Wall clock time and date at job start Wed Apr 1 2020 03:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.47094 * 2 1 4 4 C 1.42900 * 113.99705 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46983 * 180.02562 * 4 3 2 6 6 N 1.46895 * 109.47373 * 65.00075 * 5 4 3 7 7 C 1.46895 * 111.00272 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47169 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.49598 * 54.93919 * 8 7 6 10 10 C 1.52758 * 109.56735 * 294.96639 * 8 7 6 11 11 N 1.46927 * 109.01004 * 185.55360 * 10 8 7 12 12 C 1.34775 * 120.62728 * 233.58047 * 11 10 8 13 13 O 1.21275 * 120.00279 * 359.72752 * 12 11 10 14 14 C 1.50703 * 119.99776 * 179.71854 * 12 11 10 15 15 S 1.81000 * 109.47042 * 180.02562 * 14 12 11 16 16 C 1.76199 * 99.99871 * 180.02562 * 15 14 12 17 17 H 1.08009 * 120.00150 * 359.72084 * 16 15 14 18 18 C 1.38795 * 120.00161 * 180.02562 * 16 15 14 19 19 N 1.31634 * 120.00230 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00277 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47057 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 119.99818 * 20 18 16 23 23 H 1.48500 * 109.47148 * 239.99609 * 20 18 16 24 24 C 1.46918 * 118.73745 * 53.30786 * 11 10 8 25 25 C 1.53189 * 108.77865 * 306.64494 * 24 11 10 26 26 C 1.53036 * 109.31608 * 54.63440 * 25 24 11 27 27 H 1.09007 * 109.45848 * 58.65518 * 26 25 24 28 28 C 1.52997 * 109.46297 * 178.63157 * 26 25 24 29 29 H 1.08994 * 109.46852 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46890 * 299.99828 * 1 2 3 31 31 H 1.08997 * 109.46630 * 59.99718 * 1 2 3 32 32 H 1.09001 * 109.46890 * 240.00171 * 2 1 3 33 33 H 1.09001 * 109.47323 * 120.00092 * 2 1 3 34 34 H 1.09004 * 109.47672 * 60.00073 * 4 3 2 35 35 H 1.08999 * 109.47607 * 299.99910 * 4 3 2 36 36 H 1.09000 * 109.47301 * 304.99646 * 5 4 3 37 37 H 1.09001 * 109.46668 * 185.00259 * 5 4 3 38 38 H 1.00900 * 110.99712 * 303.95809 * 6 5 4 39 39 H 1.09002 * 109.47118 * 59.99994 * 7 6 5 40 40 H 1.09004 * 109.47122 * 299.99594 * 7 6 5 41 41 H 1.08994 * 109.50998 * 65.66826 * 10 8 7 42 42 H 1.09004 * 109.43061 * 305.39134 * 10 8 7 43 43 H 1.09000 * 109.46904 * 60.00309 * 14 12 11 44 44 H 1.09005 * 109.47194 * 300.00350 * 14 12 11 45 45 H 0.96991 * 120.00676 * 180.02562 * 19 18 16 46 46 H 1.09005 * 109.58961 * 66.43212 * 24 11 10 47 47 H 1.09006 * 109.58827 * 186.85473 * 24 11 10 48 48 H 1.09002 * 109.49924 * 174.59117 * 25 24 11 49 49 H 1.09007 * 109.49832 * 294.68431 * 25 24 11 50 50 H 1.08994 * 109.47469 * 60.00233 * 28 26 25 51 51 H 1.09004 * 109.46741 * 180.02562 * 28 26 25 52 52 H 1.09000 * 109.47026 * 299.99288 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8254 2.9383 0.0001 6 7 3.3868 3.5617 1.2559 7 6 3.7490 4.9848 1.2918 8 6 3.2762 5.5982 2.6113 9 1 3.6816 5.0248 3.4449 10 6 1.7501 5.5698 2.6710 11 7 1.3050 6.2796 3.8780 12 6 0.4750 5.6847 4.7575 13 8 0.0843 4.5548 4.5539 14 6 0.0324 6.4235 5.9942 15 16 -1.0684 5.3663 6.9671 16 6 -1.4224 6.4485 8.3118 17 1 -0.9828 7.4346 8.3415 18 6 -2.2611 6.0315 9.3360 19 7 -2.7925 4.8277 9.3026 20 14 -2.6370 7.1791 10.7612 21 1 -1.9219 8.4653 10.5629 22 1 -4.0995 7.4297 10.8225 23 1 -2.1882 6.5544 12.0314 24 6 1.7868 7.6478 4.1110 25 6 3.3170 7.6509 4.0380 26 6 3.7614 7.0468 2.7041 27 1 3.3362 7.6253 1.8838 28 6 5.2883 7.0794 2.6131 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8334 0.9766 -0.8908 35 1 3.8341 0.9764 0.8891 36 1 3.3493 3.4419 -0.8412 37 1 4.9082 3.0253 -0.0899 38 1 2.3951 3.4376 1.3939 39 1 3.2719 5.5023 0.4595 40 1 4.8312 5.0865 1.2106 41 1 1.4063 4.5362 2.7072 42 1 1.3435 6.0615 1.7871 43 1 -0.4970 7.3313 5.7051 44 1 0.9051 6.6866 6.5921 45 1 -3.3790 4.5363 10.0181 46 1 1.3833 8.3124 3.3470 47 1 1.4673 7.9848 5.0972 48 1 3.6828 8.6750 4.1135 49 1 3.7216 7.0582 4.8586 50 1 5.7136 6.5014 3.4335 51 1 5.6049 6.6495 1.6628 52 1 5.6341 8.1111 2.6779 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132688663.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:57 Heat of formation + Delta-G solvation = -122.462390 kcal Electronic energy + Delta-G solvation = -28412.385944 eV Core-core repulsion = 24536.410137 eV Total energy + Delta-G solvation = -3875.975807 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.34568 -39.42976 -38.95040 -36.83998 -35.02566 -34.58501 -33.15919 -32.03817 -31.00764 -29.59461 -28.50387 -27.65058 -25.94971 -24.31394 -23.70842 -23.07997 -22.47623 -21.22390 -20.35966 -19.50057 -18.14993 -17.76411 -17.29945 -17.08954 -16.88394 -16.65432 -16.56968 -15.99822 -15.72562 -15.55048 -15.28569 -14.91170 -14.68820 -14.54808 -14.48330 -14.34973 -14.01827 -13.82439 -13.57349 -13.45975 -13.19235 -13.11227 -12.91626 -12.78786 -12.70940 -12.62924 -12.49198 -12.35934 -12.19751 -12.12559 -11.89988 -11.73448 -11.68344 -11.33104 -11.19958 -11.15979 -10.80331 -10.54752 -10.25782 -9.65573 -9.36316 -8.67862 -8.34606 -6.13256 1.25340 1.41481 1.45685 1.56972 1.58143 2.10836 2.27082 2.76898 2.99393 3.16579 3.25124 3.62656 3.75339 3.80470 3.94965 4.00899 4.08799 4.14194 4.22985 4.24740 4.29435 4.34468 4.37479 4.42599 4.47138 4.47468 4.52289 4.56560 4.61310 4.69571 4.75912 4.78682 4.84766 4.86736 4.93126 4.95021 5.00917 5.03075 5.09722 5.15442 5.23297 5.24223 5.41654 5.42950 5.56023 5.59495 6.09472 6.19922 6.28953 6.30301 6.34842 7.06346 7.15130 8.75009 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009890 B = 0.002598 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.541721 B =10774.273256 C =13285.737119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 O -0.415 6.415 4 C 0.058 3.942 5 C 0.064 3.936 6 N -0.706 5.706 7 C 0.071 3.929 8 C -0.086 4.086 9 H 0.059 0.941 10 C 0.116 3.884 11 N -0.605 5.605 12 C 0.530 3.470 13 O -0.567 6.567 14 C -0.121 4.121 15 S -0.154 6.154 16 C -0.543 4.543 17 H 0.083 0.917 18 C 0.012 3.988 19 N -0.912 5.912 20 Si 1.000 3.000 21 H -0.256 1.256 22 H -0.273 1.273 23 H -0.274 1.274 24 C 0.097 3.903 25 C -0.125 4.125 26 C -0.080 4.080 27 H 0.086 0.914 28 C -0.143 4.143 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.037 0.963 37 H 0.103 0.897 38 H 0.340 0.660 39 H 0.040 0.960 40 H 0.094 0.906 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.271 0.729 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.103 0.897 49 H 0.054 0.946 50 H 0.046 0.954 51 H 0.066 0.934 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.653 3.242 -22.089 29.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.336 6.336 4 C -0.018 4.018 5 C -0.065 4.065 6 N -0.338 5.338 7 C -0.058 4.058 8 C -0.105 4.105 9 H 0.077 0.923 10 C -0.007 4.007 11 N -0.339 5.339 12 C 0.317 3.683 13 O -0.445 6.445 14 C -0.272 4.272 15 S 0.074 5.926 16 C -0.691 4.691 17 H 0.101 0.899 18 C -0.193 4.193 19 N -0.548 5.548 20 Si 0.822 3.178 21 H -0.179 1.179 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.025 4.025 25 C -0.163 4.163 26 C -0.099 4.099 27 H 0.105 0.895 28 C -0.200 4.200 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.121 0.879 38 H 0.158 0.842 39 H 0.058 0.942 40 H 0.112 0.888 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.080 0.920 46 H 0.109 0.891 47 H 0.105 0.895 48 H 0.122 0.878 49 H 0.073 0.927 50 H 0.065 0.935 51 H 0.085 0.915 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 18.420 1.418 -21.986 28.718 hybrid contribution -0.729 1.373 0.733 1.719 sum 17.691 2.792 -21.254 27.794 Atomic orbital electron populations 1.21776 0.93823 1.03190 1.02249 1.22552 0.95672 0.83081 1.00711 1.87841 1.22300 1.27841 1.95574 1.22684 0.80746 0.97313 1.01057 1.22026 1.01376 0.92667 0.90385 1.60565 1.22621 1.14877 1.35729 1.22034 1.01791 0.86821 0.95178 1.21408 0.93227 0.97355 0.98534 0.92262 1.21588 0.95313 0.97462 0.86292 1.48077 1.46599 1.16712 1.22475 1.20176 0.78260 0.85858 0.83981 1.90674 1.56967 1.20351 1.76539 1.23352 1.03608 1.03022 0.97240 1.85623 1.59088 1.23992 1.23946 1.23212 1.34585 1.02940 1.08368 0.89912 1.26156 0.94535 0.97405 1.01162 1.70196 1.30884 1.19602 1.34149 0.84884 0.78235 0.78072 0.76611 1.17923 1.19883 1.19927 1.22085 0.95746 0.81186 1.03473 1.21984 0.93622 1.02969 0.97736 1.21100 0.97105 0.93778 0.97907 0.89546 1.21846 0.93660 1.02481 1.02060 0.89259 0.93661 0.91981 0.91695 0.93462 0.90945 0.93104 0.94447 0.87893 0.84202 0.94202 0.88800 0.91809 0.90600 0.87481 0.87665 0.91998 0.89084 0.89494 0.87824 0.92737 0.93479 0.91488 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 10.28 71.98 0.74 -2.09 16 2 C 0.06 1.03 6.66 71.98 0.48 1.51 16 3 O -0.42 -9.32 9.86 -148.98 -1.47 -10.79 16 4 C 0.06 1.00 6.28 71.98 0.45 1.45 16 5 C 0.06 1.02 6.11 86.31 0.53 1.55 16 6 N -0.71 -14.49 6.50 -513.90 -3.34 -17.83 16 7 C 0.07 1.16 4.90 86.30 0.42 1.58 16 8 C -0.09 -1.68 2.08 -10.86 -0.02 -1.70 16 9 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 10 C 0.12 2.98 5.32 86.22 0.46 3.44 16 11 N -0.60 -17.64 2.98 -819.76 -2.44 -20.08 16 12 C 0.53 21.45 7.72 87.66 0.68 22.13 16 13 O -0.57 -28.32 15.27 -3.01 -0.05 -28.37 16 14 C -0.12 -5.10 4.50 71.24 0.32 -4.77 16 15 S -0.15 -8.84 20.57 -56.49 -1.16 -10.00 16 16 C -0.54 -31.57 9.50 67.95 0.65 -30.92 16 17 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 18 C 0.01 0.69 5.49 84.86 0.47 1.16 16 19 N -0.91 -56.88 13.22 21.65 0.29 -56.60 16 20 Si 1.00 44.11 29.55 68.60 2.03 46.13 16 21 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 24 C 0.10 1.96 6.34 86.36 0.55 2.51 16 25 C -0.13 -1.97 5.36 30.67 0.16 -1.81 16 26 C -0.08 -1.13 2.23 -10.77 -0.02 -1.15 16 27 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 28 C -0.14 -1.61 8.82 71.98 0.63 -0.97 16 29 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 36 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.34 8.56 6.68 -89.69 -0.60 7.96 16 39 H 0.04 0.58 8.14 -2.39 -0.02 0.57 16 40 H 0.09 1.25 6.14 -2.39 -0.01 1.24 16 41 H 0.06 2.08 5.81 -2.39 -0.01 2.07 16 42 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 43 H 0.11 4.07 7.94 -2.39 -0.02 4.05 16 44 H 0.11 4.04 7.69 -2.39 -0.02 4.02 16 45 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 46 H 0.09 1.45 8.14 -2.38 -0.02 1.44 16 47 H 0.09 1.83 5.93 -2.38 -0.01 1.81 16 48 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 50 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 51 H 0.07 0.63 6.29 -2.38 -0.02 0.62 16 52 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -78.85 420.03 0.63 -78.22 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: 0.28 Total: 27.41 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 6.49 Total: -8.11 kcal Atomic # 7 Polarization: -89.01 SS G_CDS: -5.50 Total: -94.51 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -1.52 Total: -39.16 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.16 Total: -10.00 kcal Total: -78.85 0.63 -78.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132688663.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.239 kcal (2) G-P(sol) polarization free energy of solvation -78.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds