Wall clock time and date at job start Wed Apr 1 2020 03:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42909 * 109.46945 * 2 1 4 4 C 1.42902 * 113.99838 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46830 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46926 * 179.97438 * 5 4 3 7 7 N 1.46899 * 109.47036 * 179.97438 * 6 5 4 8 8 C 1.46847 * 110.99862 * 66.05037 * 7 6 5 9 9 C 1.53044 * 109.51335 * 174.15436 * 8 7 6 10 10 H 1.08999 * 109.49722 * 179.16244 * 9 8 7 11 11 N 1.46499 * 109.50328 * 299.24099 * 9 8 7 12 12 C 1.34772 * 120.00081 * 205.00133 * 11 9 8 13 13 O 1.21289 * 119.99777 * 0.02562 * 12 11 9 14 14 C 1.50696 * 120.00066 * 179.97438 * 12 11 9 15 15 S 1.81006 * 109.47260 * 179.97438 * 14 12 11 16 16 C 1.76196 * 100.00194 * 180.02562 * 15 14 12 17 17 H 1.08007 * 119.99665 * 359.97438 * 16 15 14 18 18 C 1.38793 * 120.00189 * 180.02562 * 16 15 14 19 19 N 1.31629 * 119.99855 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00384 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47182 * 89.99789 * 20 18 16 22 22 H 1.48497 * 109.47481 * 209.99914 * 20 18 16 23 23 H 1.48504 * 109.47161 * 329.99866 * 20 18 16 24 24 C 1.53119 * 109.27589 * 59.18419 * 9 8 7 25 25 C 1.53120 * 109.16202 * 302.34077 * 24 9 8 26 26 C 1.46847 * 110.99299 * 301.84195 * 7 6 5 27 27 H 1.08999 * 109.45820 * 65.84451 * 26 7 6 28 28 C 1.52999 * 109.46669 * 305.86103 * 26 7 6 29 29 H 1.08996 * 109.46818 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46893 * 300.00230 * 1 2 3 31 31 H 1.08995 * 109.46921 * 60.00111 * 1 2 3 32 32 H 1.08996 * 109.47068 * 240.00026 * 2 1 3 33 33 H 1.08996 * 109.46932 * 119.99332 * 2 1 3 34 34 H 1.08999 * 109.46854 * 59.99821 * 4 3 2 35 35 H 1.08996 * 109.46818 * 300.00214 * 4 3 2 36 36 H 1.08999 * 109.47343 * 60.00372 * 5 4 3 37 37 H 1.08997 * 109.47101 * 300.00131 * 5 4 3 38 38 H 1.09004 * 109.47161 * 60.00228 * 6 5 4 39 39 H 1.08996 * 109.47358 * 300.00580 * 6 5 4 40 40 H 1.09002 * 109.46448 * 54.14158 * 8 7 6 41 41 H 1.08994 * 109.45958 * 294.16523 * 8 7 6 42 42 H 0.97000 * 119.99929 * 24.99663 * 11 9 8 43 43 H 1.09002 * 109.47335 * 300.00300 * 14 12 11 44 44 H 1.09003 * 109.47258 * 60.00411 * 14 12 11 45 45 H 0.97004 * 120.00369 * 179.97438 * 19 18 16 46 46 H 1.08993 * 109.52284 * 62.25342 * 24 9 8 47 47 H 1.09003 * 109.51872 * 182.43790 * 24 9 8 48 48 H 1.08996 * 109.50328 * 177.59853 * 25 24 9 49 49 H 1.08996 * 109.50004 * 297.72216 * 25 24 9 50 50 H 1.08998 * 109.46934 * 299.96015 * 28 26 7 51 51 H 1.08998 * 109.46580 * 59.95213 * 28 26 7 52 52 H 1.08999 * 109.47163 * 179.97438 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8254 2.9385 -0.0001 6 6 5.3506 3.0593 0.0012 7 7 5.7293 4.4786 -0.0001 8 6 5.3261 5.1320 1.2517 9 6 5.8630 6.5650 1.2763 10 1 5.5510 7.0545 2.1989 11 7 7.3261 6.5404 1.2062 12 6 8.0419 7.5689 1.7024 13 8 7.4747 8.5146 2.2074 14 6 9.5469 7.5434 1.6307 15 16 10.2121 9.0540 2.3737 16 6 11.9371 8.7665 2.1593 17 1 12.2783 7.8586 1.6840 18 6 12.8576 9.7062 2.6021 19 7 12.4418 10.8124 3.1818 20 14 14.6864 9.4018 2.3742 21 1 15.1215 9.9570 1.0674 22 1 15.4390 10.0653 3.4690 23 1 14.9528 7.9412 2.4049 24 6 5.3063 7.3341 0.0750 25 6 5.6992 6.6062 -1.2136 26 6 5.1672 5.1721 -1.1661 27 1 4.0801 5.1905 -1.0884 28 6 5.5746 4.4347 -2.4433 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 3.8340 0.9765 -0.8891 35 1 3.8333 0.9768 0.8908 36 1 3.4222 3.4225 0.8894 37 1 3.4230 3.4215 -0.8905 38 1 5.7542 2.5752 -0.8882 39 1 5.7526 2.5764 0.8917 40 1 5.7319 4.5775 2.0978 41 1 4.2383 5.1505 1.3176 42 1 7.7796 5.7839 0.8027 43 1 9.9219 6.6756 2.1733 44 1 9.8601 7.4833 0.5884 45 1 13.0850 11.4690 3.4917 46 1 4.2200 7.3860 0.1474 47 1 5.7203 8.3424 0.0645 48 1 5.2697 7.1255 -2.0703 49 1 6.7852 6.5886 -1.3049 50 1 6.6617 4.4165 -2.5212 51 1 5.1957 3.4132 -2.4095 52 1 5.1570 4.9491 -3.3088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131828899.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:35 Heat of formation + Delta-G solvation = -119.889482 kcal Electronic energy + Delta-G solvation = -28172.189237 eV Core-core repulsion = 24296.325000 eV Total energy + Delta-G solvation = -3875.864237 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.36297 -39.94814 -38.94146 -36.36715 -34.58070 -34.50639 -32.82773 -32.66760 -31.03320 -30.28445 -27.87154 -27.56265 -26.35884 -24.10895 -23.69585 -23.12101 -22.52212 -21.35995 -19.87602 -19.78604 -18.03188 -17.62326 -17.39825 -17.21619 -16.86779 -16.62625 -16.30621 -16.21259 -15.85107 -15.65512 -15.46761 -14.83614 -14.77713 -14.56246 -14.50210 -14.14902 -13.94780 -13.55139 -13.44749 -13.30488 -13.14819 -12.99425 -12.94138 -12.87811 -12.79588 -12.62528 -12.53823 -12.39442 -12.28490 -11.96587 -11.86074 -11.70925 -11.59475 -11.46084 -11.13064 -11.08300 -10.86467 -10.54445 -10.25331 -10.00888 -9.23114 -8.64493 -8.33237 -6.10982 1.29060 1.43219 1.48652 1.59435 1.69175 2.28128 2.36761 2.69062 2.94670 3.00786 3.35722 3.70495 3.82547 3.90292 3.99705 4.07051 4.08556 4.12691 4.15807 4.32024 4.33344 4.38193 4.41804 4.43551 4.47040 4.49670 4.52750 4.53586 4.59101 4.61295 4.78330 4.81187 4.87253 4.89055 4.96238 5.00215 5.02564 5.03790 5.14727 5.22096 5.25701 5.26538 5.33411 5.43041 5.48097 5.62202 6.09700 6.16593 6.21191 6.30346 6.65176 7.07991 7.35388 8.76012 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022390 B = 0.001790 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.272014 B =15639.636138 C =15833.304436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.417 6.417 4 C 0.065 3.935 5 C -0.150 4.150 6 C 0.060 3.940 7 N -0.532 5.532 8 C 0.056 3.944 9 C 0.150 3.850 10 H 0.070 0.930 11 N -0.695 5.695 12 C 0.533 3.467 13 O -0.569 6.569 14 C -0.128 4.128 15 S -0.150 6.150 16 C -0.547 4.547 17 H 0.082 0.918 18 C 0.014 3.986 19 N -0.911 5.911 20 Si 0.998 3.002 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.258 1.258 24 C -0.132 4.132 25 C -0.106 4.106 26 C 0.083 3.917 27 H 0.048 0.952 28 C -0.144 4.144 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.417 0.583 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.271 0.729 46 H 0.080 0.920 47 H 0.041 0.959 48 H 0.073 0.927 49 H 0.060 0.940 50 H 0.060 0.940 51 H 0.067 0.933 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.970 -25.435 -11.578 34.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.338 6.338 4 C -0.012 4.012 5 C -0.189 4.189 6 C -0.068 4.068 7 N -0.256 5.256 8 C -0.072 4.072 9 C 0.044 3.956 10 H 0.088 0.912 11 N -0.348 5.348 12 C 0.319 3.681 13 O -0.448 6.448 14 C -0.279 4.279 15 S 0.077 5.923 16 C -0.695 4.695 17 H 0.100 0.900 18 C -0.191 4.191 19 N -0.548 5.548 20 Si 0.820 3.180 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.182 1.182 24 C -0.170 4.170 25 C -0.144 4.144 26 C -0.025 4.025 27 H 0.066 0.934 28 C -0.201 4.201 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.254 0.746 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.080 0.920 46 H 0.098 0.902 47 H 0.060 0.940 48 H 0.092 0.908 49 H 0.079 0.921 50 H 0.079 0.921 51 H 0.086 0.914 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.492 -23.548 -10.707 33.631 hybrid contribution 1.065 -1.086 -0.472 1.593 sum -20.427 -24.634 -11.179 33.898 Atomic orbital electron populations 1.21776 0.93330 1.03280 1.02507 1.22621 0.96093 0.83009 1.00824 1.87864 1.22370 1.27929 1.95616 1.22480 0.80523 0.97172 1.01004 1.22154 0.98258 0.95694 1.02801 1.22200 0.91816 0.88500 1.04256 1.62146 1.59331 1.02473 1.01610 1.22296 0.99088 0.92599 0.93263 1.21004 0.79556 0.96527 0.98476 0.91173 1.45701 1.06675 1.21682 1.60754 1.20033 0.88623 0.82394 0.77051 1.90678 1.72611 1.35601 1.45901 1.23353 0.94915 1.03851 1.05775 1.85542 1.04584 1.23885 1.78281 1.23216 0.91436 1.09015 1.45825 0.90019 1.26116 1.05175 0.93951 0.93828 1.70187 1.36836 1.09478 1.38303 0.84956 0.75779 0.79052 0.78208 1.19307 1.20254 1.18211 1.21940 1.01039 0.98605 0.95448 1.21573 1.01464 0.94687 0.96715 1.21636 0.96792 0.93160 0.90903 0.93436 1.21882 1.02255 1.00430 0.95575 0.89268 0.92584 0.92418 0.92499 0.92725 0.92247 0.92601 0.92000 0.91374 0.88834 0.89691 0.89254 0.92129 0.74557 0.87532 0.87680 0.92017 0.90173 0.94004 0.90837 0.92100 0.92109 0.91432 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.28 71.98 0.74 -0.64 16 2 C 0.05 0.54 6.66 71.98 0.48 1.02 16 3 O -0.42 -6.53 10.34 -148.98 -1.54 -8.07 16 4 C 0.07 0.72 5.94 71.98 0.43 1.15 16 5 C -0.15 -1.69 4.78 30.59 0.15 -1.55 16 6 C 0.06 0.61 4.79 86.30 0.41 1.02 16 7 N -0.53 -7.33 4.17 -871.10 -3.63 -10.96 16 8 C 0.06 0.90 4.64 86.33 0.40 1.30 16 9 C 0.15 3.48 2.81 45.05 0.13 3.61 16 10 H 0.07 1.96 7.58 -2.39 -0.02 1.94 16 11 N -0.69 -18.55 4.41 -442.28 -1.95 -20.50 16 12 C 0.53 20.27 7.82 87.66 0.69 20.95 16 13 O -0.57 -26.89 15.52 -3.06 -0.05 -26.93 16 14 C -0.13 -5.23 6.16 71.23 0.44 -4.79 16 15 S -0.15 -8.49 20.57 -56.49 -1.16 -9.65 16 16 C -0.55 -31.73 9.50 67.95 0.65 -31.08 16 17 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 18 C 0.01 0.80 5.49 84.86 0.47 1.27 16 19 N -0.91 -56.60 13.22 21.65 0.29 -56.31 16 20 Si 1.00 44.03 29.55 68.60 2.03 46.06 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 23 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 24 C -0.13 -2.97 5.67 30.67 0.17 -2.79 16 25 C -0.11 -1.96 5.21 30.65 0.16 -1.80 16 26 C 0.08 1.17 1.84 44.94 0.08 1.25 16 27 H 0.05 0.68 6.61 -2.39 -0.02 0.67 16 28 C -0.14 -1.67 8.69 71.98 0.63 -1.04 16 29 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.06 0.84 6.68 -2.39 -0.02 0.82 16 37 H 0.07 0.87 6.23 -2.39 -0.01 0.86 16 38 H 0.09 0.80 6.32 -2.38 -0.02 0.79 16 39 H 0.08 0.79 8.06 -2.39 -0.02 0.77 16 40 H 0.09 1.37 8.06 -2.39 -0.02 1.35 16 41 H 0.06 0.89 6.76 -2.39 -0.02 0.88 16 42 H 0.42 9.23 8.17 -92.71 -0.76 8.47 16 43 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 44 H 0.10 3.93 8.14 -2.39 -0.02 3.92 16 45 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 46 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.06 1.29 7.72 -2.39 -0.02 1.28 16 50 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.07 0.64 6.07 -2.39 -0.01 0.63 16 52 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -76.01 417.75 0.12 -75.89 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.13 Total: 22.61 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 6.01 Total: -12.13 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -5.29 Total: -87.77 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -1.59 Total: -35.00 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.65 kcal Total: -76.01 0.12 -75.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131828899.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.004 kcal (2) G-P(sol) polarization free energy of solvation -76.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds