Wall clock time and date at job start Wed Apr 1 2020 03:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.47035 * 2 1 4 4 C 1.42904 * 113.99966 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47082 * 180.02562 * 4 3 2 6 6 N 1.46905 * 109.47226 * 65.00297 * 5 4 3 7 7 C 1.46896 * 111.00257 * 175.81690 * 6 5 4 8 8 C 1.53003 * 109.47347 * 54.69481 * 7 6 5 9 9 N 1.46503 * 109.46871 * 54.59690 * 8 7 6 10 10 C 1.34768 * 120.00041 * 177.89314 * 9 8 7 11 11 O 1.21279 * 120.00165 * 359.97438 * 10 9 8 12 12 C 1.50702 * 120.00003 * 180.27673 * 10 9 8 13 13 S 1.81007 * 109.47018 * 179.71908 * 12 10 9 14 14 C 1.76201 * 99.99636 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00405 * 0.02562 * 14 13 12 16 16 C 1.38804 * 119.99611 * 179.97438 * 14 13 12 17 17 N 1.31626 * 120.00309 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99901 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47074 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47451 * 120.00327 * 18 16 14 21 21 H 1.48496 * 109.47470 * 240.00595 * 18 16 14 22 22 C 1.52998 * 109.47343 * 174.70112 * 7 6 5 23 23 C 1.52996 * 109.47299 * 59.99641 * 22 7 6 24 24 C 1.52998 * 109.47280 * 60.00064 * 23 22 7 25 25 C 1.53003 * 109.46978 * 300.00503 * 24 23 22 26 26 C 1.52996 * 109.47526 * 59.99647 * 25 24 23 27 27 H 1.08996 * 109.47390 * 59.99902 * 1 2 3 28 28 H 1.08999 * 109.46872 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47190 * 299.99559 * 1 2 3 30 30 H 1.09001 * 109.47190 * 240.00441 * 2 1 3 31 31 H 1.08996 * 109.47390 * 120.00097 * 2 1 3 32 32 H 1.09001 * 109.46558 * 60.00501 * 4 3 2 33 33 H 1.08995 * 109.47166 * 300.00398 * 4 3 2 34 34 H 1.09002 * 109.47389 * 305.00419 * 5 4 3 35 35 H 1.09000 * 109.47349 * 184.99805 * 5 4 3 36 36 H 1.00906 * 110.99341 * 299.76707 * 6 5 4 37 37 H 1.08997 * 109.47196 * 294.59642 * 8 7 6 38 38 H 1.08998 * 109.47048 * 174.59490 * 8 7 6 39 39 H 0.97007 * 119.99651 * 357.88123 * 9 8 7 40 40 H 1.08999 * 109.46870 * 299.71372 * 12 10 9 41 41 H 1.08999 * 109.47601 * 59.71961 * 12 10 9 42 42 H 0.96999 * 120.00607 * 180.02562 * 17 16 14 43 43 H 1.08996 * 109.47523 * 180.02562 * 22 7 6 44 44 H 1.09005 * 109.46756 * 299.99906 * 22 7 6 45 45 H 1.09009 * 109.46980 * 300.00154 * 23 22 7 46 46 H 1.08997 * 109.47024 * 180.02562 * 23 22 7 47 47 H 1.08999 * 109.47223 * 179.97438 * 24 23 22 48 48 H 1.09001 * 109.47083 * 59.99806 * 24 23 22 49 49 H 1.09001 * 109.46810 * 299.99043 * 25 24 23 50 50 H 1.09001 * 109.46598 * 180.02562 * 25 24 23 51 51 H 1.08997 * 109.47024 * 179.97438 * 26 25 24 52 52 H 1.09003 * 109.46669 * 59.99765 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 0.0001 6 7 3.3867 3.5617 1.2560 7 6 3.8356 4.9581 1.3355 8 6 3.3601 5.7181 0.0957 9 7 1.9090 5.5700 -0.0412 10 6 1.2596 6.1932 -1.0443 11 8 1.8764 6.8771 -1.8334 12 6 -0.2339 6.0458 -1.1814 13 16 -0.8060 7.0012 -2.6084 14 6 -2.5327 6.6582 -2.5338 15 1 -2.9233 6.0201 -1.7550 16 6 -3.3909 7.2091 -3.4754 17 7 -2.9148 7.9872 -4.4243 18 14 -5.2215 6.8461 -3.3959 19 1 -5.4993 5.9518 -2.2434 20 1 -5.9713 8.1168 -3.2278 21 1 -5.6495 6.1815 -4.6530 22 6 3.2509 5.6111 2.5895 23 6 3.7264 4.8512 3.8293 24 6 5.2543 4.8925 3.8980 25 6 5.8390 4.2395 2.6439 26 6 5.3635 4.9995 1.4042 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.8332 0.9767 -0.8909 33 1 3.8340 0.9764 0.8891 34 1 3.3491 3.4419 -0.8411 35 1 4.9081 3.0255 -0.0899 36 1 2.3852 3.4972 1.3610 37 1 3.8516 5.3137 -0.7891 38 1 3.6093 6.7742 0.1991 39 1 1.4156 5.0231 0.5901 40 1 -0.4836 4.9945 -1.3243 41 1 -0.7200 6.4153 -0.2784 42 1 -3.5146 8.3725 -5.0821 43 1 3.5835 6.6474 2.6483 44 1 2.1623 5.5816 2.5406 45 1 3.3933 3.8149 3.7703 46 1 3.3095 5.3161 4.7226 47 1 5.5930 4.3515 4.7815 48 1 5.5874 5.9287 3.9570 49 1 5.5060 3.2033 2.5850 50 1 6.9275 4.2686 2.6932 51 1 5.7805 4.5346 0.5109 52 1 5.6966 6.0357 1.4633 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115413937.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:59 Heat of formation + Delta-G solvation = -104.991168 kcal Electronic energy + Delta-G solvation = -29199.786327 eV Core-core repulsion = 25324.568130 eV Total energy + Delta-G solvation = -3875.218198 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.44203 -38.65813 -38.15051 -35.36226 -33.79585 -32.41081 -31.81999 -31.03860 -30.53830 -29.15787 -27.55044 -25.70856 -25.25125 -23.26951 -22.95376 -22.06900 -21.05570 -20.24237 -19.20097 -17.89521 -16.94987 -16.50836 -16.41811 -16.10281 -15.94580 -15.39918 -15.21359 -14.78969 -14.65640 -14.30791 -14.29706 -13.94929 -13.79710 -13.50625 -13.27590 -13.06396 -12.80710 -12.66235 -12.45394 -12.38404 -12.21628 -12.10614 -11.96409 -11.65579 -11.55185 -11.37024 -11.21546 -11.12337 -11.05844 -10.99911 -10.75446 -10.72448 -10.39524 -10.16940 -9.78727 -9.77683 -9.37524 -9.06080 -8.85711 -8.58400 -8.20649 -6.47498 -6.20013 -3.90004 3.05170 3.13856 3.22599 3.29179 3.34016 3.49561 3.69466 3.95074 4.22100 4.40412 4.45966 4.60495 4.82303 4.85597 4.95882 5.00462 5.03129 5.09273 5.13022 5.15208 5.16254 5.19258 5.20132 5.27398 5.33775 5.38143 5.44102 5.53529 5.55940 5.60033 5.65557 5.70553 5.74258 5.79380 5.81726 5.88777 5.93038 5.99016 6.00248 6.05952 6.08245 6.08807 6.17985 6.33139 6.60300 6.81219 7.03108 7.18962 7.61781 7.70622 8.37441 8.64557 9.25471 10.87498 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010463 B = 0.002865 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.396091 B = 9770.209994 C =11393.638369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.387 6.387 4 C 0.066 3.934 5 C 0.052 3.948 6 N -0.665 5.665 7 C 0.107 3.893 8 C 0.093 3.907 9 N -0.735 5.735 10 C 0.533 3.467 11 O -0.518 6.518 12 C -0.152 4.152 13 S -0.061 6.061 14 C -0.533 4.533 15 H 0.073 0.927 16 C 0.073 3.927 17 N -0.868 5.868 18 Si 0.918 3.082 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.108 4.108 23 C -0.111 4.111 24 C -0.116 4.116 25 C -0.108 4.108 26 C -0.102 4.102 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.346 0.654 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.394 0.606 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.267 0.733 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.074 0.926 46 H 0.054 0.946 47 H 0.056 0.944 48 H 0.055 0.945 49 H 0.075 0.925 50 H 0.053 0.947 51 H 0.063 0.937 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.454 -14.597 16.845 27.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.015 4.015 3 O -0.306 6.306 4 C -0.011 4.011 5 C -0.077 4.077 6 N -0.298 5.298 7 C 0.016 3.984 8 C -0.033 4.033 9 N -0.391 5.391 10 C 0.320 3.680 11 O -0.393 6.393 12 C -0.303 4.303 13 S 0.166 5.834 14 C -0.682 4.682 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.146 4.146 23 C -0.148 4.148 24 C -0.153 4.153 25 C -0.146 4.146 26 C -0.141 4.141 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.166 0.834 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.229 0.771 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.094 0.906 50 H 0.071 0.929 51 H 0.082 0.918 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 17.857 -13.432 15.726 27.324 hybrid contribution -2.557 -1.069 0.489 2.814 sum 15.300 -14.501 16.215 26.595 Atomic orbital electron populations 1.21751 0.93637 1.02149 1.03515 1.22405 0.95685 0.83765 0.99653 1.87891 1.20979 1.26405 1.95369 1.22523 0.81607 0.96853 1.00100 1.22086 1.00718 0.92889 0.91987 1.60702 1.19264 1.14868 1.34946 1.21198 0.95998 0.87614 0.93614 1.21983 0.81449 1.01314 0.98583 1.45958 1.07799 1.53181 1.32127 1.20280 0.89428 0.78469 0.79870 1.90697 1.68642 1.38248 1.41672 1.23518 0.93710 1.06039 1.07012 1.85383 1.05953 1.61835 1.30244 1.22909 0.92266 1.35704 1.17289 0.90903 1.24993 0.99516 0.94578 0.94542 1.70027 1.35554 1.30198 1.14557 0.86120 0.83004 0.78236 0.78160 1.19600 1.20586 1.20586 1.21592 1.00190 0.99216 0.93560 1.21418 0.95472 1.01411 0.96545 1.21487 0.95836 1.00357 0.97661 1.21378 0.98781 1.00677 0.93723 1.21509 0.92886 1.00870 0.98796 0.91554 0.91305 0.91778 0.93721 0.93659 0.93264 0.92660 0.93327 0.89498 0.83434 0.91615 0.91280 0.77134 0.89247 0.89361 0.92271 0.91284 0.91888 0.90734 0.92722 0.92506 0.92635 0.90635 0.92874 0.91841 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.16 0.38 -0.95 16 2 C 0.06 0.54 6.66 37.16 0.25 0.79 16 3 O -0.39 -4.14 9.94 -35.23 -0.35 -4.49 16 4 C 0.07 0.58 6.28 37.16 0.23 0.81 16 5 C 0.05 0.47 5.23 -3.82 -0.02 0.45 16 6 N -0.67 -5.63 4.45 -99.96 -0.45 -6.08 16 7 C 0.11 0.93 0.30 -131.60 -0.04 0.89 16 8 C 0.09 1.11 3.85 -4.04 -0.02 1.10 16 9 N -0.74 -10.08 5.02 -60.29 -0.30 -10.38 16 10 C 0.53 10.22 7.85 -10.99 -0.09 10.13 16 11 O -0.52 -12.06 15.86 5.56 0.09 -11.97 16 12 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 13 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 14 C -0.53 -15.39 9.50 30.94 0.29 -15.09 16 15 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 16 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 17 N -0.87 -26.42 13.22 55.49 0.73 -25.69 16 18 Si 0.92 21.62 29.55 -169.99 -5.02 16.59 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.11 -0.91 4.67 -26.73 -0.12 -1.04 16 23 C -0.11 -0.84 5.77 -26.73 -0.15 -1.00 16 24 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 25 C -0.11 -0.77 5.77 -26.73 -0.15 -0.93 16 26 C -0.10 -0.80 4.50 -26.73 -0.12 -0.92 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.56 6.54 -51.93 -0.34 0.22 16 35 H 0.09 0.69 6.26 -51.93 -0.33 0.36 16 36 H 0.35 3.24 6.90 -39.29 -0.27 2.96 16 37 H 0.07 0.86 6.76 -51.93 -0.35 0.51 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.39 4.55 6.43 -40.82 -0.26 4.29 16 40 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 41 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 42 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.56 7.26 -51.93 -0.38 0.18 16 45 H 0.07 0.61 7.60 -51.92 -0.39 0.21 16 46 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 0.59 7.60 -51.93 -0.39 0.20 16 50 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.06 0.49 6.45 -51.93 -0.33 0.16 16 52 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 416.35 15.07 6.27 6.27 Total: -1.00 -33.65 416.35 -10.19 -43.84 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -9.36 Total: 3.46 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 0.41 Total: -7.67 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: -0.01 Total: -42.14 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.26 Total: -16.46 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.65 -10.19 -43.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115413937.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.151 kcal (2) G-P(sol) polarization free energy of solvation -33.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds