Wall clock time and date at job start Wed Apr 1 2020 03:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42909 * 109.46945 * 2 1 4 4 C 1.42902 * 113.99838 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46830 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46926 * 179.97438 * 5 4 3 7 7 N 1.46899 * 109.47036 * 179.97438 * 6 5 4 8 8 C 1.46847 * 110.99862 * 66.05037 * 7 6 5 9 9 C 1.53044 * 109.51335 * 174.15436 * 8 7 6 10 10 H 1.08999 * 109.49722 * 179.16244 * 9 8 7 11 11 N 1.46499 * 109.50328 * 299.24099 * 9 8 7 12 12 C 1.34772 * 120.00081 * 205.00133 * 11 9 8 13 13 O 1.21289 * 119.99777 * 0.02562 * 12 11 9 14 14 C 1.50696 * 120.00066 * 179.97438 * 12 11 9 15 15 S 1.81006 * 109.47260 * 179.97438 * 14 12 11 16 16 C 1.76196 * 100.00194 * 180.02562 * 15 14 12 17 17 H 1.08007 * 119.99665 * 359.97438 * 16 15 14 18 18 C 1.38793 * 120.00189 * 180.02562 * 16 15 14 19 19 N 1.31629 * 119.99855 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00384 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47182 * 89.99789 * 20 18 16 22 22 H 1.48497 * 109.47481 * 209.99914 * 20 18 16 23 23 H 1.48504 * 109.47161 * 329.99866 * 20 18 16 24 24 C 1.53119 * 109.27589 * 59.18419 * 9 8 7 25 25 C 1.53120 * 109.16202 * 302.34077 * 24 9 8 26 26 C 1.46847 * 110.99299 * 301.84195 * 7 6 5 27 27 H 1.08999 * 109.45820 * 65.84451 * 26 7 6 28 28 C 1.52999 * 109.46669 * 305.86103 * 26 7 6 29 29 H 1.08996 * 109.46818 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46893 * 300.00230 * 1 2 3 31 31 H 1.08995 * 109.46921 * 60.00111 * 1 2 3 32 32 H 1.08996 * 109.47068 * 240.00026 * 2 1 3 33 33 H 1.08996 * 109.46932 * 119.99332 * 2 1 3 34 34 H 1.08999 * 109.46854 * 59.99821 * 4 3 2 35 35 H 1.08996 * 109.46818 * 300.00214 * 4 3 2 36 36 H 1.08999 * 109.47343 * 60.00372 * 5 4 3 37 37 H 1.08997 * 109.47101 * 300.00131 * 5 4 3 38 38 H 1.09004 * 109.47161 * 60.00228 * 6 5 4 39 39 H 1.08996 * 109.47358 * 300.00580 * 6 5 4 40 40 H 1.09002 * 109.46448 * 54.14158 * 8 7 6 41 41 H 1.08994 * 109.45958 * 294.16523 * 8 7 6 42 42 H 0.97000 * 119.99929 * 24.99663 * 11 9 8 43 43 H 1.09002 * 109.47335 * 300.00300 * 14 12 11 44 44 H 1.09003 * 109.47258 * 60.00411 * 14 12 11 45 45 H 0.97004 * 120.00369 * 179.97438 * 19 18 16 46 46 H 1.08993 * 109.52284 * 62.25342 * 24 9 8 47 47 H 1.09003 * 109.51872 * 182.43790 * 24 9 8 48 48 H 1.08996 * 109.50328 * 177.59853 * 25 24 9 49 49 H 1.08996 * 109.50004 * 297.72216 * 25 24 9 50 50 H 1.08998 * 109.46934 * 299.96015 * 28 26 7 51 51 H 1.08998 * 109.46580 * 59.95213 * 28 26 7 52 52 H 1.08999 * 109.47163 * 179.97438 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8254 2.9385 -0.0001 6 6 5.3506 3.0593 0.0012 7 7 5.7293 4.4786 -0.0001 8 6 5.3261 5.1320 1.2517 9 6 5.8630 6.5650 1.2763 10 1 5.5510 7.0545 2.1989 11 7 7.3261 6.5404 1.2062 12 6 8.0419 7.5689 1.7024 13 8 7.4747 8.5146 2.2074 14 6 9.5469 7.5434 1.6307 15 16 10.2121 9.0540 2.3737 16 6 11.9371 8.7665 2.1593 17 1 12.2783 7.8586 1.6840 18 6 12.8576 9.7062 2.6021 19 7 12.4418 10.8124 3.1818 20 14 14.6864 9.4018 2.3742 21 1 15.1215 9.9570 1.0674 22 1 15.4390 10.0653 3.4690 23 1 14.9528 7.9412 2.4049 24 6 5.3063 7.3341 0.0750 25 6 5.6992 6.6062 -1.2136 26 6 5.1672 5.1721 -1.1661 27 1 4.0801 5.1905 -1.0884 28 6 5.5746 4.4347 -2.4433 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 3.8340 0.9765 -0.8891 35 1 3.8333 0.9768 0.8908 36 1 3.4222 3.4225 0.8894 37 1 3.4230 3.4215 -0.8905 38 1 5.7542 2.5752 -0.8882 39 1 5.7526 2.5764 0.8917 40 1 5.7319 4.5775 2.0978 41 1 4.2383 5.1505 1.3176 42 1 7.7796 5.7839 0.8027 43 1 9.9219 6.6756 2.1733 44 1 9.8601 7.4833 0.5884 45 1 13.0850 11.4690 3.4917 46 1 4.2200 7.3860 0.1474 47 1 5.7203 8.3424 0.0645 48 1 5.2697 7.1255 -2.0703 49 1 6.7852 6.5886 -1.3049 50 1 6.6617 4.4165 -2.5212 51 1 5.1957 3.4132 -2.4095 52 1 5.1570 4.9491 -3.3088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131828899.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:36 Heat of formation + Delta-G solvation = -96.874533 kcal Electronic energy + Delta-G solvation = -28171.191234 eV Core-core repulsion = 24296.325000 eV Total energy + Delta-G solvation = -3874.866234 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.41750 -38.81079 -38.27466 -35.38152 -33.65737 -32.38847 -32.26391 -31.54990 -30.45550 -28.85593 -26.99112 -25.72640 -25.40342 -23.42417 -23.25645 -22.49472 -21.42087 -20.26430 -18.92097 -17.85141 -17.22138 -16.88562 -16.49438 -16.16079 -15.74083 -15.35064 -15.17506 -14.94542 -14.76900 -14.66428 -14.17520 -14.01035 -13.84969 -13.43677 -13.32433 -13.01804 -12.91085 -12.79363 -12.57753 -12.34286 -12.24771 -12.18753 -11.99971 -11.86685 -11.80453 -11.69836 -11.42069 -11.18600 -11.03291 -10.98088 -10.80307 -10.73358 -10.71841 -10.30086 -10.05350 -9.76483 -9.26883 -9.02939 -8.79260 -8.51172 -8.17395 -6.44396 -6.17640 -3.87353 3.11327 3.16363 3.22133 3.25149 3.31019 3.36250 3.56380 3.89107 4.24784 4.43040 4.48694 4.55839 4.60715 4.62068 4.75732 4.78765 4.83324 4.88673 4.92883 4.98393 5.04720 5.11672 5.17465 5.20316 5.23560 5.27654 5.31461 5.33585 5.39580 5.42163 5.52386 5.56803 5.62568 5.65932 5.67687 5.71693 5.77744 5.88597 5.92360 5.98793 6.00150 6.19337 6.23054 6.24522 6.69505 6.75478 6.82491 6.91187 7.63698 7.94903 8.39441 8.77338 9.27751 10.89787 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022390 B = 0.001790 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.272014 B =15639.636138 C =15833.304436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.392 6.392 4 C 0.067 3.933 5 C -0.158 4.158 6 C 0.055 3.945 7 N -0.527 5.527 8 C 0.045 3.955 9 C 0.153 3.847 10 H 0.090 0.910 11 N -0.722 5.722 12 C 0.531 3.469 13 O -0.524 6.524 14 C -0.152 4.152 15 S -0.061 6.061 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.135 4.135 25 C -0.110 4.110 26 C 0.078 3.922 27 H 0.045 0.955 28 C -0.149 4.149 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.050 0.950 42 H 0.404 0.596 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.268 0.732 46 H 0.064 0.936 47 H 0.075 0.925 48 H 0.065 0.935 49 H 0.074 0.926 50 H 0.065 0.935 51 H 0.055 0.945 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.254 -22.351 -10.190 32.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.311 6.311 4 C -0.010 4.010 5 C -0.197 4.197 6 C -0.073 4.073 7 N -0.251 5.251 8 C -0.083 4.083 9 C 0.047 3.953 10 H 0.108 0.892 11 N -0.376 5.376 12 C 0.317 3.683 13 O -0.399 6.399 14 C -0.302 4.302 15 S 0.165 5.835 16 C -0.683 4.683 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.504 5.504 20 Si 0.744 3.256 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.174 4.174 25 C -0.148 4.148 26 C -0.030 4.030 27 H 0.063 0.937 28 C -0.206 4.206 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.068 0.932 42 H 0.240 0.760 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.093 0.907 50 H 0.084 0.916 51 H 0.074 0.926 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.753 -20.403 -9.290 31.237 hybrid contribution 1.290 -1.974 -0.866 2.512 sum -20.463 -22.377 -10.155 31.978 Atomic orbital electron populations 1.21749 0.93709 1.02280 1.03193 1.22456 0.95666 0.83801 1.00027 1.87897 1.21335 1.26466 1.95437 1.22410 0.81158 0.97305 1.00135 1.22252 0.98274 0.95539 1.03677 1.22182 0.92001 0.89775 1.03333 1.62153 1.59136 1.01589 1.02182 1.22432 0.98670 0.94798 0.92400 1.20850 0.81161 0.94246 0.99044 0.89178 1.45936 1.05819 1.23072 1.62786 1.20296 0.89203 0.81891 0.76917 1.90688 1.72141 1.33587 1.43440 1.23515 0.93856 1.07430 1.05445 1.85367 1.03182 1.18269 1.76663 1.22882 0.91302 1.08474 1.45625 0.90975 1.24979 0.99537 0.94483 0.94567 1.70022 1.34868 1.08288 1.37182 0.86182 0.82930 0.78472 0.77995 1.20303 1.20788 1.19719 1.21995 1.00299 1.00337 0.94720 1.21603 1.02286 0.93431 0.97499 1.21691 0.96784 0.94247 0.90243 0.93707 1.21922 1.02592 0.99901 0.96193 0.91075 0.91816 0.91850 0.93465 0.93424 0.93356 0.93287 0.90952 0.90715 0.89916 0.90423 0.89902 0.93196 0.76040 0.89395 0.89396 0.92247 0.91716 0.90666 0.91635 0.90724 0.91571 0.92575 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 10.28 37.16 0.38 -0.40 16 2 C 0.06 0.35 6.66 37.16 0.25 0.60 16 3 O -0.39 -3.36 10.34 -35.23 -0.36 -3.73 16 4 C 0.07 0.45 5.94 37.16 0.22 0.67 16 5 C -0.16 -1.08 4.78 -26.73 -0.13 -1.21 16 6 C 0.06 0.36 4.79 -3.83 -0.02 0.34 16 7 N -0.53 -4.28 4.17 -226.69 -0.94 -5.22 16 8 C 0.05 0.41 4.64 -3.83 -0.02 0.39 16 9 C 0.15 1.82 2.81 -67.85 -0.19 1.63 16 10 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 11 N -0.72 -9.91 4.41 -53.73 -0.24 -10.15 16 12 C 0.53 10.01 7.82 -10.99 -0.09 9.92 16 13 O -0.52 -11.91 15.52 5.55 0.09 -11.83 16 14 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 15 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 16 C -0.53 -15.41 9.50 30.94 0.29 -15.12 16 17 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 18 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -26.42 13.22 55.49 0.73 -25.68 16 20 Si 0.92 21.61 29.55 -169.99 -5.02 16.58 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 C -0.13 -1.53 5.67 -26.61 -0.15 -1.68 16 25 C -0.11 -1.08 5.21 -26.65 -0.14 -1.22 16 26 C 0.08 0.64 1.84 -67.72 -0.12 0.51 16 27 H 0.05 0.38 6.61 -51.93 -0.34 0.03 16 28 C -0.15 -1.06 8.69 37.16 0.32 -0.73 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.56 6.68 -51.93 -0.35 0.21 16 37 H 0.07 0.57 6.23 -51.93 -0.32 0.24 16 38 H 0.08 0.50 6.32 -51.93 -0.33 0.17 16 39 H 0.08 0.49 8.06 -51.93 -0.42 0.07 16 40 H 0.08 0.73 8.06 -51.93 -0.42 0.31 16 41 H 0.05 0.42 6.76 -51.93 -0.35 0.07 16 42 H 0.40 4.87 8.17 -40.82 -0.33 4.53 16 43 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 44 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 45 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.07 0.84 7.72 -51.93 -0.40 0.44 16 50 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.06 0.35 6.07 -51.93 -0.32 0.04 16 52 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 417.75 15.07 6.30 6.30 Total: -1.00 -33.96 417.75 -10.36 -44.32 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -9.44 Total: 0.49 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 0.74 Total: -7.19 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: -0.45 Total: -41.05 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.28 Total: -15.56 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.96 -10.36 -44.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131828899.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.551 kcal (2) G-P(sol) polarization free energy of solvation -33.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds