Wall clock time and date at job start Wed Apr 1 2020 03:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42895 * 109.47466 * 2 1 4 4 C 1.42900 * 114.00388 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46942 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47046 * 179.97438 * 5 4 3 7 7 N 1.46895 * 109.47066 * 179.97438 * 6 5 4 8 8 C 1.46843 * 111.00221 * 70.27170 * 7 6 5 9 9 C 1.53176 * 109.55878 * 185.83703 * 8 7 6 10 10 H 1.08993 * 109.48807 * 60.75104 * 9 8 7 11 11 N 1.46498 * 109.58543 * 180.91121 * 9 8 7 12 12 C 1.34781 * 119.99728 * 204.77062 * 11 9 8 13 13 O 1.21280 * 120.00284 * 359.97438 * 12 11 9 14 14 C 1.50699 * 119.99848 * 180.02562 * 12 11 9 15 15 S 1.81004 * 109.46964 * 180.02562 * 14 12 11 16 16 C 1.76202 * 99.99968 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99931 * 0.02562 * 16 15 14 18 18 C 1.38793 * 119.99828 * 179.97438 * 16 15 14 19 19 N 1.31632 * 120.00548 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99870 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47394 * 60.00324 * 20 18 16 22 22 H 1.48503 * 109.46994 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47034 * 299.99974 * 20 18 16 24 24 C 1.53122 * 109.20747 * 300.85952 * 9 8 7 25 25 C 1.53117 * 109.20940 * 57.62512 * 24 9 8 26 26 C 1.46856 * 111.00099 * 194.48393 * 7 6 5 27 27 H 1.09002 * 109.44630 * 294.17287 * 26 7 6 28 28 C 1.52999 * 109.46361 * 54.14025 * 26 7 6 29 29 H 1.09000 * 109.47346 * 59.99994 * 1 2 3 30 30 H 1.09005 * 109.47149 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46991 * 299.99839 * 1 2 3 32 32 H 1.09000 * 109.47365 * 239.99785 * 2 1 3 33 33 H 1.09000 * 109.47346 * 120.00006 * 2 1 3 34 34 H 1.08995 * 109.46790 * 60.00548 * 4 3 2 35 35 H 1.08995 * 109.47193 * 299.99641 * 4 3 2 36 36 H 1.08998 * 109.47633 * 60.00159 * 5 4 3 37 37 H 1.09006 * 109.47253 * 299.99909 * 5 4 3 38 38 H 1.09008 * 109.46595 * 60.00160 * 6 5 4 39 39 H 1.08997 * 109.46928 * 300.00075 * 6 5 4 40 40 H 1.09004 * 109.46308 * 305.85643 * 8 7 6 41 41 H 1.09007 * 109.46138 * 65.82272 * 8 7 6 42 42 H 0.96994 * 120.00665 * 24.77122 * 11 9 8 43 43 H 1.09002 * 109.47082 * 299.99003 * 14 12 11 44 44 H 1.08998 * 109.47986 * 59.99673 * 14 12 11 45 45 H 0.97001 * 120.00600 * 179.97438 * 19 18 16 46 46 H 1.09000 * 109.52465 * 297.69026 * 24 9 8 47 47 H 1.09003 * 109.52097 * 177.55858 * 24 9 8 48 48 H 1.09000 * 109.50306 * 62.25601 * 25 24 9 49 49 H 1.09008 * 109.49924 * 182.33204 * 25 24 9 50 50 H 1.08990 * 109.47176 * 172.75929 * 28 26 7 51 51 H 1.08998 * 109.47183 * 292.76292 * 28 26 7 52 52 H 1.09007 * 109.46845 * 52.76106 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8253 2.9383 0.0012 6 6 5.3506 3.0592 0.0024 7 7 5.7293 4.4785 0.0024 8 6 5.4168 5.1066 1.2924 9 6 5.6881 6.6118 1.2089 10 1 5.0539 7.0535 0.4402 11 7 5.3971 7.2357 2.5020 12 6 5.0751 8.5431 2.5622 13 8 5.0266 9.2032 1.5459 14 6 4.7764 9.1851 3.8925 15 16 4.3805 10.9336 3.6432 16 6 4.0822 11.4204 5.3102 17 1 4.1710 10.6978 6.1079 18 6 3.7342 12.7328 5.5982 19 7 3.6265 13.6137 4.6260 20 14 3.4173 13.2487 7.3653 21 1 4.6395 13.0157 8.1759 22 1 3.0644 14.6907 7.4043 23 1 2.2952 12.4499 7.9205 24 6 7.1593 6.8395 0.8509 25 6 7.4707 6.1346 -0.4723 26 6 7.1479 4.6447 -0.3393 27 1 7.7641 4.2082 0.4467 28 6 7.4387 3.9396 -1.6657 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8340 0.9765 -0.8892 35 1 3.8333 0.9767 0.8908 36 1 3.4223 3.4217 0.8911 37 1 3.4229 3.4222 -0.8889 38 1 5.7541 2.5758 -0.8874 39 1 5.7526 2.5755 0.8926 40 1 4.3667 4.9399 1.5326 41 1 6.0413 4.6680 2.0707 42 1 5.4363 6.7081 3.3149 43 1 3.9268 8.6831 4.3555 44 1 5.6476 9.0984 4.5417 45 1 3.3829 14.5308 4.8272 46 1 7.7931 6.4322 1.6386 47 1 7.3479 7.9081 0.7475 48 1 6.8646 6.5688 -1.2674 49 1 8.5271 6.2587 -0.7108 50 1 8.4554 4.1695 -1.9840 51 1 7.3335 2.8625 -1.5353 52 1 6.7342 4.2845 -2.4226 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131828898.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:32 Heat of formation + Delta-G solvation = -121.695236 kcal Electronic energy + Delta-G solvation = -27707.280120 eV Core-core repulsion = 23831.337580 eV Total energy + Delta-G solvation = -3875.942541 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.19545 -39.94964 -38.98883 -36.36613 -34.99510 -34.58310 -32.84123 -32.69245 -31.14608 -30.44731 -27.79436 -27.47669 -26.27568 -24.36008 -23.68133 -22.68151 -22.02730 -21.45737 -20.79617 -19.80701 -17.99064 -17.86089 -17.42149 -17.25301 -16.87884 -16.52535 -16.39408 -16.20012 -15.79300 -15.63136 -15.38094 -15.01691 -14.86316 -14.70357 -14.62515 -14.28163 -13.87776 -13.58513 -13.52928 -13.34050 -13.17296 -13.14525 -12.86752 -12.81410 -12.65309 -12.62571 -12.46491 -12.39337 -12.00729 -11.96787 -11.91989 -11.79540 -11.73311 -11.43614 -11.29784 -11.12847 -10.88443 -10.53093 -10.27893 -10.10430 -9.28615 -8.66840 -8.34252 -6.12700 1.26028 1.43918 1.46167 1.55980 1.61200 2.15665 2.27815 2.60515 2.99542 3.10007 3.33023 3.65746 3.78549 3.88749 3.93634 4.00587 4.08109 4.17184 4.18257 4.27698 4.30141 4.31107 4.40510 4.44193 4.46168 4.48665 4.49793 4.51751 4.57035 4.62076 4.70067 4.80288 4.83673 4.87998 4.94031 5.01639 5.03454 5.07503 5.18271 5.21059 5.23161 5.27281 5.34535 5.41309 5.41727 5.49933 6.08583 6.16640 6.19669 6.32663 6.50902 7.06587 7.25385 8.74694 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010721 B = 0.001999 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.037985 B =14001.966344 C =16130.425915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.419 6.419 4 C 0.065 3.935 5 C -0.112 4.112 6 C 0.062 3.938 7 N -0.543 5.543 8 C 0.060 3.940 9 C 0.151 3.849 10 H 0.062 0.938 11 N -0.710 5.710 12 C 0.536 3.464 13 O -0.564 6.564 14 C -0.129 4.129 15 S -0.152 6.152 16 C -0.547 4.547 17 H 0.083 0.917 18 C 0.012 3.988 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.261 1.261 22 H -0.279 1.279 23 H -0.262 1.262 24 C -0.128 4.128 25 C -0.105 4.105 26 C 0.083 3.917 27 H 0.052 0.948 28 C -0.145 4.145 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.098 0.902 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.057 0.943 42 H 0.415 0.585 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.271 0.729 46 H 0.075 0.925 47 H 0.041 0.959 48 H 0.058 0.942 49 H 0.085 0.915 50 H 0.071 0.929 51 H 0.070 0.930 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.599 -33.209 -8.510 34.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.339 6.339 4 C -0.012 4.012 5 C -0.150 4.150 6 C -0.066 4.066 7 N -0.269 5.269 8 C -0.068 4.068 9 C 0.046 3.954 10 H 0.080 0.920 11 N -0.363 5.363 12 C 0.322 3.678 13 O -0.442 6.442 14 C -0.280 4.280 15 S 0.076 5.924 16 C -0.695 4.695 17 H 0.101 0.899 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.821 3.179 21 H -0.186 1.186 22 H -0.204 1.204 23 H -0.187 1.187 24 C -0.167 4.167 25 C -0.143 4.143 26 C -0.024 4.024 27 H 0.070 0.930 28 C -0.202 4.202 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.116 0.884 39 H 0.066 0.934 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.252 0.748 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.080 0.920 46 H 0.094 0.906 47 H 0.060 0.940 48 H 0.077 0.923 49 H 0.104 0.896 50 H 0.090 0.910 51 H 0.089 0.911 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.092 -31.576 -10.619 33.700 hybrid contribution 0.246 -0.492 2.869 2.922 sum 5.337 -32.068 -7.749 33.420 Atomic orbital electron populations 1.21787 0.93493 1.03302 1.02455 1.22627 0.95996 0.82900 1.00958 1.87875 1.22332 1.28086 1.95622 1.22474 0.80596 0.96951 1.01130 1.21443 0.95737 0.95052 1.02797 1.22054 0.94378 0.87510 1.02629 1.61709 1.19965 1.15078 1.30127 1.22194 1.02068 0.91523 0.91059 1.20885 0.96396 0.93240 0.84855 0.91959 1.45726 1.70835 1.08952 1.10802 1.20054 0.75416 0.82449 0.89851 1.90694 1.52432 1.63501 1.37534 1.23372 1.06088 1.00405 0.98148 1.85601 1.90435 1.02947 1.13460 1.23175 1.54699 0.98901 0.92727 0.89873 1.26146 0.94144 0.95346 1.03599 1.70181 1.45839 1.04210 1.34533 0.84996 0.79290 0.77253 0.76404 1.18598 1.20396 1.18659 1.21941 0.95624 1.00213 0.98935 1.21578 1.02011 0.94472 0.96288 1.21671 0.87092 0.95450 0.98208 0.93030 1.21912 1.02270 1.00364 0.95670 0.92568 0.89094 0.92690 0.92326 0.92487 0.92009 0.92350 0.92329 0.91881 0.88404 0.93384 0.90007 0.92497 0.74805 0.87237 0.87154 0.91995 0.90623 0.94019 0.92332 0.89643 0.90962 0.91149 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.28 71.98 0.74 -0.97 16 2 C 0.05 0.62 6.66 71.98 0.48 1.10 16 3 O -0.42 -7.59 10.34 -148.98 -1.54 -9.14 16 4 C 0.07 0.84 5.94 71.98 0.43 1.27 16 5 C -0.11 -1.68 5.61 30.60 0.17 -1.51 16 6 C 0.06 0.73 4.75 86.31 0.41 1.14 16 7 N -0.54 -8.78 4.46 -870.81 -3.88 -12.66 16 8 C 0.06 1.06 4.78 86.37 0.41 1.47 16 9 C 0.15 3.72 2.62 45.09 0.12 3.84 16 10 H 0.06 2.01 7.58 -2.39 -0.02 1.99 16 11 N -0.71 -18.68 5.08 -442.07 -2.25 -20.93 16 12 C 0.54 20.40 7.81 87.66 0.68 21.09 16 13 O -0.56 -27.06 15.53 -3.03 -0.05 -27.10 16 14 C -0.13 -5.20 6.16 71.24 0.44 -4.76 16 15 S -0.15 -8.56 20.57 -56.49 -1.16 -9.73 16 16 C -0.55 -31.60 9.50 67.95 0.65 -30.95 16 17 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 18 C 0.01 0.71 5.49 84.86 0.47 1.18 16 19 N -0.91 -56.65 13.22 21.65 0.29 -56.36 16 20 Si 1.00 43.95 29.55 68.60 2.03 45.98 16 21 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 24 C -0.13 -2.93 5.57 30.67 0.17 -2.76 16 25 C -0.11 -1.91 5.37 30.64 0.16 -1.75 16 26 C 0.08 1.18 2.44 44.93 0.11 1.29 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 C -0.14 -1.55 8.56 71.98 0.62 -0.94 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 30 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.06 1.02 6.59 -2.39 -0.02 1.01 16 37 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.10 0.92 5.61 -2.38 -0.01 0.90 16 39 H 0.05 0.48 8.08 -2.39 -0.02 0.46 16 40 H 0.08 1.51 6.42 -2.39 -0.02 1.49 16 41 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 42 H 0.42 7.82 8.61 -92.71 -0.80 7.02 16 43 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 44 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 45 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 46 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 50 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 51 H 0.07 0.55 6.46 -2.39 -0.02 0.53 16 52 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 Total: -1.00 -78.46 423.64 -0.43 -78.88 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.08 Total: 22.31 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: 6.06 Total: -11.26 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -5.84 Total: -89.95 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -1.59 Total: -36.24 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.73 kcal Total: -78.46 -0.43 -78.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131828898.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.811 kcal (2) G-P(sol) polarization free energy of solvation -78.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds