Wall clock time and date at job start Wed Apr 1 2020 02:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42894 * 109.47450 * 2 1 4 4 C 1.35899 * 117.00281 * 180.02562 * 3 2 1 5 5 C 1.38757 * 120.05460 * 359.72467 * 4 3 2 6 6 C 1.38121 * 119.94087 * 179.74357 * 5 4 3 7 7 C 1.38292 * 120.05952 * 0.50784 * 6 5 4 8 8 C 1.38250 * 120.10969 * 359.77068 * 7 6 5 9 9 C 1.50693 * 119.97184 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.47320 * 270.02206 * 9 8 7 11 11 C 1.50705 * 109.47043 * 179.97438 * 10 9 8 12 12 O 1.21278 * 119.99920 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99645 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99844 * 180.02562 * 13 11 10 15 15 H 1.09002 * 115.51365 * 350.58147 * 14 13 11 16 16 C 1.52995 * 117.44265 * 205.16822 * 14 13 11 17 17 H 1.08993 * 119.54248 * 4.11783 * 16 14 13 18 18 C 1.54388 * 118.12340 * 159.20992 * 16 14 13 19 19 N 1.51693 * 102.89935 * 88.04230 * 18 16 14 20 20 C 1.36933 * 127.61116 * 140.53387 * 19 18 16 21 21 H 1.08003 * 120.00067 * 194.72866 * 20 19 18 22 22 C 1.38819 * 120.00269 * 14.73363 * 20 19 18 23 23 N 1.31611 * 119.99596 * 9.00982 * 22 20 19 24 24 Si 1.86800 * 119.99880 * 189.00959 * 22 20 19 25 25 H 1.48495 * 109.47397 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46909 * 120.00073 * 24 22 20 27 27 H 1.48498 * 109.47039 * 239.99883 * 24 22 20 28 28 C 1.48138 * 104.54627 * 320.31829 * 19 18 16 29 29 C 1.52991 * 117.44759 * 135.99636 * 14 13 11 30 30 H 1.09004 * 119.54025 * 355.88073 * 29 14 13 31 31 C 1.38163 * 120.05028 * 359.97438 * 8 7 6 32 32 H 1.08996 * 109.47244 * 59.99618 * 1 2 3 33 33 H 1.08997 * 109.47398 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46806 * 300.00104 * 1 2 3 35 35 H 1.08996 * 109.47244 * 120.00382 * 2 1 3 36 36 H 1.09004 * 109.46806 * 239.99896 * 2 1 3 37 37 H 1.07997 * 120.02704 * 359.97438 * 5 4 3 38 38 H 1.07999 * 119.96985 * 180.25451 * 6 5 4 39 39 H 1.07997 * 119.94669 * 179.74294 * 7 6 5 40 40 H 1.09003 * 109.46812 * 30.02684 * 9 8 7 41 41 H 1.09004 * 109.46844 * 150.01858 * 9 8 7 42 42 H 1.09000 * 109.47240 * 299.99600 * 10 9 8 43 43 H 1.08996 * 109.47228 * 60.00234 * 10 9 8 44 44 H 0.96998 * 120.00695 * 0.02562 * 13 11 10 45 45 H 1.09000 * 110.41034 * 205.97429 * 18 16 14 46 46 H 1.09009 * 110.40504 * 328.40574 * 18 16 14 47 47 H 0.96998 * 119.99843 * 179.97438 * 23 22 20 48 48 H 1.08997 * 110.41151 * 281.01930 * 28 19 18 49 49 H 1.09006 * 110.40859 * 158.59158 * 28 19 18 50 50 H 1.08000 * 120.02317 * 180.02562 * 31 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 4.2000 0.4256 0.0047 6 6 5.5689 0.6093 -0.0012 7 6 6.0963 1.8877 -0.0018 8 6 5.2552 2.9849 -0.0012 9 6 5.8333 4.3766 -0.0012 10 6 6.0301 4.8471 1.4413 11 6 6.6088 6.2386 1.4412 12 8 6.8405 6.7989 0.3908 13 7 6.8679 6.8607 2.6084 14 6 7.4299 8.2136 2.6084 15 1 7.7582 8.5856 1.6378 16 6 8.2343 8.6430 3.8369 17 1 8.4231 7.9239 4.6339 18 6 9.2234 9.8186 3.6847 19 7 8.3567 11.0299 3.9721 20 6 8.6969 12.1522 4.6790 21 1 7.9283 12.8328 5.0145 22 6 10.0297 12.4153 4.9644 23 7 10.9771 11.6894 4.4097 24 14 10.4784 13.7996 6.1357 25 1 9.2394 14.4586 6.6210 26 1 11.2294 13.2464 7.2912 27 1 11.3232 14.7938 5.4264 28 6 7.0649 10.7279 3.3129 29 6 6.8299 9.2265 3.5854 30 1 5.9723 8.9421 4.1951 31 6 3.8852 2.8065 -0.0006 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8934 -0.5139 0.8899 36 1 1.8933 -0.5139 -0.8900 37 1 3.7886 -0.5729 0.0096 38 1 6.2280 -0.2462 -0.0013 39 1 7.1670 2.0292 -0.0022 40 1 6.7941 4.3708 -0.5159 41 1 5.1503 5.0536 -0.5143 42 1 5.0693 4.8529 1.9559 43 1 6.7131 4.1701 1.9543 44 1 6.6823 6.4127 3.4485 45 1 10.0242 9.7392 4.4200 46 1 9.6341 9.8415 2.6752 47 1 11.9084 11.8735 4.6088 48 1 7.1326 10.9135 2.2410 49 1 6.2652 11.3238 3.7529 50 1 3.2286 3.6639 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115321837.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:00 Heat of formation + Delta-G solvation = 0.779626 kcal Electronic energy + Delta-G solvation = -28141.234015 eV Core-core repulsion = 24135.158432 eV Total energy + Delta-G solvation = -4006.075583 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.57323 -39.82764 -38.43868 -37.95167 -34.38544 -34.01379 -32.60545 -32.44340 -30.54449 -30.03390 -29.44263 -27.12814 -25.95435 -25.04958 -23.71771 -22.86387 -21.81557 -20.92921 -20.49342 -19.97618 -19.19463 -18.25073 -16.96400 -16.79142 -16.53770 -16.47065 -16.37690 -16.21076 -15.44508 -14.70552 -14.61445 -14.24839 -13.87605 -13.79034 -13.67155 -13.34448 -13.24377 -13.13493 -12.97835 -12.73519 -12.71742 -12.18143 -12.10300 -11.98571 -11.82602 -11.50052 -11.44874 -11.26479 -11.13853 -11.04566 -10.99424 -10.83905 -10.42040 -10.18597 -10.11841 -9.82631 -9.66413 -9.21236 -9.10806 -8.74125 -8.52197 -8.32013 -6.86760 -5.78037 -3.11030 0.96506 1.12821 2.66036 2.76984 3.13467 3.38916 3.44550 3.45626 3.47390 4.32063 4.35772 4.41358 4.41905 4.48181 4.58825 4.65332 4.74858 4.76500 4.84457 4.96020 5.01732 5.09638 5.17076 5.18711 5.28532 5.31240 5.36388 5.37857 5.40216 5.53636 5.57315 5.60585 5.75973 5.80630 5.90822 5.91699 5.99242 6.10692 6.16372 6.25004 6.33135 6.44652 6.54366 6.70490 6.81723 6.90680 7.06025 7.31659 7.52502 7.59996 7.71142 8.15900 8.30583 9.07671 9.74124 10.50913 11.37072 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.028931 B = 0.001467 C = 0.001429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.603956 B =19081.890846 C =19587.706307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.317 6.317 4 C 0.130 3.870 5 C -0.215 4.215 6 C -0.078 4.078 7 C -0.153 4.153 8 C -0.040 4.040 9 C -0.066 4.066 10 C -0.133 4.133 11 C 0.514 3.486 12 O -0.539 6.539 13 N -0.699 5.699 14 C 0.095 3.905 15 H 0.131 0.869 16 C -0.178 4.178 17 H 0.101 0.899 18 C 0.185 3.815 19 N -0.599 5.599 20 C -0.224 4.224 21 H 0.077 0.923 22 C -0.007 4.007 23 N -0.917 5.917 24 Si 0.912 3.088 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.158 3.842 29 C -0.183 4.183 30 H 0.102 0.898 31 C -0.149 4.149 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.399 0.601 45 H 0.092 0.908 46 H 0.032 0.968 47 H 0.253 0.747 48 H 0.026 0.974 49 H 0.051 0.949 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.579 -27.820 -7.584 33.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.231 6.231 4 C 0.085 3.915 5 C -0.234 4.234 6 C -0.096 4.096 7 C -0.171 4.171 8 C -0.040 4.040 9 C -0.104 4.104 10 C -0.173 4.173 11 C 0.300 3.700 12 O -0.416 6.416 13 N -0.348 5.348 14 C -0.011 4.011 15 H 0.149 0.851 16 C -0.200 4.200 17 H 0.119 0.881 18 C 0.061 3.939 19 N -0.323 5.323 20 C -0.352 4.352 21 H 0.095 0.905 22 C -0.204 4.204 23 N -0.563 5.563 24 Si 0.742 3.258 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.217 1.217 28 C 0.031 3.969 29 C -0.204 4.204 30 H 0.120 0.880 31 C -0.167 4.167 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.232 0.768 45 H 0.110 0.890 46 H 0.050 0.950 47 H 0.064 0.936 48 H 0.044 0.956 49 H 0.070 0.930 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.378 -27.106 -8.241 32.725 hybrid contribution 0.222 0.031 1.200 1.221 sum -16.157 -27.076 -7.040 32.306 Atomic orbital electron populations 1.21783 0.92669 1.02888 1.03666 1.22776 0.95938 0.81977 1.01336 1.86079 1.19119 1.29289 1.88630 1.18969 0.82203 0.94102 0.96202 1.21218 0.94496 0.97899 1.09773 1.20931 0.94260 0.97293 0.97148 1.21025 0.99978 0.91935 1.04204 1.19717 0.92248 0.95569 0.96464 1.20361 1.02686 0.91659 0.95690 1.21638 1.02877 0.93853 0.98982 1.20612 0.77869 0.87794 0.83690 1.90714 1.52364 1.67335 1.31192 1.45433 1.64489 1.16387 1.08444 1.21874 1.00621 0.81530 0.97104 0.85121 1.24564 0.95922 1.01329 0.98143 0.88088 1.21682 0.91605 0.80874 0.99783 1.46043 1.08733 1.17099 1.60461 1.19067 0.91591 0.98759 1.25791 0.90478 1.24866 0.95560 0.99259 1.00718 1.69890 0.99187 1.41865 1.45404 0.86049 0.78114 0.81291 0.80324 1.20405 1.21688 1.21714 1.21060 0.90202 0.89950 0.95638 1.24354 0.97107 0.95596 1.03368 0.87972 1.20347 0.94724 0.94911 1.06751 0.91454 0.90352 0.91426 0.92057 0.92085 0.85747 0.85792 0.85671 0.89651 0.89783 0.88713 0.88674 0.76750 0.88984 0.95018 0.93633 0.95620 0.93027 0.85127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 10.28 37.16 0.38 -0.27 16 2 C 0.05 0.31 5.46 37.16 0.20 0.51 16 3 O -0.32 -2.87 10.14 -19.42 -0.20 -3.06 16 4 C 0.13 1.21 6.69 -39.22 -0.26 0.95 16 5 C -0.22 -1.69 9.04 -39.43 -0.36 -2.05 16 6 C -0.08 -0.59 10.04 -39.60 -0.40 -0.98 16 7 C -0.15 -1.25 9.70 -39.56 -0.38 -1.64 16 8 C -0.04 -0.36 5.13 -104.65 -0.54 -0.89 16 9 C -0.07 -0.62 4.63 -27.89 -0.13 -0.75 16 10 C -0.13 -1.19 5.68 -27.88 -0.16 -1.35 16 11 C 0.51 6.79 7.83 -10.98 -0.09 6.71 16 12 O -0.54 -9.40 15.55 5.56 0.09 -9.31 16 13 N -0.70 -9.10 5.56 -53.81 -0.30 -9.40 16 14 C 0.09 1.59 5.97 -67.94 -0.41 1.19 16 15 H 0.13 2.52 7.40 -51.93 -0.38 2.14 16 16 C -0.18 -3.34 6.96 -89.30 -0.62 -3.96 16 17 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 18 C 0.19 4.45 5.92 -0.37 0.00 4.44 16 19 N -0.60 -15.45 3.45 -165.83 -0.57 -16.02 16 20 C -0.22 -6.27 10.36 -15.06 -0.16 -6.42 16 21 H 0.08 2.09 7.84 -52.48 -0.41 1.68 16 22 C -0.01 -0.20 5.42 -17.43 -0.09 -0.30 16 23 N -0.92 -26.91 10.82 55.49 0.60 -26.31 16 24 Si 0.91 21.99 29.56 -169.99 -5.03 16.97 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 C 0.16 3.38 7.05 -2.41 -0.02 3.36 16 29 C -0.18 -3.27 7.05 -89.30 -0.63 -3.90 16 30 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 31 C -0.15 -1.40 9.64 -39.43 -0.38 -1.78 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 36 H 0.06 0.29 7.67 -51.93 -0.40 -0.11 16 37 H 0.12 0.72 6.30 -52.49 -0.33 0.39 16 38 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.08 0.85 8.04 -51.93 -0.42 0.44 16 41 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.40 4.00 8.83 -40.82 -0.36 3.64 16 45 H 0.09 2.44 6.56 -51.93 -0.34 2.10 16 46 H 0.03 0.80 8.14 -51.92 -0.42 0.38 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 48 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 50 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 411.50 15.07 6.20 6.20 Total: -1.00 -33.50 411.50 -11.33 -44.83 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -8.09 Total: 3.24 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -4.03 Total: -7.13 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.27 Total: -51.73 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.11 Total: -12.38 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.50 -11.33 -44.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115321837.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.612 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds