Wall clock time and date at job start Wed Apr 1 2020 02:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42897 * 109.47488 * 2 1 4 4 C 1.35905 * 117.00260 * 180.02562 * 3 2 1 5 5 C 1.38732 * 120.05630 * 179.97438 * 4 3 2 6 6 C 1.38138 * 119.94410 * 180.02562 * 5 4 3 7 7 C 1.38268 * 120.05481 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.94305 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47275 * 89.99594 * 8 7 6 10 10 C 1.50703 * 109.47275 * 179.97438 * 9 8 7 11 11 O 1.21279 * 119.99694 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00219 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00021 * 179.97438 * 12 10 9 14 14 H 1.08997 * 115.51210 * 9.41968 * 13 12 10 15 15 C 1.53000 * 117.44329 * 224.00112 * 13 12 10 16 16 H 1.09002 * 119.53846 * 4.11822 * 15 13 12 17 17 C 1.54385 * 118.12123 * 160.80988 * 15 13 12 18 18 N 1.48146 * 104.61801 * 87.19209 * 17 15 13 19 19 C 1.36935 * 127.84243 * 140.40890 * 18 17 15 20 20 H 1.08006 * 119.99926 * 344.90696 * 19 18 17 21 21 C 1.38811 * 120.00682 * 164.89789 * 19 18 17 22 22 N 1.31626 * 119.99362 * 350.67045 * 21 19 18 23 23 Si 1.86791 * 120.00604 * 170.66932 * 21 19 18 24 24 H 1.48498 * 109.47114 * 60.00063 * 23 21 19 25 25 H 1.48496 * 109.47548 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46905 * 300.00616 * 23 21 19 27 27 C 1.51700 * 104.54742 * 320.19075 * 18 17 15 28 28 C 1.53001 * 117.44175 * 154.83364 * 13 12 10 29 29 H 1.09002 * 119.53600 * 355.88054 * 28 13 12 30 30 C 1.38262 * 120.11239 * 0.24420 * 7 6 5 31 31 C 1.38142 * 120.05583 * 359.46148 * 30 7 6 32 32 H 1.09004 * 109.47415 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47092 * 300.00169 * 1 2 3 34 34 H 1.08993 * 109.47236 * 60.00008 * 1 2 3 35 35 H 1.09003 * 109.47092 * 239.99831 * 2 1 3 36 36 H 1.09006 * 109.47064 * 120.00309 * 2 1 3 37 37 H 1.08001 * 120.02547 * 0.04703 * 5 4 3 38 38 H 1.08004 * 119.97190 * 180.02562 * 6 5 4 39 39 H 1.09001 * 109.46745 * 329.99813 * 8 7 6 40 40 H 1.09000 * 109.46846 * 209.99490 * 8 7 6 41 41 H 1.09001 * 109.47055 * 60.00409 * 9 8 7 42 42 H 1.09003 * 109.47490 * 300.00043 * 9 8 7 43 43 H 0.96998 * 119.99780 * 0.02562 * 12 10 9 44 44 H 1.08996 * 110.40837 * 205.97225 * 17 15 13 45 45 H 1.08997 * 110.40969 * 328.40993 * 17 15 13 46 46 H 0.97004 * 119.99449 * 179.97438 * 22 21 19 47 47 H 1.08997 * 111.95822 * 281.12711 * 27 18 17 48 48 H 1.09000 * 110.49141 * 157.55674 * 27 18 17 49 49 H 1.08003 * 119.97353 * 179.70136 * 30 7 6 50 50 H 1.07999 * 120.03191 * 180.29501 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 3.8852 2.8067 -0.0011 6 6 5.2551 2.9850 -0.0022 7 6 6.0962 1.8876 -0.0032 8 6 7.5903 2.0850 -0.0050 9 6 8.0976 2.1519 1.4369 10 6 9.5917 2.3487 1.4351 11 8 10.1916 2.4281 0.3841 12 7 10.2613 2.4363 2.6015 13 6 11.7138 2.6271 2.5997 14 1 12.1571 2.8479 1.6287 15 6 12.5370 1.7836 3.5754 16 1 12.0399 1.0292 4.1853 17 6 14.0474 1.6201 3.3008 18 7 14.6759 2.7885 3.9599 19 6 15.8489 2.8247 4.6654 20 1 16.3057 1.9054 5.0013 21 6 16.4512 4.0428 4.9489 22 7 16.0011 5.1456 4.3887 23 14 17.9003 4.1171 6.1253 24 1 19.0095 3.2827 5.5975 25 1 18.3582 5.5234 6.2586 26 1 17.4847 3.6041 7.4555 27 6 13.7314 3.9408 3.6743 28 6 12.3393 3.2913 3.8279 29 1 11.6949 3.6602 4.6259 30 6 5.5690 0.6095 -0.0083 31 6 4.1998 0.4258 -0.0011 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 3.2286 3.6642 -0.0004 38 1 5.6694 3.9824 -0.0022 39 1 7.8332 3.0150 -0.5191 40 1 8.0664 1.2503 -0.5194 41 1 7.8547 1.2219 1.9510 42 1 7.6215 2.9866 1.9513 43 1 9.7815 2.3724 3.4421 44 1 14.4153 0.6928 3.7399 45 1 14.2430 1.6379 2.2287 46 1 16.4217 5.9969 4.5871 47 1 13.8591 4.3318 2.6650 48 1 13.8640 4.7342 4.4099 49 1 6.2281 -0.2461 -0.0140 50 1 3.7884 -0.5728 -0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114515443.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:54 Heat of formation + Delta-G solvation = 0.734569 kcal Electronic energy + Delta-G solvation = -28015.992713 eV Core-core repulsion = 24009.915175 eV Total energy + Delta-G solvation = -4006.077537 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.56841 -39.83427 -38.46071 -37.96363 -34.37575 -33.89536 -32.62110 -32.10113 -31.24995 -30.27471 -29.01493 -27.13404 -25.79991 -24.78868 -24.25089 -22.44242 -21.84256 -21.05853 -20.49748 -19.96787 -19.20029 -18.66251 -17.12436 -16.85092 -16.55027 -16.45957 -16.22932 -15.48538 -15.43610 -14.72139 -14.69241 -14.22365 -13.93598 -13.83149 -13.79060 -13.55675 -13.25737 -13.11166 -12.97793 -12.78421 -12.73055 -12.18085 -12.17036 -11.98973 -11.64334 -11.51871 -11.43112 -11.33928 -11.07848 -10.99856 -10.99223 -10.80546 -10.43590 -10.21056 -10.15374 -9.80723 -9.65946 -9.33421 -9.19635 -8.73383 -8.40033 -8.32386 -6.86994 -5.78055 -3.11106 1.00928 1.07523 2.65895 2.77544 3.13187 3.39906 3.44093 3.45092 3.45624 4.31639 4.36246 4.40631 4.46514 4.49457 4.52584 4.57678 4.72520 4.80495 4.87420 4.96873 5.01066 5.10329 5.16233 5.17613 5.26538 5.34287 5.36289 5.39227 5.41636 5.52090 5.56955 5.59142 5.76501 5.80137 5.90072 5.91825 5.99022 6.02899 6.15940 6.24687 6.36792 6.44686 6.53699 6.69824 6.81287 6.90021 7.04196 7.31191 7.51612 7.59724 7.70260 8.15813 8.30511 9.07366 9.73982 10.50873 11.36969 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.037898 B = 0.001380 C = 0.001373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.642197 B =20291.596857 C =20391.540312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.318 6.318 4 C 0.123 3.877 5 C -0.150 4.150 6 C -0.075 4.075 7 C -0.117 4.117 8 C -0.061 4.061 9 C -0.134 4.134 10 C 0.513 3.487 11 O -0.540 6.540 12 N -0.699 5.699 13 C 0.095 3.905 14 H 0.131 0.869 15 C -0.183 4.183 16 H 0.102 0.898 17 C 0.158 3.842 18 N -0.598 5.598 19 C -0.226 4.226 20 H 0.076 0.924 21 C -0.006 4.006 22 N -0.917 5.917 23 Si 0.913 3.087 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.186 3.814 28 C -0.178 4.178 29 H 0.101 0.899 30 C -0.075 4.075 31 C -0.207 4.207 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.399 0.601 44 H 0.051 0.949 45 H 0.026 0.974 46 H 0.255 0.745 47 H 0.032 0.968 48 H 0.091 0.909 49 H 0.125 0.875 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.774 -9.330 -7.574 33.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.078 3.922 5 C -0.169 4.169 6 C -0.093 4.093 7 C -0.117 4.117 8 C -0.099 4.099 9 C -0.174 4.174 10 C 0.300 3.700 11 O -0.417 6.417 12 N -0.348 5.348 13 C -0.011 4.011 14 H 0.149 0.851 15 C -0.204 4.204 16 H 0.120 0.880 17 C 0.031 3.969 18 N -0.323 5.323 19 C -0.354 4.354 20 H 0.094 0.906 21 C -0.203 4.203 22 N -0.563 5.563 23 Si 0.743 3.257 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.061 3.939 28 C -0.200 4.200 29 H 0.119 0.881 30 C -0.093 4.093 31 C -0.226 4.226 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.232 0.768 44 H 0.070 0.930 45 H 0.044 0.956 46 H 0.065 0.935 47 H 0.050 0.950 48 H 0.109 0.891 49 H 0.143 0.857 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -30.286 -8.971 -8.237 32.643 hybrid contribution 0.456 -0.278 1.220 1.332 sum -29.830 -9.249 -7.017 32.010 Atomic orbital electron populations 1.21779 0.92703 1.02912 1.03568 1.22778 0.95901 0.81988 1.01415 1.86065 1.19176 1.29300 1.88723 1.19009 0.82176 0.94230 0.96782 1.20434 0.95248 0.94792 1.06410 1.20927 0.91987 0.98959 0.97446 1.19845 0.95755 0.93025 1.03120 1.20271 0.89877 1.04420 0.95302 1.21668 0.92009 1.04389 0.99322 1.20658 0.89691 0.76019 0.83673 1.90712 1.70180 1.49624 1.31135 1.45443 1.07567 1.73314 1.08467 1.21874 0.78655 1.03493 0.97110 0.85130 1.24356 0.97829 0.94877 1.03383 0.87992 1.21059 0.88008 0.92159 0.95631 1.46023 1.22468 1.03251 1.60533 1.18973 0.97285 0.93095 1.26091 0.90594 1.24863 0.98936 0.95868 1.00635 1.69883 1.43314 0.98005 1.45126 0.86196 0.82060 0.76677 0.80804 1.21017 1.21554 1.21155 1.21671 0.81394 0.91065 0.99776 1.24564 1.00812 0.96434 0.98147 0.88090 1.20885 0.94180 0.96929 0.97341 1.21224 0.94352 0.97963 1.09039 0.90333 0.91484 0.91498 0.92045 0.92022 0.85263 0.85143 0.90042 0.90162 0.88907 0.88769 0.76771 0.93039 0.95633 0.93528 0.95005 0.89051 0.85655 0.85630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 10.28 37.15 0.38 -0.22 16 2 C 0.05 0.30 5.46 37.15 0.20 0.50 16 3 O -0.32 -2.75 10.14 -19.44 -0.20 -2.95 16 4 C 0.12 1.10 6.69 -39.22 -0.26 0.84 16 5 C -0.15 -1.29 9.99 -39.44 -0.39 -1.69 16 6 C -0.08 -0.62 9.69 -39.61 -0.38 -1.00 16 7 C -0.12 -1.00 5.14 -104.60 -0.54 -1.54 16 8 C -0.06 -0.56 4.63 -27.88 -0.13 -0.69 16 9 C -0.13 -1.17 5.68 -27.88 -0.16 -1.33 16 10 C 0.51 6.73 7.83 -10.98 -0.09 6.65 16 11 O -0.54 -9.37 15.55 5.56 0.09 -9.29 16 12 N -0.70 -9.06 5.56 -53.81 -0.30 -9.35 16 13 C 0.09 1.59 5.97 -67.93 -0.41 1.18 16 14 H 0.13 2.51 7.40 -51.93 -0.38 2.13 16 15 C -0.18 -3.26 7.05 -89.30 -0.63 -3.89 16 16 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 17 C 0.16 3.37 7.05 -2.41 -0.02 3.35 16 18 N -0.60 -15.40 3.45 -165.83 -0.57 -15.97 16 19 C -0.23 -6.33 10.36 -15.06 -0.16 -6.48 16 20 H 0.08 2.04 7.85 -52.48 -0.41 1.63 16 21 C -0.01 -0.17 5.41 -17.43 -0.09 -0.26 16 22 N -0.92 -26.87 10.84 55.49 0.60 -26.26 16 23 Si 0.91 21.94 29.56 -169.99 -5.03 16.92 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 C 0.19 4.45 5.91 -0.37 0.00 4.45 16 28 C -0.18 -3.34 6.96 -89.30 -0.62 -3.96 16 29 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 30 C -0.08 -0.61 9.69 -39.61 -0.38 -0.99 16 31 C -0.21 -1.65 9.04 -39.43 -0.36 -2.01 16 32 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 36 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 37 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 38 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 39 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 40 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.40 3.97 8.83 -40.82 -0.36 3.61 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 47 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.09 2.42 6.58 -51.93 -0.34 2.08 16 49 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 50 H 0.13 0.76 6.30 -52.49 -0.33 0.43 16 LS Contribution 411.53 15.07 6.20 6.20 Total: -1.00 -33.42 411.53 -11.33 -44.74 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -8.09 Total: 3.05 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -4.03 Total: -7.09 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -0.27 Total: -51.59 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.11 Total: -12.23 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.42 -11.33 -44.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114515443.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.478 kcal (2) G-P(sol) polarization free energy of solvation -33.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds