34.44787 -33.47892 -31.86961 -31.54273 -30.96388 -30.47318 -29.56763 -27.56009 -26.07225 -23.97483 -23.44489 -23.30536 -22.39231 -21.53507 -21.22410 -20.30894 -18.84187 -18.49751 -18.13356 -17.83748 -17.07861 -16.78844 -16.65542 -16.09269 -15.80070 -15.73528 -15.56043 -15.30739 -15.09123 -14.55940 -14.32391 -14.27598 -13.73676 -13.70452 -13.62964 -13.50014 -13.25406 -12.90497 -12.87983 -12.80666 -12.74494 -12.69708 -12.27814 -12.11069 -12.06426 -11.95449 -11.90785 -11.88724 -11.69794 -11.28818 -11.02600 -10.93314 -10.83984 -10.56794 -9.99908 -9.84308 -9.68870 -8.85799 -7.73585 -5.13564 0.30399 0.48136 1.50623 1.51953 1.55882 1.59740 1.84857 2.52016 2.74564 3.03041 3.39458 3.45475 3.54547 3.77020 3.82659 4.01370 4.07779 4.10134 4.13596 4.17701 4.27078 4.29427 4.33765 4.44389 4.45666 4.47998 4.59568 4.62014 4.65666 4.68778 4.81282 4.82882 4.90108 4.98518 5.01186 5.08658 5.13747 5.16601 5.18836 5.23480 5.37856 5.52173 5.52963 5.56325 5.59134 5.60234 5.69025 5.90779 6.05299 6.06986 6.28294 6.58475 7.07670 7.20823 7.74515 8.60400 9.33856 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010124 B = 0.003692 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.157497 B = 7581.495029 C = 8273.884427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.046 3.954 3 O -0.373 6.373 4 C 0.122 3.878 5 H 0.104 0.896 6 C 0.516 3.484 7 O -0.568 6.568 8 N -0.696 5.696 9 C 0.140 3.860 10 H 0.083 0.917 11 C -0.133 4.133 12 C 0.141 3.859 13 H 0.118 0.882 14 C -0.132 4.132 15 C -0.119 4.119 16 C 0.129 3.871 17 H 0.100 0.900 18 N -0.608 5.608 19 C -0.213 4.213 20 H 0.086 0.914 21 C -0.065 4.065 22 N -0.948 5.948 23 Si 0.973 3.027 24 H -0.289 1.289 25 H -0.303 1.303 26 H -0.271 1.271 27 C -0.122 4.122 28 C -0.115 4.115 29 C -0.122 4.122 30 C -0.113 4.113 31 C -0.126 4.126 32 C -0.103 4.103 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.406 0.594 39 H 0.035 0.965 40 H 0.065 0.935 41 H 0.039 0.961 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.061 0.939 45 H 0.245 0.755 46 H 0.131 0.869 47 H 0.144 0.856 48 H 0.148 0.852 49 H 0.142 0.858 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.040 -3.965 14.751 18.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.030 4.030 3 O -0.292 6.292 4 C 0.061 3.939 5 H 0.122 0.878 6 C 0.302 3.698 7 O -0.447 6.447 8 N -0.346 5.346 9 C 0.033 3.967 10 H 0.101 0.899 11 C -0.173 4.173 12 C 0.034 3.966 13 H 0.135 0.865 14 C -0.171 4.171 15 C -0.159 4.159 16 C 0.022 3.978 17 H 0.118 0.882 18 N -0.330 5.330 19 C -0.341 4.341 20 H 0.104 0.896 21 C -0.258 4.258 22 N -0.598 5.598 23 Si 0.803 3.197 24 H -0.216 1.216 25 H -0.230 1.230 26 H -0.196 1.196 27 C -0.123 4.123 28 C -0.133 4.133 29 C -0.140 4.140 30 C -0.131 4.131 31 C -0.143 4.143 32 C -0.122 4.122 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.241 0.759 39 H 0.054 0.946 40 H 0.083 0.917 41 H 0.058 0.942 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.079 0.921 45 H 0.054 0.946 46 H 0.149 0.851 47 H 0.162 0.838 48 H 0.166 0.834 49 H 0.160 0.840 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.535 -3.456 14.402 18.773 hybrid contribution 1.220 -1.076 -0.461 1.691 sum -10.315 -4.533 13.941 17.925 Atomic orbital electron populations 1.21735 0.92225 1.03575 1.02697 1.22835 0.96859 0.82284 1.00977 1.88005 1.17863 1.28468 1.94843 1.20603 0.83904 0.96135 0.93301 0.87793 1.20595 0.82674 0.87681 0.78831 1.90648 1.51160 1.50127 1.52805 1.45831 1.06471 1.24103 1.58164 1.22481 0.96768 0.85737 0.91679 0.89925 1.23311 0.98852 0.99512 0.95661 1.23599 0.88660 0.91471 0.92836 0.86512 1.22961 0.99871 0.98001 0.96304 1.22826 1.01261 0.96205 0.95589 1.23337 0.88470 0.91632 0.94369 0.88196 1.46714 1.36682 1.47377 1.02190 1.19340 1.07024 1.14577 0.93204 0.89633 1.25401 1.02460 1.02801 0.95109 1.69715 1.44835 1.47189 0.98026 0.85148 0.79064 0.78964 0.76559 1.21580 1.23022 1.19611 1.19958 0.96816 1.01672 0.93860 1.21216 0.94899 0.99213 0.97986 1.21421 1.00619 0.99454 0.92470 1.21551 0.94346 0.96599 1.00608 1.21419 0.97089 0.99840 0.95989 1.21040 0.99651 0.98053 0.93407 0.91973 0.92726 0.88563 0.92644 0.92095 0.75908 0.94572 0.91673 0.94186 0.91209 0.90255 0.92058 0.94554 0.85062 0.83806 0.83388 0.83995 0.86714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 10.28 71.98 0.74 -1.81 16 2 C 0.05 0.99 6.46 71.98 0.46 1.45 16 3 O -0.37 -10.92 8.67 -129.99 -1.13 -12.04 16 4 C 0.12 3.47 2.73 29.10 0.08 3.55 16 5 H 0.10 2.61 7.70 -2.38 -0.02 2.59 16 6 C 0.52 18.32 7.17 87.66 0.63 18.95 16 7 O -0.57 -24.35 16.15 15.95 0.26 -24.09 16 8 N -0.70 -24.17 5.03 -434.81 -2.19 -26.35 16 9 C 0.14 5.18 2.81 46.63 0.13 5.31 16 10 H 0.08 3.07 7.23 -2.39 -0.02 3.06 16 11 C -0.13 -5.48 6.23 32.21 0.20 -5.28 16 12 C 0.14 6.43 4.72 46.22 0.22 6.65 16 13 H 0.12 6.29 5.52 -2.38 -0.01 6.28 16 14 C -0.13 -5.11 6.44 32.21 0.21 -4.90 16 15 C -0.12 -4.09 6.44 32.21 0.21 -3.88 16 16 C 0.13 4.84 5.06 46.25 0.23 5.07 16 17 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 18 N -0.61 -28.17 2.99 -615.06 -1.84 -30.01 16 19 C -0.21 -10.80 10.59 84.04 0.89 -9.91 16 20 H 0.09 4.11 7.83 -2.91 -0.02 4.08 16 21 C -0.07 -3.46 5.50 84.86 0.47 -2.99 16 22 N -0.95 -53.78 10.47 21.65 0.23 -53.55 16 23 Si 0.97 43.36 29.55 68.60 2.03 45.39 16 24 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 27 C -0.12 -3.07 4.91 -19.87 -0.10 -3.17 16 28 C -0.12 -2.54 9.52 22.27 0.21 -2.33 16 29 C -0.12 -2.30 10.05 22.27 0.22 -2.08 16 30 C -0.11 -1.97 10.05 22.27 0.22 -1.74 16 31 C -0.13 -2.45 10.05 22.27 0.22 -2.22 16 32 C -0.10 -2.53 9.35 22.27 0.21 -2.32 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.10 8.09 -2.39 -0.02 1.08 16 37 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.41 13.52 8.49 -92.70 -0.79 12.73 16 39 H 0.04 1.62 7.98 -2.39 -0.02 1.61 16 40 H 0.06 2.50 7.82 -2.39 -0.02 2.48 16 41 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.07 2.37 7.82 -2.39 -0.02 2.36 16 43 H 0.08 2.32 7.82 -2.39 -0.02 2.30 16 44 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.24 13.73 8.31 -92.71 -0.77 12.96 16 46 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 47 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 48 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 49 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 50 H 0.11 3.05 7.62 -2.91 -0.02 3.03 16 Total: -1.00 -66.63 403.94 2.97 -63.67 By element: Atomic # 1 Polarization: 38.48 SS G_CDS: 0.14 Total: 38.63 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 5.46 Total: -1.64 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -3.80 Total: -109.91 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.87 Total: -36.13 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -66.63 2.97 -63.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111495272.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.981 kcal (2) G-P(sol) polarization free energy of solvation -66.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds