Wall clock time and date at job start Wed Apr 1 2020 02:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42894 * 109.47450 * 2 1 4 4 C 1.35899 * 117.00281 * 180.02562 * 3 2 1 5 5 C 1.38757 * 120.05460 * 359.72467 * 4 3 2 6 6 C 1.38121 * 119.94087 * 179.74357 * 5 4 3 7 7 C 1.38292 * 120.05952 * 0.50784 * 6 5 4 8 8 C 1.38250 * 120.10969 * 359.77068 * 7 6 5 9 9 C 1.50693 * 119.97184 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.47320 * 270.02206 * 9 8 7 11 11 C 1.50705 * 109.47043 * 179.97438 * 10 9 8 12 12 O 1.21278 * 119.99920 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99645 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99844 * 180.02562 * 13 11 10 15 15 H 1.09002 * 115.51365 * 350.58147 * 14 13 11 16 16 C 1.52995 * 117.44265 * 205.16822 * 14 13 11 17 17 H 1.08993 * 119.54248 * 4.11783 * 16 14 13 18 18 C 1.54388 * 118.12340 * 159.20992 * 16 14 13 19 19 N 1.51693 * 102.89935 * 88.04230 * 18 16 14 20 20 C 1.36933 * 127.61116 * 140.53387 * 19 18 16 21 21 H 1.08003 * 120.00067 * 194.72866 * 20 19 18 22 22 C 1.38819 * 120.00269 * 14.73363 * 20 19 18 23 23 N 1.31611 * 119.99596 * 9.00982 * 22 20 19 24 24 Si 1.86800 * 119.99880 * 189.00959 * 22 20 19 25 25 H 1.48495 * 109.47397 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46909 * 120.00073 * 24 22 20 27 27 H 1.48498 * 109.47039 * 239.99883 * 24 22 20 28 28 C 1.48138 * 104.54627 * 320.31829 * 19 18 16 29 29 C 1.52991 * 117.44759 * 135.99636 * 14 13 11 30 30 H 1.09004 * 119.54025 * 355.88073 * 29 14 13 31 31 C 1.38163 * 120.05028 * 359.97438 * 8 7 6 32 32 H 1.08996 * 109.47244 * 59.99618 * 1 2 3 33 33 H 1.08997 * 109.47398 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46806 * 300.00104 * 1 2 3 35 35 H 1.08996 * 109.47244 * 120.00382 * 2 1 3 36 36 H 1.09004 * 109.46806 * 239.99896 * 2 1 3 37 37 H 1.07997 * 120.02704 * 359.97438 * 5 4 3 38 38 H 1.07999 * 119.96985 * 180.25451 * 6 5 4 39 39 H 1.07997 * 119.94669 * 179.74294 * 7 6 5 40 40 H 1.09003 * 109.46812 * 30.02684 * 9 8 7 41 41 H 1.09004 * 109.46844 * 150.01858 * 9 8 7 42 42 H 1.09000 * 109.47240 * 299.99600 * 10 9 8 43 43 H 1.08996 * 109.47228 * 60.00234 * 10 9 8 44 44 H 0.96998 * 120.00695 * 0.02562 * 13 11 10 45 45 H 1.09000 * 110.41034 * 205.97429 * 18 16 14 46 46 H 1.09009 * 110.40504 * 328.40574 * 18 16 14 47 47 H 0.96998 * 119.99843 * 179.97438 * 23 22 20 48 48 H 1.08997 * 110.41151 * 281.01930 * 28 19 18 49 49 H 1.09006 * 110.40859 * 158.59158 * 28 19 18 50 50 H 1.08000 * 120.02317 * 180.02562 * 31 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 4.2000 0.4256 0.0047 6 6 5.5689 0.6093 -0.0012 7 6 6.0963 1.8877 -0.0018 8 6 5.2552 2.9849 -0.0012 9 6 5.8333 4.3766 -0.0012 10 6 6.0301 4.8471 1.4413 11 6 6.6088 6.2386 1.4412 12 8 6.8405 6.7989 0.3908 13 7 6.8679 6.8607 2.6084 14 6 7.4299 8.2136 2.6084 15 1 7.7582 8.5856 1.6378 16 6 8.2343 8.6430 3.8369 17 1 8.4231 7.9239 4.6339 18 6 9.2234 9.8186 3.6847 19 7 8.3567 11.0299 3.9721 20 6 8.6969 12.1522 4.6790 21 1 7.9283 12.8328 5.0145 22 6 10.0297 12.4153 4.9644 23 7 10.9771 11.6894 4.4097 24 14 10.4784 13.7996 6.1357 25 1 9.2394 14.4586 6.6210 26 1 11.2294 13.2464 7.2912 27 1 11.3232 14.7938 5.4264 28 6 7.0649 10.7279 3.3129 29 6 6.8299 9.2265 3.5854 30 1 5.9723 8.9421 4.1951 31 6 3.8852 2.8065 -0.0006 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8934 -0.5139 0.8899 36 1 1.8933 -0.5139 -0.8900 37 1 3.7886 -0.5729 0.0096 38 1 6.2280 -0.2462 -0.0013 39 1 7.1670 2.0292 -0.0022 40 1 6.7941 4.3708 -0.5159 41 1 5.1503 5.0536 -0.5143 42 1 5.0693 4.8529 1.9559 43 1 6.7131 4.1701 1.9543 44 1 6.6823 6.4127 3.4485 45 1 10.0242 9.7392 4.4200 46 1 9.6341 9.8415 2.6752 47 1 11.9084 11.8735 4.6088 48 1 7.1326 10.9135 2.2410 49 1 6.2652 11.3238 3.7529 50 1 3.2286 3.6639 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115321837.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:59 Heat of formation + Delta-G solvation = -18.833180 kcal Electronic energy + Delta-G solvation = -28142.084490 eV Core-core repulsion = 24135.158432 eV Total energy + Delta-G solvation = -4006.926058 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.26238 -40.96476 -39.77237 -38.69660 -35.98096 -34.77878 -34.26868 -32.87443 -32.12222 -30.86093 -30.16237 -28.90887 -27.65957 -26.03034 -24.32763 -23.48952 -23.32720 -21.95471 -21.69158 -21.12372 -20.79258 -18.87323 -18.85019 -17.91719 -17.58785 -17.09609 -17.01922 -16.96924 -16.70911 -16.29829 -15.69386 -15.41695 -15.01311 -14.85034 -14.63012 -14.45650 -14.32439 -14.03393 -13.92884 -13.71211 -13.43471 -13.35837 -13.31075 -13.17460 -12.90046 -12.74721 -12.58056 -12.53425 -12.42471 -12.13159 -11.99591 -11.96484 -11.83739 -11.63888 -11.62770 -11.60012 -11.00392 -10.83713 -10.69103 -9.76327 -9.68310 -9.12593 -8.93391 -7.91104 -5.26658 0.35163 0.51630 1.47298 1.47738 1.58385 1.59140 2.01753 2.28121 2.49023 2.81489 2.86986 3.29883 3.51772 3.63441 3.83872 3.88726 3.93777 3.96054 4.06293 4.09066 4.13949 4.14995 4.19921 4.30144 4.38160 4.38712 4.46807 4.49091 4.52984 4.63489 4.67275 4.85594 4.85741 4.93992 4.94267 4.98555 4.98848 5.10756 5.20231 5.23361 5.27977 5.38902 5.40990 5.45346 5.52468 5.56120 5.64672 5.70435 5.86844 6.12546 6.50233 6.56799 6.95820 7.27462 7.65198 8.45097 9.23681 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.028931 B = 0.001467 C = 0.001429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.603956 B =19081.890846 C =19587.706307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 O -0.337 6.337 4 C 0.116 3.884 5 C -0.217 4.217 6 C -0.079 4.079 7 C -0.160 4.160 8 C -0.043 4.043 9 C -0.062 4.062 10 C -0.120 4.120 11 C 0.513 3.487 12 O -0.586 6.586 13 N -0.685 5.685 14 C 0.116 3.884 15 H 0.103 0.897 16 C -0.177 4.177 17 H 0.127 0.873 18 C 0.187 3.813 19 N -0.623 5.623 20 C -0.239 4.239 21 H 0.082 0.918 22 C -0.064 4.064 23 N -0.949 5.949 24 Si 0.981 3.019 25 H -0.264 1.264 26 H -0.289 1.289 27 H -0.293 1.293 28 C 0.150 3.850 29 C -0.167 4.167 30 H 0.136 0.864 31 C -0.165 4.165 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.137 0.863 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.419 0.581 45 H 0.061 0.939 46 H 0.004 0.996 47 H 0.250 0.750 48 H 0.016 0.984 49 H 0.062 0.938 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.123 -30.253 -6.365 35.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.252 6.252 4 C 0.071 3.929 5 C -0.235 4.235 6 C -0.097 4.097 7 C -0.178 4.178 8 C -0.043 4.043 9 C -0.100 4.100 10 C -0.159 4.159 11 C 0.302 3.698 12 O -0.465 6.465 13 N -0.335 5.335 14 C 0.009 3.991 15 H 0.121 0.879 16 C -0.198 4.198 17 H 0.144 0.856 18 C 0.062 3.938 19 N -0.348 5.348 20 C -0.367 4.367 21 H 0.100 0.900 22 C -0.257 4.257 23 N -0.598 5.598 24 Si 0.809 3.191 25 H -0.189 1.189 26 H -0.216 1.216 27 H -0.221 1.221 28 C 0.025 3.975 29 C -0.188 4.188 30 H 0.153 0.847 31 C -0.184 4.184 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.162 0.838 38 H 0.166 0.834 39 H 0.155 0.845 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.135 0.865 43 H 0.139 0.861 44 H 0.256 0.744 45 H 0.080 0.920 46 H 0.022 0.978 47 H 0.059 0.941 48 H 0.033 0.967 49 H 0.081 0.919 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -17.973 -29.579 -7.004 35.313 hybrid contribution 0.656 0.749 0.709 1.223 sum -17.316 -28.830 -6.295 34.214 Atomic orbital electron populations 1.21815 0.91826 1.04124 1.03060 1.23032 0.96674 0.80802 1.02269 1.86058 1.19139 1.31308 1.88703 1.19148 0.82637 0.94476 0.96636 1.21489 0.94633 0.98450 1.08943 1.21250 0.94507 0.97838 0.96089 1.21241 1.00577 0.92040 1.03958 1.19626 0.92161 0.95358 0.97195 1.20265 1.01878 0.91940 0.95906 1.21631 1.04176 0.90970 0.99141 1.21399 0.76738 0.88957 0.82714 1.90709 1.54233 1.68690 1.32903 1.45260 1.63876 1.14707 1.09695 1.21376 0.99384 0.83372 0.95009 0.87914 1.24249 0.94745 1.00576 1.00217 0.85558 1.21420 0.92218 0.83005 0.97110 1.46369 1.10419 1.17257 1.60784 1.19460 0.91997 0.99571 1.25710 0.90010 1.25718 0.95507 1.01927 1.02548 1.70088 0.99171 1.43585 1.46911 0.84984 0.77984 0.78229 0.77944 1.18858 1.21618 1.22052 1.21194 0.88788 0.92787 0.94753 1.24258 0.97425 0.93281 1.03832 0.84677 1.20433 0.95033 0.95234 1.07691 0.92088 0.88182 0.91987 0.90996 0.91161 0.83808 0.83383 0.84477 0.90537 0.91219 0.86485 0.86078 0.74371 0.92039 0.97837 0.94128 0.96664 0.91924 0.85541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 71.98 0.74 -0.34 16 2 C 0.05 0.46 5.46 71.98 0.39 0.85 16 3 O -0.34 -5.83 10.14 -92.41 -0.94 -6.77 16 4 C 0.12 2.02 6.69 22.51 0.15 2.17 16 5 C -0.22 -2.94 9.04 22.37 0.20 -2.73 16 6 C -0.08 -0.98 10.04 22.25 0.22 -0.76 16 7 C -0.16 -2.29 9.70 22.29 0.22 -2.07 16 8 C -0.04 -0.72 5.13 -19.88 -0.10 -0.82 16 9 C -0.06 -1.11 4.63 29.84 0.14 -0.97 16 10 C -0.12 -1.84 5.68 29.85 0.17 -1.67 16 11 C 0.51 12.74 7.83 87.66 0.69 13.42 16 12 O -0.59 -20.41 15.55 -3.02 -0.05 -20.46 16 13 N -0.69 -16.16 5.56 -442.54 -2.46 -18.62 16 14 C 0.12 3.79 5.97 44.99 0.27 4.06 16 15 H 0.10 4.05 7.40 -2.39 -0.02 4.03 16 16 C -0.18 -6.47 6.96 -9.94 -0.07 -6.54 16 17 H 0.13 4.01 8.14 -2.39 -0.02 3.99 16 18 C 0.19 9.30 5.92 85.82 0.51 9.80 16 19 N -0.62 -32.74 3.45 -678.55 -2.34 -35.08 16 20 C -0.24 -13.53 10.36 84.04 0.87 -12.66 16 21 H 0.08 4.43 7.84 -2.91 -0.02 4.41 16 22 C -0.06 -3.64 5.42 84.87 0.46 -3.18 16 23 N -0.95 -57.56 10.82 21.65 0.23 -57.33 16 24 Si 0.98 45.75 29.56 68.60 2.03 47.78 16 25 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 26 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 27 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 28 C 0.15 6.41 7.05 86.54 0.61 7.02 16 29 C -0.17 -5.67 7.05 -9.94 -0.07 -5.74 16 30 H 0.14 3.78 8.14 -2.38 -0.02 3.76 16 31 C -0.17 -3.00 9.64 22.36 0.22 -2.78 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.07 0.53 7.65 -2.39 -0.02 0.52 16 36 H 0.07 0.54 7.67 -2.39 -0.02 0.52 16 37 H 0.14 1.28 6.30 -2.91 -0.02 1.26 16 38 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 39 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 40 H 0.08 1.49 8.04 -2.39 -0.02 1.48 16 41 H 0.07 1.43 8.04 -2.38 -0.02 1.42 16 42 H 0.12 1.36 8.14 -2.39 -0.02 1.35 16 43 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.42 6.76 8.83 -92.71 -0.82 5.94 16 45 H 0.06 3.40 6.56 -2.39 -0.02 3.39 16 46 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 47 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 48 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 50 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -75.62 411.50 2.21 -73.42 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.12 Total: 20.00 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 5.61 Total: -2.93 kcal Atomic # 7 Polarization: -106.46 SS G_CDS: -4.57 Total: -111.03 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.98 Total: -27.23 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -75.62 2.21 -73.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115321837.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.583 kcal (2) G-P(sol) polarization free energy of solvation -75.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds