Wall clock time and date at job start Wed Apr 1 2020 03:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.47094 * 2 1 4 4 C 1.42900 * 113.99705 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46983 * 180.02562 * 4 3 2 6 6 N 1.46895 * 109.47373 * 65.00075 * 5 4 3 7 7 C 1.46895 * 111.00272 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47169 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.49598 * 54.93919 * 8 7 6 10 10 C 1.52758 * 109.56735 * 294.96639 * 8 7 6 11 11 N 1.46927 * 109.01004 * 185.55360 * 10 8 7 12 12 C 1.34775 * 120.62728 * 233.58047 * 11 10 8 13 13 O 1.21275 * 120.00279 * 359.72752 * 12 11 10 14 14 C 1.50703 * 119.99776 * 179.71854 * 12 11 10 15 15 S 1.81000 * 109.47042 * 180.02562 * 14 12 11 16 16 C 1.76199 * 99.99871 * 180.02562 * 15 14 12 17 17 H 1.08009 * 120.00150 * 359.72084 * 16 15 14 18 18 C 1.38795 * 120.00161 * 180.02562 * 16 15 14 19 19 N 1.31634 * 120.00230 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00277 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47057 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 119.99818 * 20 18 16 23 23 H 1.48500 * 109.47148 * 239.99609 * 20 18 16 24 24 C 1.46918 * 118.73745 * 53.30786 * 11 10 8 25 25 C 1.53189 * 108.77865 * 306.64494 * 24 11 10 26 26 C 1.53036 * 109.31608 * 54.63440 * 25 24 11 27 27 H 1.09007 * 109.45848 * 58.65518 * 26 25 24 28 28 C 1.52997 * 109.46297 * 178.63157 * 26 25 24 29 29 H 1.08994 * 109.46852 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46890 * 299.99828 * 1 2 3 31 31 H 1.08997 * 109.46630 * 59.99718 * 1 2 3 32 32 H 1.09001 * 109.46890 * 240.00171 * 2 1 3 33 33 H 1.09001 * 109.47323 * 120.00092 * 2 1 3 34 34 H 1.09004 * 109.47672 * 60.00073 * 4 3 2 35 35 H 1.08999 * 109.47607 * 299.99910 * 4 3 2 36 36 H 1.09000 * 109.47301 * 304.99646 * 5 4 3 37 37 H 1.09001 * 109.46668 * 185.00259 * 5 4 3 38 38 H 1.00900 * 110.99712 * 303.95809 * 6 5 4 39 39 H 1.09002 * 109.47118 * 59.99994 * 7 6 5 40 40 H 1.09004 * 109.47122 * 299.99594 * 7 6 5 41 41 H 1.08994 * 109.50998 * 65.66826 * 10 8 7 42 42 H 1.09004 * 109.43061 * 305.39134 * 10 8 7 43 43 H 1.09000 * 109.46904 * 60.00309 * 14 12 11 44 44 H 1.09005 * 109.47194 * 300.00350 * 14 12 11 45 45 H 0.96991 * 120.00676 * 180.02562 * 19 18 16 46 46 H 1.09005 * 109.58961 * 66.43212 * 24 11 10 47 47 H 1.09006 * 109.58827 * 186.85473 * 24 11 10 48 48 H 1.09002 * 109.49924 * 174.59117 * 25 24 11 49 49 H 1.09007 * 109.49832 * 294.68431 * 25 24 11 50 50 H 1.08994 * 109.47469 * 60.00233 * 28 26 25 51 51 H 1.09004 * 109.46741 * 180.02562 * 28 26 25 52 52 H 1.09000 * 109.47026 * 299.99288 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8254 2.9383 0.0001 6 7 3.3868 3.5617 1.2559 7 6 3.7490 4.9848 1.2918 8 6 3.2762 5.5982 2.6113 9 1 3.6816 5.0248 3.4449 10 6 1.7501 5.5698 2.6710 11 7 1.3050 6.2796 3.8780 12 6 0.4750 5.6847 4.7575 13 8 0.0843 4.5548 4.5539 14 6 0.0324 6.4235 5.9942 15 16 -1.0684 5.3663 6.9671 16 6 -1.4224 6.4485 8.3118 17 1 -0.9828 7.4346 8.3415 18 6 -2.2611 6.0315 9.3360 19 7 -2.7925 4.8277 9.3026 20 14 -2.6370 7.1791 10.7612 21 1 -1.9219 8.4653 10.5629 22 1 -4.0995 7.4297 10.8225 23 1 -2.1882 6.5544 12.0314 24 6 1.7868 7.6478 4.1110 25 6 3.3170 7.6509 4.0380 26 6 3.7614 7.0468 2.7041 27 1 3.3362 7.6253 1.8838 28 6 5.2883 7.0794 2.6131 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8334 0.9766 -0.8908 35 1 3.8341 0.9764 0.8891 36 1 3.3493 3.4419 -0.8412 37 1 4.9082 3.0253 -0.0899 38 1 2.3951 3.4376 1.3939 39 1 3.2719 5.5023 0.4595 40 1 4.8312 5.0865 1.2106 41 1 1.4063 4.5362 2.7072 42 1 1.3435 6.0615 1.7871 43 1 -0.4970 7.3313 5.7051 44 1 0.9051 6.6866 6.5921 45 1 -3.3790 4.5363 10.0181 46 1 1.3833 8.3124 3.3470 47 1 1.4673 7.9848 5.0972 48 1 3.6828 8.6750 4.1135 49 1 3.7216 7.0582 4.8586 50 1 5.7136 6.5014 3.4335 51 1 5.6049 6.6495 1.6628 52 1 5.6341 8.1111 2.6779 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132688663.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:58 Heat of formation + Delta-G solvation = -99.220801 kcal Electronic energy + Delta-G solvation = -28411.378113 eV Core-core repulsion = 24536.410137 eV Total energy + Delta-G solvation = -3874.967976 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.16420 -38.52378 -37.87770 -35.95503 -33.96362 -32.40456 -32.34165 -31.16282 -29.59156 -28.81251 -27.50434 -25.51256 -25.00482 -23.33378 -22.97854 -22.33553 -21.69394 -20.20636 -19.06282 -17.63866 -17.03778 -16.69246 -16.48245 -16.06713 -15.48470 -15.30224 -15.19303 -14.78190 -14.73658 -14.46306 -13.95414 -13.91917 -13.80248 -13.40900 -13.35956 -13.19539 -12.88868 -12.80561 -12.57008 -12.40151 -12.10828 -12.01067 -11.78885 -11.72060 -11.66822 -11.46078 -11.33000 -11.12659 -11.05418 -10.98461 -10.89695 -10.72776 -10.49102 -10.38640 -9.81501 -9.75994 -9.26315 -9.04834 -8.61413 -8.42359 -8.17748 -6.46315 -6.18947 -3.88976 2.99349 3.13469 3.23201 3.28456 3.33084 3.45555 3.64945 3.89388 4.22715 4.52570 4.57729 4.61209 4.76015 4.82629 4.86153 4.96713 5.02345 5.05517 5.10010 5.14777 5.16111 5.16844 5.25334 5.28111 5.29587 5.33981 5.43188 5.47083 5.51094 5.54957 5.61226 5.62373 5.69721 5.73736 5.74811 5.78036 5.81054 5.92649 5.99289 5.99490 6.04911 6.08284 6.16138 6.31726 6.71940 6.80251 6.98993 7.22796 7.62085 7.65207 8.38061 8.64625 9.26363 10.88523 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009890 B = 0.002598 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.541721 B =10774.273256 C =13285.737119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.390 6.390 4 C 0.061 3.939 5 C 0.063 3.937 6 N -0.689 5.689 7 C 0.065 3.935 8 C -0.096 4.096 9 H 0.086 0.914 10 C 0.117 3.883 11 N -0.618 5.618 12 C 0.534 3.466 13 O -0.515 6.515 14 C -0.150 4.150 15 S -0.061 6.061 16 C -0.533 4.533 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.918 3.082 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.107 3.893 25 C -0.130 4.130 26 C -0.085 4.085 27 H 0.070 0.930 28 C -0.148 4.148 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.036 0.964 37 H 0.083 0.917 38 H 0.353 0.647 39 H 0.029 0.971 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.057 0.943 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.267 0.733 46 H 0.065 0.935 47 H 0.090 0.910 48 H 0.074 0.926 49 H 0.070 0.930 50 H 0.056 0.944 51 H 0.056 0.944 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.625 0.456 -20.974 26.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.016 4.016 3 O -0.310 6.310 4 C -0.015 4.015 5 C -0.066 4.066 6 N -0.323 5.323 7 C -0.064 4.064 8 C -0.116 4.116 9 H 0.104 0.896 10 C -0.006 4.006 11 N -0.354 5.354 12 C 0.322 3.678 13 O -0.389 6.389 14 C -0.300 4.300 15 S 0.165 5.835 16 C -0.682 4.682 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.016 4.016 25 C -0.168 4.168 26 C -0.104 4.104 27 H 0.088 0.912 28 C -0.205 4.205 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.101 0.899 38 H 0.174 0.826 39 H 0.047 0.953 40 H 0.096 0.904 41 H 0.113 0.887 42 H 0.075 0.925 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.108 0.892 48 H 0.093 0.907 49 H 0.089 0.911 50 H 0.075 0.925 51 H 0.075 0.925 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.334 -1.410 -20.834 26.511 hybrid contribution -0.177 2.237 0.507 2.300 sum 16.157 0.827 -20.327 25.979 Atomic orbital electron populations 1.21760 0.93579 1.02307 1.03459 1.22435 0.95767 0.83528 0.99839 1.87866 1.20931 1.26765 1.95411 1.22558 0.81710 0.96830 1.00446 1.21940 1.00329 0.93078 0.91294 1.60509 1.23594 1.13780 1.34397 1.22032 1.00904 0.87553 0.95949 1.21507 0.95641 0.95857 0.98558 0.89600 1.21458 0.93251 0.99121 0.86770 1.48047 1.48601 1.15449 1.23300 1.20318 0.77477 0.86441 0.83548 1.90691 1.54595 1.18271 1.75390 1.23548 1.04714 1.04203 0.97554 1.85412 1.56307 1.20052 1.21691 1.22900 1.34267 1.02755 1.08238 0.90943 1.24991 0.95039 0.95623 0.97974 1.70029 1.30053 1.17304 1.32892 0.86125 0.78209 0.80173 0.81031 1.19636 1.20585 1.20593 1.21719 0.94019 0.83229 1.02667 1.21988 0.95558 1.01456 0.97809 1.21099 0.95943 0.95498 0.97845 0.91182 1.21885 0.95107 1.01603 1.01896 0.91141 0.91262 0.92058 0.93794 0.93222 0.93156 0.92238 0.94571 0.89859 0.82644 0.95250 0.90410 0.88708 0.92462 0.89377 0.89340 0.92272 0.91675 0.89219 0.90701 0.91143 0.92459 0.92501 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.28 37.16 0.38 -0.99 16 2 C 0.06 0.55 6.66 37.16 0.25 0.80 16 3 O -0.39 -4.30 9.86 -35.23 -0.35 -4.65 16 4 C 0.06 0.54 6.28 37.16 0.23 0.77 16 5 C 0.06 0.54 6.11 -3.82 -0.02 0.51 16 6 N -0.69 -7.15 6.50 -113.78 -0.74 -7.89 16 7 C 0.07 0.59 4.90 -3.83 -0.02 0.57 16 8 C -0.10 -0.99 2.08 -90.72 -0.19 -1.18 16 9 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 10 C 0.12 1.52 5.32 -3.93 -0.02 1.49 16 11 N -0.62 -9.15 2.98 -173.04 -0.52 -9.67 16 12 C 0.53 10.54 7.72 -10.98 -0.08 10.46 16 13 O -0.52 -12.15 15.27 5.56 0.08 -12.06 16 14 C -0.15 -3.12 4.50 36.01 0.16 -2.96 16 15 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 16 C -0.53 -15.33 9.50 30.94 0.29 -15.03 16 17 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.38 13.22 55.49 0.73 -25.64 16 20 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.11 1.21 6.34 -3.72 -0.02 1.19 16 25 C -0.13 -1.21 5.36 -26.61 -0.14 -1.35 16 26 C -0.08 -0.73 2.23 -90.58 -0.20 -0.93 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 C -0.15 -1.07 8.82 37.16 0.33 -0.75 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.35 4.25 6.68 -39.29 -0.26 3.99 16 39 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.08 0.63 6.14 -51.93 -0.32 0.31 16 41 H 0.09 1.46 5.81 -51.93 -0.30 1.15 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 1.70 7.94 -51.92 -0.41 1.29 16 44 H 0.09 1.71 7.69 -51.91 -0.40 1.31 16 45 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.09 1.05 5.93 -51.93 -0.31 0.74 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.06 0.37 6.29 -51.93 -0.33 0.05 16 52 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 420.03 15.07 6.33 6.33 Total: -1.00 -34.29 420.03 -10.33 -44.61 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -9.48 Total: 1.73 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 0.85 Total: -5.39 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: -0.52 Total: -43.20 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.26 Total: -16.71 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -34.29 -10.33 -44.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132688663.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.607 kcal (2) G-P(sol) polarization free energy of solvation -34.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds