Wall clock time and date at job start Wed Apr 1 2020 03:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.47035 * 2 1 4 4 C 1.42904 * 113.99966 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47082 * 180.02562 * 4 3 2 6 6 N 1.46905 * 109.47226 * 65.00297 * 5 4 3 7 7 C 1.46896 * 111.00257 * 175.81690 * 6 5 4 8 8 C 1.53003 * 109.47347 * 54.69481 * 7 6 5 9 9 N 1.46503 * 109.46871 * 54.59690 * 8 7 6 10 10 C 1.34768 * 120.00041 * 177.89314 * 9 8 7 11 11 O 1.21279 * 120.00165 * 359.97438 * 10 9 8 12 12 C 1.50702 * 120.00003 * 180.27673 * 10 9 8 13 13 S 1.81007 * 109.47018 * 179.71908 * 12 10 9 14 14 C 1.76201 * 99.99636 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00405 * 0.02562 * 14 13 12 16 16 C 1.38804 * 119.99611 * 179.97438 * 14 13 12 17 17 N 1.31626 * 120.00309 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99901 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47074 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47451 * 120.00327 * 18 16 14 21 21 H 1.48496 * 109.47470 * 240.00595 * 18 16 14 22 22 C 1.52998 * 109.47343 * 174.70112 * 7 6 5 23 23 C 1.52996 * 109.47299 * 59.99641 * 22 7 6 24 24 C 1.52998 * 109.47280 * 60.00064 * 23 22 7 25 25 C 1.53003 * 109.46978 * 300.00503 * 24 23 22 26 26 C 1.52996 * 109.47526 * 59.99647 * 25 24 23 27 27 H 1.08996 * 109.47390 * 59.99902 * 1 2 3 28 28 H 1.08999 * 109.46872 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47190 * 299.99559 * 1 2 3 30 30 H 1.09001 * 109.47190 * 240.00441 * 2 1 3 31 31 H 1.08996 * 109.47390 * 120.00097 * 2 1 3 32 32 H 1.09001 * 109.46558 * 60.00501 * 4 3 2 33 33 H 1.08995 * 109.47166 * 300.00398 * 4 3 2 34 34 H 1.09002 * 109.47389 * 305.00419 * 5 4 3 35 35 H 1.09000 * 109.47349 * 184.99805 * 5 4 3 36 36 H 1.00906 * 110.99341 * 299.76707 * 6 5 4 37 37 H 1.08997 * 109.47196 * 294.59642 * 8 7 6 38 38 H 1.08998 * 109.47048 * 174.59490 * 8 7 6 39 39 H 0.97007 * 119.99651 * 357.88123 * 9 8 7 40 40 H 1.08999 * 109.46870 * 299.71372 * 12 10 9 41 41 H 1.08999 * 109.47601 * 59.71961 * 12 10 9 42 42 H 0.96999 * 120.00607 * 180.02562 * 17 16 14 43 43 H 1.08996 * 109.47523 * 180.02562 * 22 7 6 44 44 H 1.09005 * 109.46756 * 299.99906 * 22 7 6 45 45 H 1.09009 * 109.46980 * 300.00154 * 23 22 7 46 46 H 1.08997 * 109.47024 * 180.02562 * 23 22 7 47 47 H 1.08999 * 109.47223 * 179.97438 * 24 23 22 48 48 H 1.09001 * 109.47083 * 59.99806 * 24 23 22 49 49 H 1.09001 * 109.46810 * 299.99043 * 25 24 23 50 50 H 1.09001 * 109.46598 * 180.02562 * 25 24 23 51 51 H 1.08997 * 109.47024 * 179.97438 * 26 25 24 52 52 H 1.09003 * 109.46669 * 59.99765 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 0.0001 6 7 3.3867 3.5617 1.2560 7 6 3.8356 4.9581 1.3355 8 6 3.3601 5.7181 0.0957 9 7 1.9090 5.5700 -0.0412 10 6 1.2596 6.1932 -1.0443 11 8 1.8764 6.8771 -1.8334 12 6 -0.2339 6.0458 -1.1814 13 16 -0.8060 7.0012 -2.6084 14 6 -2.5327 6.6582 -2.5338 15 1 -2.9233 6.0201 -1.7550 16 6 -3.3909 7.2091 -3.4754 17 7 -2.9148 7.9872 -4.4243 18 14 -5.2215 6.8461 -3.3959 19 1 -5.4993 5.9518 -2.2434 20 1 -5.9713 8.1168 -3.2278 21 1 -5.6495 6.1815 -4.6530 22 6 3.2509 5.6111 2.5895 23 6 3.7264 4.8512 3.8293 24 6 5.2543 4.8925 3.8980 25 6 5.8390 4.2395 2.6439 26 6 5.3635 4.9995 1.4042 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.8332 0.9767 -0.8909 33 1 3.8340 0.9764 0.8891 34 1 3.3491 3.4419 -0.8411 35 1 4.9081 3.0255 -0.0899 36 1 2.3852 3.4972 1.3610 37 1 3.8516 5.3137 -0.7891 38 1 3.6093 6.7742 0.1991 39 1 1.4156 5.0231 0.5901 40 1 -0.4836 4.9945 -1.3243 41 1 -0.7200 6.4153 -0.2784 42 1 -3.5146 8.3725 -5.0821 43 1 3.5835 6.6474 2.6483 44 1 2.1623 5.5816 2.5406 45 1 3.3933 3.8149 3.7703 46 1 3.3095 5.3161 4.7226 47 1 5.5930 4.3515 4.7815 48 1 5.5874 5.9287 3.9570 49 1 5.5060 3.2033 2.5850 50 1 6.9275 4.2686 2.6932 51 1 5.7805 4.5346 0.5109 52 1 5.6966 6.0357 1.4633 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115413937.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:58 Heat of formation + Delta-G solvation = -127.514797 kcal Electronic energy + Delta-G solvation = -29200.763025 eV Core-core repulsion = 25324.568130 eV Total energy + Delta-G solvation = -3876.194896 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.40779 -39.99115 -38.88254 -36.24173 -34.89683 -34.59641 -32.66599 -31.72576 -31.46920 -30.48879 -28.30351 -27.71862 -26.46878 -23.96419 -23.63215 -22.78572 -21.93051 -21.53817 -19.99998 -19.79378 -18.02446 -17.64274 -17.36873 -17.10193 -16.90501 -16.89420 -16.53795 -16.08788 -15.89137 -15.56166 -15.16755 -14.96506 -14.73099 -14.54940 -14.48907 -14.33717 -13.95537 -13.65462 -13.41492 -13.21781 -13.17473 -13.04689 -12.93704 -12.91423 -12.70113 -12.64233 -12.59886 -12.23856 -12.08375 -11.89595 -11.79218 -11.73425 -11.33381 -11.17133 -11.14531 -10.92258 -10.82120 -10.48084 -10.30080 -10.17500 -9.37741 -8.68581 -8.36095 -6.14314 1.24880 1.40388 1.45160 1.56858 1.57013 2.21335 2.26377 2.82012 2.98053 3.12307 3.30427 3.63965 3.67663 3.92182 3.93888 4.13271 4.19663 4.22923 4.28676 4.31125 4.36176 4.40383 4.46131 4.47962 4.52224 4.53732 4.58462 4.63370 4.69228 4.70272 4.77715 4.80237 4.90074 4.97630 5.04463 5.06207 5.15516 5.19817 5.29592 5.31211 5.40707 5.42292 5.45072 5.46868 5.47650 5.73583 6.03299 6.18757 6.34565 6.37049 6.42345 7.05178 7.17364 8.73457 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010463 B = 0.002865 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.396091 B = 9770.209994 C =11393.638369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.411 6.411 4 C 0.067 3.933 5 C 0.056 3.944 6 N -0.653 5.653 7 C 0.120 3.880 8 C 0.093 3.907 9 N -0.708 5.708 10 C 0.536 3.464 11 O -0.565 6.565 12 C -0.128 4.128 13 S -0.148 6.148 14 C -0.545 4.545 15 H 0.081 0.919 16 C 0.013 3.987 17 N -0.911 5.911 18 Si 0.999 3.001 19 H -0.257 1.257 20 H -0.273 1.273 21 H -0.273 1.273 22 C -0.108 4.108 23 C -0.105 4.105 24 C -0.115 4.115 25 C -0.102 4.102 26 C -0.102 4.102 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.020 0.980 35 H 0.100 0.900 36 H 0.342 0.658 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.408 0.592 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.271 0.729 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.071 0.929 46 H 0.058 0.942 47 H 0.064 0.936 48 H 0.055 0.945 49 H 0.072 0.928 50 H 0.062 0.938 51 H 0.065 0.935 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.354 -16.478 19.129 30.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.331 6.331 4 C -0.009 4.009 5 C -0.073 4.073 6 N -0.285 5.285 7 C 0.028 3.972 8 C -0.032 4.032 9 N -0.362 5.362 10 C 0.322 3.678 11 O -0.443 6.443 12 C -0.279 4.279 13 S 0.079 5.921 14 C -0.693 4.693 15 H 0.100 0.900 16 C -0.192 4.192 17 N -0.548 5.548 18 Si 0.821 3.179 19 H -0.180 1.180 20 H -0.198 1.198 21 H -0.199 1.199 22 C -0.146 4.146 23 C -0.143 4.143 24 C -0.153 4.153 25 C -0.139 4.139 26 C -0.140 4.140 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.039 0.961 35 H 0.118 0.882 36 H 0.162 0.838 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.245 0.755 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.077 0.923 47 H 0.083 0.917 48 H 0.074 0.926 49 H 0.091 0.909 50 H 0.081 0.919 51 H 0.083 0.917 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 17.777 -15.352 18.063 29.631 hybrid contribution -2.417 -0.529 -0.157 2.480 sum 15.360 -15.882 17.905 28.439 Atomic orbital electron populations 1.21767 0.93843 1.03051 1.02320 1.22523 0.95569 0.83154 1.00614 1.87858 1.22011 1.27662 1.95553 1.22568 0.80913 0.96480 1.00970 1.22080 1.01251 0.93071 0.90916 1.60747 1.18934 1.14312 1.34498 1.21145 0.96806 0.87217 0.92041 1.22160 0.79744 1.01284 1.00045 1.45678 1.08707 1.51429 1.30389 1.20028 0.88784 0.78550 0.80488 1.90685 1.69204 1.40667 1.43756 1.23345 0.94969 1.05409 1.04204 1.85548 1.07232 1.64293 1.35011 1.23222 0.92324 1.35986 1.17790 0.90046 1.26136 1.05168 0.94021 0.93827 1.70185 1.37666 1.31390 1.15524 0.84898 0.75820 0.78440 0.78743 1.18042 1.19834 1.19866 1.21600 0.99948 0.99229 0.93802 1.21369 0.95916 1.00985 0.96014 1.21491 0.95326 1.00519 0.97950 1.21329 0.99336 1.00174 0.93097 1.21524 0.91759 1.01226 0.99519 0.93491 0.89434 0.92113 0.93275 0.92095 0.92694 0.91386 0.96145 0.88183 0.83833 0.92576 0.92291 0.75470 0.87760 0.87397 0.91965 0.91562 0.92245 0.90985 0.92278 0.91702 0.92619 0.90932 0.91943 0.91656 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 10.28 71.98 0.74 -1.74 16 2 C 0.06 0.92 6.66 71.98 0.48 1.40 16 3 O -0.41 -8.29 9.94 -148.98 -1.48 -9.77 16 4 C 0.07 1.06 6.28 71.98 0.45 1.52 16 5 C 0.06 0.94 5.23 86.30 0.45 1.39 16 6 N -0.65 -10.03 4.45 -470.17 -2.09 -12.12 16 7 C 0.12 1.93 0.30 3.53 0.00 1.93 16 8 C 0.09 2.21 3.85 86.38 0.33 2.54 16 9 N -0.71 -19.05 5.02 -463.06 -2.33 -21.37 16 10 C 0.54 20.69 7.85 87.66 0.69 21.38 16 11 O -0.56 -27.11 15.86 -3.03 -0.05 -27.16 16 12 C -0.13 -5.31 6.16 71.24 0.44 -4.87 16 13 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 14 C -0.55 -31.69 9.50 67.96 0.65 -31.05 16 15 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 16 C 0.01 0.76 5.49 84.86 0.47 1.23 16 17 N -0.91 -56.57 13.22 21.65 0.29 -56.29 16 18 Si 1.00 44.12 29.55 68.60 2.03 46.15 16 19 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 C -0.11 -1.65 4.67 30.59 0.14 -1.51 16 23 C -0.11 -1.37 5.77 30.59 0.18 -1.19 16 24 C -0.12 -1.36 5.92 30.59 0.18 -1.18 16 25 C -0.10 -1.21 5.77 30.59 0.18 -1.03 16 26 C -0.10 -1.43 4.50 30.59 0.14 -1.29 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.02 0.47 6.54 -2.39 -0.02 0.45 16 35 H 0.10 1.42 6.26 -2.39 -0.01 1.40 16 36 H 0.34 5.83 6.90 -89.69 -0.62 5.21 16 37 H 0.06 1.48 6.76 -2.39 -0.02 1.46 16 38 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.41 8.88 6.43 -92.70 -0.60 8.29 16 40 H 0.10 4.01 8.14 -2.40 -0.02 3.99 16 41 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 42 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 43 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.06 0.95 7.26 -2.38 -0.02 0.94 16 45 H 0.07 1.00 7.60 -2.38 -0.02 0.98 16 46 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.07 0.94 7.60 -2.39 -0.02 0.92 16 50 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.06 0.91 6.45 -2.39 -0.02 0.89 16 52 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -74.80 416.35 0.40 -74.40 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: -0.31 Total: 28.21 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: 5.51 Total: -12.48 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -4.13 Total: -89.79 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -1.53 Total: -36.93 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -74.80 0.40 -74.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115413937.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.115 kcal (2) G-P(sol) polarization free energy of solvation -74.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds