Wall clock time and date at job start Wed Apr 1 2020 02:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42897 * 109.47488 * 2 1 4 4 C 1.35905 * 117.00260 * 180.02562 * 3 2 1 5 5 C 1.38732 * 120.05630 * 179.97438 * 4 3 2 6 6 C 1.38138 * 119.94410 * 180.02562 * 5 4 3 7 7 C 1.38268 * 120.05481 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.94305 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47275 * 89.99594 * 8 7 6 10 10 C 1.50703 * 109.47275 * 179.97438 * 9 8 7 11 11 O 1.21279 * 119.99694 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00219 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00021 * 179.97438 * 12 10 9 14 14 H 1.08997 * 115.51210 * 9.41968 * 13 12 10 15 15 C 1.53000 * 117.44329 * 224.00112 * 13 12 10 16 16 H 1.09002 * 119.53846 * 4.11822 * 15 13 12 17 17 C 1.54385 * 118.12123 * 160.80988 * 15 13 12 18 18 N 1.48146 * 104.61801 * 87.19209 * 17 15 13 19 19 C 1.36935 * 127.84243 * 140.40890 * 18 17 15 20 20 H 1.08006 * 119.99926 * 344.90696 * 19 18 17 21 21 C 1.38811 * 120.00682 * 164.89789 * 19 18 17 22 22 N 1.31626 * 119.99362 * 350.67045 * 21 19 18 23 23 Si 1.86791 * 120.00604 * 170.66932 * 21 19 18 24 24 H 1.48498 * 109.47114 * 60.00063 * 23 21 19 25 25 H 1.48496 * 109.47548 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46905 * 300.00616 * 23 21 19 27 27 C 1.51700 * 104.54742 * 320.19075 * 18 17 15 28 28 C 1.53001 * 117.44175 * 154.83364 * 13 12 10 29 29 H 1.09002 * 119.53600 * 355.88054 * 28 13 12 30 30 C 1.38262 * 120.11239 * 0.24420 * 7 6 5 31 31 C 1.38142 * 120.05583 * 359.46148 * 30 7 6 32 32 H 1.09004 * 109.47415 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47092 * 300.00169 * 1 2 3 34 34 H 1.08993 * 109.47236 * 60.00008 * 1 2 3 35 35 H 1.09003 * 109.47092 * 239.99831 * 2 1 3 36 36 H 1.09006 * 109.47064 * 120.00309 * 2 1 3 37 37 H 1.08001 * 120.02547 * 0.04703 * 5 4 3 38 38 H 1.08004 * 119.97190 * 180.02562 * 6 5 4 39 39 H 1.09001 * 109.46745 * 329.99813 * 8 7 6 40 40 H 1.09000 * 109.46846 * 209.99490 * 8 7 6 41 41 H 1.09001 * 109.47055 * 60.00409 * 9 8 7 42 42 H 1.09003 * 109.47490 * 300.00043 * 9 8 7 43 43 H 0.96998 * 119.99780 * 0.02562 * 12 10 9 44 44 H 1.08996 * 110.40837 * 205.97225 * 17 15 13 45 45 H 1.08997 * 110.40969 * 328.40993 * 17 15 13 46 46 H 0.97004 * 119.99449 * 179.97438 * 22 21 19 47 47 H 1.08997 * 111.95822 * 281.12711 * 27 18 17 48 48 H 1.09000 * 110.49141 * 157.55674 * 27 18 17 49 49 H 1.08003 * 119.97353 * 179.70136 * 30 7 6 50 50 H 1.07999 * 120.03191 * 180.29501 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 3.8852 2.8067 -0.0011 6 6 5.2551 2.9850 -0.0022 7 6 6.0962 1.8876 -0.0032 8 6 7.5903 2.0850 -0.0050 9 6 8.0976 2.1519 1.4369 10 6 9.5917 2.3487 1.4351 11 8 10.1916 2.4281 0.3841 12 7 10.2613 2.4363 2.6015 13 6 11.7138 2.6271 2.5997 14 1 12.1571 2.8479 1.6287 15 6 12.5370 1.7836 3.5754 16 1 12.0399 1.0292 4.1853 17 6 14.0474 1.6201 3.3008 18 7 14.6759 2.7885 3.9599 19 6 15.8489 2.8247 4.6654 20 1 16.3057 1.9054 5.0013 21 6 16.4512 4.0428 4.9489 22 7 16.0011 5.1456 4.3887 23 14 17.9003 4.1171 6.1253 24 1 19.0095 3.2827 5.5975 25 1 18.3582 5.5234 6.2586 26 1 17.4847 3.6041 7.4555 27 6 13.7314 3.9408 3.6743 28 6 12.3393 3.2913 3.8279 29 1 11.6949 3.6602 4.6259 30 6 5.5690 0.6095 -0.0083 31 6 4.1998 0.4258 -0.0011 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 3.2286 3.6642 -0.0004 38 1 5.6694 3.9824 -0.0022 39 1 7.8332 3.0150 -0.5191 40 1 8.0664 1.2503 -0.5194 41 1 7.8547 1.2219 1.9510 42 1 7.6215 2.9866 1.9513 43 1 9.7815 2.3724 3.4421 44 1 14.4153 0.6928 3.7399 45 1 14.2430 1.6379 2.2287 46 1 16.4217 5.9969 4.5871 47 1 13.8591 4.3318 2.6650 48 1 13.8640 4.7342 4.4099 49 1 6.2281 -0.2461 -0.0140 50 1 3.7884 -0.5728 -0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114515443.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:53 Heat of formation + Delta-G solvation = -18.740558 kcal Electronic energy + Delta-G solvation = -28016.837218 eV Core-core repulsion = 24009.915175 eV Total energy + Delta-G solvation = -4006.922042 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.24156 -40.95894 -39.76646 -38.71559 -35.96861 -34.63884 -34.24099 -32.61507 -32.02678 -31.78879 -29.78303 -28.90526 -27.58875 -25.62965 -24.83417 -23.48060 -22.88573 -21.96744 -21.83213 -21.11836 -20.78821 -19.20646 -18.84747 -18.10215 -17.60047 -17.08741 -17.01648 -16.70517 -16.31621 -16.15240 -15.65487 -15.36196 -15.05798 -14.83719 -14.64381 -14.53267 -14.39304 -14.28047 -13.85705 -13.72094 -13.48899 -13.32540 -13.30348 -13.17210 -12.90509 -12.67648 -12.60580 -12.51645 -12.27908 -12.16279 -12.05424 -11.99847 -11.82652 -11.62312 -11.57643 -11.55135 -10.98052 -10.80891 -10.67960 -9.92560 -9.67467 -9.01552 -8.92817 -7.90599 -5.26155 0.41886 0.45335 1.47365 1.50522 1.57228 1.60290 2.03853 2.29609 2.49784 2.81346 2.87427 3.30260 3.52821 3.68147 3.83900 3.85320 3.94356 3.97979 4.06234 4.06998 4.12318 4.15284 4.26940 4.30449 4.37663 4.39501 4.47154 4.51734 4.53506 4.65966 4.71263 4.86211 4.92457 4.94471 4.94995 4.96839 4.98972 5.15615 5.20970 5.24797 5.28340 5.37030 5.41234 5.43907 5.45356 5.56907 5.64548 5.74450 5.87352 6.12818 6.49421 6.58287 6.95880 7.29159 7.65734 8.45718 9.23831 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.037898 B = 0.001380 C = 0.001373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.642197 B =20291.596857 C =20391.540312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.336 6.336 4 C 0.110 3.890 5 C -0.164 4.164 6 C -0.079 4.079 7 C -0.122 4.122 8 C -0.056 4.056 9 C -0.121 4.121 10 C 0.512 3.488 11 O -0.586 6.586 12 N -0.686 5.686 13 C 0.116 3.884 14 H 0.103 0.897 15 C -0.166 4.166 16 H 0.136 0.864 17 C 0.150 3.850 18 N -0.622 5.622 19 C -0.242 4.242 20 H 0.082 0.918 21 C -0.062 4.062 22 N -0.949 5.949 23 Si 0.981 3.019 24 H -0.276 1.276 25 H -0.294 1.294 26 H -0.275 1.275 27 C 0.187 3.813 28 C -0.178 4.178 29 H 0.126 0.874 30 C -0.079 4.079 31 C -0.210 4.210 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.135 0.865 38 H 0.142 0.858 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.419 0.581 44 H 0.063 0.937 45 H 0.015 0.985 46 H 0.250 0.750 47 H 0.003 0.997 48 H 0.060 0.940 49 H 0.140 0.860 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.786 -11.227 -6.365 35.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.251 6.251 4 C 0.065 3.935 5 C -0.182 4.182 6 C -0.097 4.097 7 C -0.122 4.122 8 C -0.094 4.094 9 C -0.160 4.160 10 C 0.301 3.699 11 O -0.466 6.466 12 N -0.336 5.336 13 C 0.009 3.991 14 H 0.120 0.880 15 C -0.187 4.187 16 H 0.154 0.846 17 C 0.024 3.976 18 N -0.348 5.348 19 C -0.371 4.371 20 H 0.100 0.900 21 C -0.256 4.256 22 N -0.597 5.597 23 Si 0.809 3.191 24 H -0.202 1.202 25 H -0.220 1.220 26 H -0.201 1.201 27 C 0.063 3.937 28 C -0.199 4.199 29 H 0.144 0.856 30 C -0.097 4.097 31 C -0.228 4.228 32 H 0.117 0.883 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.152 0.848 38 H 0.159 0.841 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.256 0.744 44 H 0.081 0.919 45 H 0.033 0.967 46 H 0.059 0.941 47 H 0.021 0.979 48 H 0.079 0.921 49 H 0.158 0.842 50 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -32.350 -10.906 -7.011 34.851 hybrid contribution 1.041 0.273 0.734 1.303 sum -31.309 -10.632 -6.277 33.656 Atomic orbital electron populations 1.21808 0.91719 1.04100 1.03122 1.23026 0.96748 0.80881 1.02195 1.86051 1.19106 1.31176 1.88728 1.19230 0.82585 0.94692 0.96963 1.20617 0.95618 0.95189 1.06785 1.21080 0.91894 0.99548 0.97148 1.19796 0.95151 0.93442 1.03861 1.20172 0.90348 1.03403 0.95472 1.21675 0.88170 1.06619 0.99541 1.21473 0.91321 0.74437 0.82666 1.90708 1.71465 1.51594 1.32854 1.45276 1.05626 1.72944 1.09749 1.21371 0.80943 1.01828 0.94973 0.87954 1.24261 0.95819 0.94825 1.03810 0.84627 1.21199 0.90365 0.91244 0.94746 1.46347 1.22598 1.04948 1.60865 1.19394 0.98206 0.93466 1.26027 0.90023 1.25717 1.01869 0.95530 1.02468 1.70089 1.44697 0.98270 1.46642 0.85124 0.78853 0.76293 0.78875 1.20223 1.22014 1.20109 1.21406 0.84603 0.90644 0.97069 1.24249 0.98788 0.96603 1.00270 0.85608 1.21092 0.94508 0.97226 0.96872 1.21432 0.94273 0.98599 1.08546 0.88320 0.91900 0.91960 0.91283 0.91133 0.84758 0.84058 0.91316 0.91125 0.86244 0.86474 0.74394 0.91890 0.96682 0.94134 0.97862 0.92146 0.84238 0.83907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 71.98 0.74 -0.23 16 2 C 0.05 0.43 5.46 71.98 0.39 0.83 16 3 O -0.34 -5.47 10.14 -92.48 -0.94 -6.41 16 4 C 0.11 1.84 6.69 22.51 0.15 1.99 16 5 C -0.16 -2.65 9.99 22.36 0.22 -2.42 16 6 C -0.08 -1.18 9.69 22.25 0.22 -0.97 16 7 C -0.12 -1.86 5.14 -19.85 -0.10 -1.96 16 8 C -0.06 -0.94 4.63 29.85 0.14 -0.80 16 9 C -0.12 -1.74 5.68 29.85 0.17 -1.57 16 10 C 0.51 12.39 7.83 87.66 0.69 13.07 16 11 O -0.59 -20.13 15.55 -3.03 -0.05 -20.17 16 12 N -0.69 -15.85 5.56 -442.54 -2.46 -18.32 16 13 C 0.12 3.76 5.97 44.99 0.27 4.03 16 14 H 0.10 4.00 7.40 -2.39 -0.02 3.99 16 15 C -0.17 -5.57 7.05 -9.94 -0.07 -5.64 16 16 H 0.14 3.72 8.14 -2.39 -0.02 3.70 16 17 C 0.15 6.35 7.05 86.53 0.61 6.96 16 18 N -0.62 -32.57 3.45 -678.56 -2.34 -34.91 16 19 C -0.24 -13.70 10.36 84.03 0.87 -12.83 16 20 H 0.08 4.39 7.85 -2.91 -0.02 4.37 16 21 C -0.06 -3.55 5.41 84.86 0.46 -3.09 16 22 N -0.95 -57.45 10.84 21.65 0.23 -57.22 16 23 Si 0.98 45.56 29.56 68.60 2.03 47.59 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 25 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 26 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 27 C 0.19 9.29 5.91 85.82 0.51 9.80 16 28 C -0.18 -6.49 6.96 -9.94 -0.07 -6.56 16 29 H 0.13 3.98 8.14 -2.39 -0.02 3.96 16 30 C -0.08 -1.10 9.69 22.25 0.22 -0.89 16 31 C -0.21 -2.94 9.04 22.37 0.20 -2.74 16 32 H 0.10 0.23 8.14 -2.38 -0.02 0.21 16 33 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.07 0.53 7.66 -2.39 -0.02 0.51 16 36 H 0.07 0.53 7.66 -2.38 -0.02 0.51 16 37 H 0.13 1.91 8.06 -2.91 -0.02 1.89 16 38 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 39 H 0.07 1.32 8.04 -2.39 -0.02 1.30 16 40 H 0.07 1.32 8.04 -2.39 -0.02 1.30 16 41 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.42 6.57 8.83 -92.71 -0.82 5.75 16 44 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 47 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 48 H 0.06 3.34 6.58 -2.39 -0.02 3.32 16 49 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 50 H 0.14 1.39 6.30 -2.91 -0.02 1.37 16 Total: -1.00 -75.16 411.53 2.20 -72.96 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.12 Total: 19.52 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 5.61 Total: -3.03 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -4.57 Total: -110.45 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.98 Total: -26.58 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -75.16 2.20 -72.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114515443.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.215 kcal (2) G-P(sol) polarization free energy of solvation -75.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds