Wall clock time and date at job start Wed Apr 1 2020 03:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42895 * 109.47466 * 2 1 4 4 C 1.42900 * 114.00388 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46942 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47046 * 179.97438 * 5 4 3 7 7 N 1.46895 * 109.47066 * 179.97438 * 6 5 4 8 8 C 1.46843 * 111.00221 * 70.27170 * 7 6 5 9 9 C 1.53176 * 109.55878 * 185.83703 * 8 7 6 10 10 H 1.08993 * 109.48807 * 60.75104 * 9 8 7 11 11 N 1.46498 * 109.58543 * 180.91121 * 9 8 7 12 12 C 1.34781 * 119.99728 * 204.77062 * 11 9 8 13 13 O 1.21280 * 120.00284 * 359.97438 * 12 11 9 14 14 C 1.50699 * 119.99848 * 180.02562 * 12 11 9 15 15 S 1.81004 * 109.46964 * 180.02562 * 14 12 11 16 16 C 1.76202 * 99.99968 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99931 * 0.02562 * 16 15 14 18 18 C 1.38793 * 119.99828 * 179.97438 * 16 15 14 19 19 N 1.31632 * 120.00548 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99870 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47394 * 60.00324 * 20 18 16 22 22 H 1.48503 * 109.46994 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47034 * 299.99974 * 20 18 16 24 24 C 1.53122 * 109.20747 * 300.85952 * 9 8 7 25 25 C 1.53117 * 109.20940 * 57.62512 * 24 9 8 26 26 C 1.46856 * 111.00099 * 194.48393 * 7 6 5 27 27 H 1.09002 * 109.44630 * 294.17287 * 26 7 6 28 28 C 1.52999 * 109.46361 * 54.14025 * 26 7 6 29 29 H 1.09000 * 109.47346 * 59.99994 * 1 2 3 30 30 H 1.09005 * 109.47149 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46991 * 299.99839 * 1 2 3 32 32 H 1.09000 * 109.47365 * 239.99785 * 2 1 3 33 33 H 1.09000 * 109.47346 * 120.00006 * 2 1 3 34 34 H 1.08995 * 109.46790 * 60.00548 * 4 3 2 35 35 H 1.08995 * 109.47193 * 299.99641 * 4 3 2 36 36 H 1.08998 * 109.47633 * 60.00159 * 5 4 3 37 37 H 1.09006 * 109.47253 * 299.99909 * 5 4 3 38 38 H 1.09008 * 109.46595 * 60.00160 * 6 5 4 39 39 H 1.08997 * 109.46928 * 300.00075 * 6 5 4 40 40 H 1.09004 * 109.46308 * 305.85643 * 8 7 6 41 41 H 1.09007 * 109.46138 * 65.82272 * 8 7 6 42 42 H 0.96994 * 120.00665 * 24.77122 * 11 9 8 43 43 H 1.09002 * 109.47082 * 299.99003 * 14 12 11 44 44 H 1.08998 * 109.47986 * 59.99673 * 14 12 11 45 45 H 0.97001 * 120.00600 * 179.97438 * 19 18 16 46 46 H 1.09000 * 109.52465 * 297.69026 * 24 9 8 47 47 H 1.09003 * 109.52097 * 177.55858 * 24 9 8 48 48 H 1.09000 * 109.50306 * 62.25601 * 25 24 9 49 49 H 1.09008 * 109.49924 * 182.33204 * 25 24 9 50 50 H 1.08990 * 109.47176 * 172.75929 * 28 26 7 51 51 H 1.08998 * 109.47183 * 292.76292 * 28 26 7 52 52 H 1.09007 * 109.46845 * 52.76106 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8253 2.9383 0.0012 6 6 5.3506 3.0592 0.0024 7 7 5.7293 4.4785 0.0024 8 6 5.4168 5.1066 1.2924 9 6 5.6881 6.6118 1.2089 10 1 5.0539 7.0535 0.4402 11 7 5.3971 7.2357 2.5020 12 6 5.0751 8.5431 2.5622 13 8 5.0266 9.2032 1.5459 14 6 4.7764 9.1851 3.8925 15 16 4.3805 10.9336 3.6432 16 6 4.0822 11.4204 5.3102 17 1 4.1710 10.6978 6.1079 18 6 3.7342 12.7328 5.5982 19 7 3.6265 13.6137 4.6260 20 14 3.4173 13.2487 7.3653 21 1 4.6395 13.0157 8.1759 22 1 3.0644 14.6907 7.4043 23 1 2.2952 12.4499 7.9205 24 6 7.1593 6.8395 0.8509 25 6 7.4707 6.1346 -0.4723 26 6 7.1479 4.6447 -0.3393 27 1 7.7641 4.2082 0.4467 28 6 7.4387 3.9396 -1.6657 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8340 0.9765 -0.8892 35 1 3.8333 0.9767 0.8908 36 1 3.4223 3.4217 0.8911 37 1 3.4229 3.4222 -0.8889 38 1 5.7541 2.5758 -0.8874 39 1 5.7526 2.5755 0.8926 40 1 4.3667 4.9399 1.5326 41 1 6.0413 4.6680 2.0707 42 1 5.4363 6.7081 3.3149 43 1 3.9268 8.6831 4.3555 44 1 5.6476 9.0984 4.5417 45 1 3.3829 14.5308 4.8272 46 1 7.7931 6.4322 1.6386 47 1 7.3479 7.9081 0.7475 48 1 6.8646 6.5688 -1.2674 49 1 8.5271 6.2587 -0.7108 50 1 8.4554 4.1695 -1.9840 51 1 7.3335 2.8625 -1.5353 52 1 6.7342 4.2845 -2.4226 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131828898.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:33 Heat of formation + Delta-G solvation = -97.701021 kcal Electronic energy + Delta-G solvation = -27706.239653 eV Core-core repulsion = 23831.337580 eV Total energy + Delta-G solvation = -3874.902073 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.16166 -38.80400 -38.32747 -35.31446 -34.15218 -32.40748 -32.20462 -31.60963 -30.52794 -29.03856 -26.79511 -25.64736 -25.37093 -23.61561 -23.18162 -21.74626 -21.27160 -20.24481 -19.90724 -17.85422 -17.18084 -16.82705 -16.50813 -16.29888 -15.54962 -15.44167 -15.01001 -14.93157 -14.78524 -14.55912 -14.37170 -14.11196 -13.98797 -13.60259 -13.19922 -13.11262 -12.92522 -12.78525 -12.56352 -12.43647 -12.22964 -12.08399 -11.95130 -11.87652 -11.75614 -11.34587 -11.30710 -11.14289 -11.02490 -11.02249 -10.98194 -10.75999 -10.67866 -10.46398 -9.97529 -9.79999 -9.33780 -9.04232 -8.84324 -8.62595 -8.21178 -6.47276 -6.19298 -3.89738 2.94177 3.13296 3.16277 3.24952 3.28863 3.31994 3.58732 3.91778 4.22637 4.47463 4.51376 4.60132 4.62824 4.66768 4.75526 4.78378 4.91334 4.93662 4.95433 5.01303 5.05420 5.10371 5.14945 5.15606 5.19704 5.23588 5.30794 5.37243 5.42698 5.49296 5.51268 5.53330 5.59762 5.69043 5.72493 5.77008 5.82776 5.87291 5.92142 5.94336 5.98492 6.16575 6.18290 6.27310 6.61236 6.77269 6.85997 6.86362 7.61267 7.75689 8.37115 8.66615 9.25734 10.88016 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010721 B = 0.001999 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.037985 B =14001.966344 C =16130.425915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.388 6.388 4 C 0.065 3.935 5 C -0.117 4.117 6 C 0.055 3.945 7 N -0.528 5.528 8 C 0.050 3.950 9 C 0.151 3.849 10 H 0.097 0.903 11 N -0.736 5.736 12 C 0.534 3.466 13 O -0.515 6.515 14 C -0.154 4.154 15 S -0.059 6.059 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.133 4.133 25 C -0.108 4.108 26 C 0.081 3.919 27 H 0.040 0.960 28 C -0.149 4.149 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.034 0.966 40 H 0.084 0.916 41 H 0.037 0.963 42 H 0.396 0.604 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.269 0.731 46 H 0.058 0.942 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.070 0.930 50 H 0.061 0.939 51 H 0.054 0.946 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.560 -29.958 -10.139 31.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.308 6.308 4 C -0.012 4.012 5 C -0.155 4.155 6 C -0.072 4.072 7 N -0.253 5.253 8 C -0.079 4.079 9 C 0.046 3.954 10 H 0.115 0.885 11 N -0.389 5.389 12 C 0.320 3.680 13 O -0.389 6.389 14 C -0.304 4.304 15 S 0.168 5.832 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.172 4.172 25 C -0.147 4.147 26 C -0.027 4.027 27 H 0.058 0.942 28 C -0.206 4.206 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.052 0.948 40 H 0.102 0.898 41 H 0.055 0.945 42 H 0.229 0.771 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.093 0.907 48 H 0.094 0.906 49 H 0.088 0.912 50 H 0.080 0.920 51 H 0.073 0.927 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.037 -28.252 -12.259 31.060 hybrid contribution 0.553 -1.393 3.457 3.767 sum 4.590 -29.644 -8.803 31.262 Atomic orbital electron populations 1.21752 0.93648 1.02230 1.03362 1.22451 0.95740 0.83807 0.99902 1.87909 1.21096 1.26378 1.95396 1.22416 0.81334 0.97552 0.99889 1.21503 0.95020 0.94519 1.04419 1.22059 0.95206 0.88639 1.01334 1.61757 1.19197 1.13765 1.30557 1.22351 1.01738 0.93940 0.89850 1.20822 0.96380 0.91496 0.86729 0.88509 1.46001 1.73055 1.10730 1.09154 1.20276 0.75422 0.81086 0.91173 1.90702 1.49900 1.61955 1.36302 1.23537 1.04515 1.05657 0.96722 1.85398 1.89782 0.96144 1.11921 1.22831 1.54695 0.98178 0.92735 0.91010 1.24987 0.94766 0.95429 0.98401 1.70008 1.44750 1.03758 1.31761 0.86230 0.78817 0.77604 0.82877 1.19972 1.20816 1.19947 1.22007 0.96185 1.01925 0.97063 1.21588 1.01379 0.93467 0.98243 1.21666 0.87483 0.96647 0.96918 0.94170 1.21940 1.01982 0.99671 0.97033 0.91747 0.91132 0.91725 0.93508 0.93530 0.93397 0.93609 0.90953 0.89997 0.89816 0.94755 0.89753 0.94523 0.77093 0.89259 0.89308 0.92140 0.92285 0.90653 0.90579 0.91187 0.91958 0.92717 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.54 16 2 C 0.06 0.39 6.66 37.16 0.25 0.64 16 3 O -0.39 -3.69 10.34 -35.23 -0.36 -4.06 16 4 C 0.07 0.48 5.94 37.16 0.22 0.70 16 5 C -0.12 -0.94 5.61 -26.73 -0.15 -1.09 16 6 C 0.06 0.40 4.75 -3.82 -0.02 0.38 16 7 N -0.53 -4.72 4.46 -226.60 -1.01 -5.73 16 8 C 0.05 0.48 4.78 -3.76 -0.02 0.46 16 9 C 0.15 1.88 2.62 -67.78 -0.18 1.70 16 10 H 0.10 1.48 7.58 -51.93 -0.39 1.08 16 11 N -0.74 -10.00 5.08 -53.66 -0.27 -10.27 16 12 C 0.53 10.06 7.81 -10.98 -0.09 9.97 16 13 O -0.51 -11.79 15.53 5.56 0.09 -11.70 16 14 C -0.15 -3.13 6.16 36.00 0.22 -2.90 16 15 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 16 C -0.54 -15.39 9.50 30.94 0.29 -15.10 16 17 H 0.07 1.94 7.80 -52.49 -0.41 1.54 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -26.35 13.22 55.49 0.73 -25.61 16 20 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 24 C -0.13 -1.55 5.57 -26.61 -0.15 -1.69 16 25 C -0.11 -1.03 5.37 -26.66 -0.14 -1.17 16 26 C 0.08 0.67 2.44 -67.72 -0.17 0.50 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 28 C -0.15 -0.99 8.56 37.16 0.32 -0.67 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.66 6.59 -51.93 -0.34 0.31 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.53 5.61 -51.92 -0.29 0.23 16 39 H 0.03 0.24 8.08 -51.93 -0.42 -0.18 16 40 H 0.08 0.83 6.42 -51.93 -0.33 0.50 16 41 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.40 4.21 8.61 -40.82 -0.35 3.86 16 43 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 44 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 45 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 50 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 51 H 0.05 0.31 6.46 -51.93 -0.34 -0.03 16 52 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 423.64 15.07 6.38 6.38 Total: -1.00 -34.39 423.64 -10.62 -45.00 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -9.62 Total: 0.08 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 0.68 Total: -6.80 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: -0.55 Total: -41.62 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.28 Total: -15.76 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -34.39 -10.62 -45.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131828898.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.696 kcal (2) G-P(sol) polarization free energy of solvation -34.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds