Wall clock time and date at job start Wed Apr 1 2020 03:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46920 * 124.35566 * 2 1 4 4 C 1.53820 * 105.35560 * 196.40800 * 3 2 1 5 5 C 1.53993 * 102.45282 * 335.28165 * 4 3 2 6 6 C 1.34511 * 124.35242 * 179.97438 * 2 1 3 7 7 O 1.21273 * 124.94221 * 359.67190 * 6 2 1 8 8 C 1.52229 * 110.63146 * 93.08673 * 4 3 2 9 9 C 1.53241 * 109.42160 * 66.68033 * 8 4 3 10 10 C 1.53139 * 109.06125 * 56.42900 * 9 8 4 11 11 C 1.53039 * 109.34336 * 301.66865 * 10 9 8 12 12 N 1.45970 * 110.79751 * 217.23176 * 4 3 2 13 13 C 1.46898 * 111.00445 * 60.10668 * 12 4 3 14 14 C 1.50697 * 109.47252 * 171.14713 * 13 12 4 15 15 C 1.38302 * 119.92924 * 275.25192 * 14 13 12 16 16 C 1.38106 * 120.06695 * 179.72636 * 15 14 13 17 17 C 1.38883 * 119.92642 * 0.57022 * 16 15 14 18 18 O 1.35752 * 120.06493 * 179.68434 * 17 16 15 19 19 C 1.34825 * 116.99908 * 185.76778 * 18 17 16 20 20 H 1.07999 * 119.99983 * 354.92304 * 19 18 17 21 21 C 1.38659 * 120.00094 * 174.91821 * 19 18 17 22 22 N 1.31557 * 120.00030 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99922 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47329 * 90.00281 * 23 21 19 25 25 H 1.48503 * 109.47298 * 209.99924 * 23 21 19 26 26 H 1.48501 * 109.47315 * 330.00019 * 23 21 19 27 27 C 1.38873 * 119.86385 * 359.70373 * 17 16 15 28 28 C 1.38096 * 119.93127 * 0.02562 * 27 17 16 29 29 H 1.08997 * 109.47520 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47174 * 300.04699 * 1 2 3 31 31 H 1.09004 * 109.47308 * 60.04517 * 1 2 3 32 32 H 1.09002 * 110.26922 * 77.43595 * 3 2 1 33 33 H 1.08995 * 110.26784 * 315.37946 * 3 2 1 34 34 H 1.08999 * 110.50944 * 142.78148 * 5 4 3 35 35 H 1.09004 * 110.50614 * 265.48731 * 5 4 3 36 36 H 1.09002 * 109.47510 * 306.69976 * 8 4 3 37 37 H 1.08993 * 109.48808 * 186.67786 * 8 4 3 38 38 H 1.08999 * 109.54444 * 296.55012 * 9 8 4 39 39 H 1.09004 * 109.54105 * 176.29859 * 9 8 4 40 40 H 1.08998 * 109.49512 * 181.70816 * 10 9 8 41 41 H 1.09000 * 109.49291 * 61.62572 * 10 9 8 42 42 H 1.09005 * 109.47174 * 299.82802 * 11 10 9 43 43 H 1.09004 * 109.46687 * 179.83513 * 11 10 9 44 44 H 1.08998 * 109.47345 * 291.14925 * 13 12 4 45 45 H 1.09008 * 109.46978 * 51.14603 * 13 12 4 46 46 H 1.08004 * 119.96758 * 359.97438 * 15 14 13 47 47 H 1.08001 * 120.03588 * 180.27320 * 16 15 14 48 48 H 0.96990 * 120.00214 * 180.02562 * 22 21 19 49 49 H 1.08005 * 120.03424 * 179.97438 * 27 17 16 50 50 H 1.08002 * 119.96222 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2940 1.2129 0.0000 4 6 3.6986 0.7462 -0.4190 5 6 3.6915 -0.7380 -0.0084 6 6 2.2240 -1.1105 0.0005 7 8 1.7952 -2.2449 0.0067 8 6 3.8823 0.8823 -1.9240 9 6 3.8715 2.3662 -2.3066 10 6 4.9592 3.0952 -1.5126 11 6 4.7037 2.9104 -0.0150 12 7 4.7278 1.4780 0.3131 13 6 4.5946 1.2673 1.7608 14 6 5.7907 1.8530 2.4658 15 6 6.9497 1.1091 2.5926 16 6 8.0495 1.6452 3.2332 17 6 7.9867 2.9284 3.7607 18 8 9.0640 3.4557 4.3966 19 6 8.8985 4.6557 4.9886 20 1 7.9671 5.1903 4.8743 21 6 9.9240 5.2034 5.7442 22 7 11.0587 4.5523 5.8831 23 14 9.6944 6.8656 6.5649 24 1 9.1302 6.6725 7.9249 25 1 11.0068 7.5530 6.6666 26 1 8.7637 7.6928 5.7557 27 6 6.8196 3.6707 3.6368 28 6 5.7252 3.1311 2.9902 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5146 0.8896 31 1 -0.3634 0.5131 -0.8904 32 1 2.3235 1.6502 0.9980 33 1 1.9063 1.9353 -0.7182 34 1 4.2337 -1.3388 -0.7387 35 1 4.1230 -0.8614 0.9850 36 1 3.0693 0.3687 -2.4373 37 1 4.8341 0.4385 -2.2158 38 1 2.8980 2.7963 -2.0711 39 1 4.0684 2.4690 -3.3737 40 1 4.9378 4.1573 -1.7568 41 1 5.9349 2.6823 -1.7687 42 1 3.7288 3.3255 0.2412 43 1 5.4786 3.4262 0.5521 44 1 3.6876 1.7556 2.1172 45 1 4.5375 0.1987 1.9687 46 1 6.9961 0.1093 2.1866 47 1 8.9557 1.0654 3.3280 48 1 11.7759 4.9352 6.4120 49 1 6.7677 4.6687 4.0464 50 1 4.8174 3.7081 2.8931 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137116704.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:40 Heat of formation + Delta-G solvation = -38.494731 kcal Electronic energy + Delta-G solvation = -30758.149571 eV Core-core repulsion = 26750.370924 eV Total energy + Delta-G solvation = -4007.778647 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.39402 -40.75372 -39.70691 -38.27024 -36.71920 -34.96386 -34.19755 -33.56672 -31.74103 -30.94687 -29.56347 -28.44219 -27.61691 -26.60113 -26.05237 -24.08540 -23.50043 -22.54151 -21.77734 -20.87541 -19.79898 -19.47338 -18.78994 -17.96796 -17.51415 -16.83313 -16.47479 -16.36409 -16.23332 -15.96488 -15.59615 -15.45496 -15.34669 -15.22526 -15.00609 -14.71534 -14.31153 -14.27050 -14.14743 -14.02001 -13.72427 -13.58819 -13.43809 -13.26805 -13.13550 -12.94534 -12.71579 -12.57231 -12.36141 -12.26786 -12.15651 -12.09157 -12.02242 -11.53660 -11.31971 -11.17649 -11.10861 -10.87118 -10.76021 -9.79358 -9.71337 -9.21816 -8.84136 -8.45225 -6.13054 0.65316 0.71482 1.35820 1.45011 1.47929 1.53121 2.01919 2.18917 2.65753 2.94556 3.23061 3.33940 3.52675 3.57707 3.71799 3.76221 3.93429 4.05161 4.09774 4.23100 4.25107 4.27643 4.34704 4.39228 4.43590 4.51480 4.57783 4.60335 4.67095 4.69527 4.72861 4.81724 4.83657 4.90025 4.95008 4.98313 5.10611 5.11913 5.15805 5.18210 5.27978 5.34401 5.38419 5.46990 5.53630 5.62512 5.75576 5.83378 5.99649 6.05643 6.12690 6.22432 6.29593 6.99814 7.07741 7.82282 8.78264 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019165 B = 0.002376 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.677971 B =11782.812517 C =12110.235343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.616 5.616 3 C 0.072 3.928 4 C 0.116 3.884 5 C -0.153 4.153 6 C 0.513 3.487 7 O -0.581 6.581 8 C -0.098 4.098 9 C -0.115 4.115 10 C -0.116 4.116 11 C 0.053 3.947 12 N -0.517 5.517 13 C 0.104 3.896 14 C -0.149 4.149 15 C -0.045 4.045 16 C -0.207 4.207 17 C 0.115 3.885 18 O -0.235 6.235 19 C -0.411 4.411 20 H 0.102 0.898 21 C -0.025 4.025 22 N -0.922 5.922 23 Si 1.017 2.983 24 H -0.264 1.264 25 H -0.273 1.273 26 H -0.251 1.251 27 C -0.242 4.242 28 C -0.058 4.058 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.048 0.952 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.092 0.908 46 H 0.142 0.858 47 H 0.108 0.892 48 H 0.272 0.728 49 H 0.117 0.883 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.431 -2.783 -16.156 26.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.349 5.349 3 C -0.053 4.053 4 C 0.025 3.975 5 C -0.192 4.192 6 C 0.302 3.698 7 O -0.462 6.462 8 C -0.135 4.135 9 C -0.152 4.152 10 C -0.154 4.154 11 C -0.074 4.074 12 N -0.240 5.240 13 C -0.022 4.022 14 C -0.150 4.150 15 C -0.064 4.064 16 C -0.226 4.226 17 C 0.064 3.936 18 O -0.142 6.142 19 C -0.487 4.487 20 H 0.119 0.881 21 C -0.222 4.222 22 N -0.561 5.561 23 Si 0.837 3.163 24 H -0.189 1.189 25 H -0.197 1.197 26 H -0.175 1.175 27 C -0.261 4.261 28 C -0.076 4.076 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.110 0.890 46 H 0.160 0.840 47 H 0.126 0.874 48 H 0.081 0.919 49 H 0.134 0.866 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.879 -3.585 -16.187 26.661 hybrid contribution -0.144 0.929 1.073 1.426 sum -21.024 -2.656 -15.114 26.029 Atomic orbital electron populations 1.21731 0.77127 1.03345 1.03270 1.48311 1.07262 1.07054 1.72283 1.23031 0.91490 0.87574 1.03179 1.21284 0.88194 0.92091 0.95937 1.22643 0.93093 0.97125 1.06370 1.21297 0.90245 0.84004 0.74276 1.90692 1.79502 1.22927 1.53080 1.21444 1.02908 0.97909 0.91281 1.21616 0.99045 0.94116 1.00460 1.21579 0.99523 1.00835 0.93447 1.22169 1.00768 0.87236 0.97275 1.61717 1.45882 1.10716 1.05697 1.21023 0.93758 1.01088 0.86318 1.19438 0.96372 0.94927 1.04266 1.20799 0.90909 0.99697 0.94974 1.20447 1.01033 0.93818 1.07318 1.19942 0.87633 0.93480 0.92499 1.83945 1.32670 1.35316 1.62245 1.21806 1.03055 0.93847 1.29973 0.88054 1.26581 0.94132 1.04191 0.97263 1.70185 1.05352 1.40635 1.39915 0.84601 0.78494 0.74767 0.78455 1.18941 1.19741 1.17469 1.21199 0.94638 1.01569 1.08704 1.20903 0.96869 0.94854 0.94994 0.91387 0.90612 0.89964 0.90414 0.88083 0.86888 0.86326 0.90960 0.90653 0.90990 0.90523 0.90640 0.92226 0.93376 0.91600 0.92804 0.89013 0.83985 0.87421 0.91927 0.86568 0.84499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.03 11.15 127.77 1.42 2.46 16 2 N -0.62 -9.72 3.34 -843.52 -2.82 -12.53 16 3 C 0.07 0.87 5.11 86.58 0.44 1.32 16 4 C 0.12 1.64 0.60 4.06 0.00 1.64 16 5 C -0.15 -2.58 5.87 30.41 0.18 -2.40 16 6 C 0.51 11.02 8.04 87.93 0.71 11.72 16 7 O -0.58 -17.54 17.35 -3.01 -0.05 -17.59 16 8 C -0.10 -1.20 4.75 30.42 0.14 -1.05 16 9 C -0.11 -1.21 5.80 30.72 0.18 -1.03 16 10 C -0.12 -1.67 6.07 30.65 0.19 -1.49 16 11 C 0.05 0.90 4.97 86.30 0.43 1.33 16 12 N -0.52 -9.02 4.50 -851.06 -3.83 -12.85 16 13 C 0.10 2.04 4.40 85.56 0.38 2.41 16 14 C -0.15 -4.15 4.67 -19.84 -0.09 -4.25 16 15 C -0.05 -1.45 9.71 22.25 0.22 -1.23 16 16 C -0.21 -8.64 9.99 22.39 0.22 -8.42 16 17 C 0.11 5.59 6.65 22.58 0.15 5.74 16 18 O -0.23 -14.07 9.76 -22.71 -0.22 -14.29 16 19 C -0.41 -23.68 9.49 67.92 0.64 -23.04 16 20 H 0.10 5.33 5.21 -2.91 -0.02 5.31 16 21 C -0.02 -1.38 5.49 84.83 0.47 -0.92 16 22 N -0.92 -56.67 13.67 21.61 0.30 -56.37 16 23 Si 1.02 42.44 29.55 68.60 2.03 44.47 16 24 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 25 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 26 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 27 C -0.24 -10.02 9.17 22.39 0.21 -9.81 16 28 C -0.06 -1.79 8.23 22.25 0.18 -1.61 16 29 H 0.07 1.04 7.53 -2.39 -0.02 1.02 16 30 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 0.97 5.79 -2.39 -0.01 0.95 16 33 H 0.10 0.91 6.23 -2.39 -0.01 0.89 16 34 H 0.11 1.82 7.88 -2.39 -0.02 1.80 16 35 H 0.12 2.02 5.23 -2.38 -0.01 2.00 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 0.60 6.56 -2.39 -0.02 0.59 16 39 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 41 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.05 0.67 7.23 -2.38 -0.02 0.65 16 43 H 0.07 1.49 6.11 -2.38 -0.01 1.48 16 44 H 0.05 0.92 6.25 -2.39 -0.01 0.91 16 45 H 0.09 1.68 5.33 -2.38 -0.01 1.67 16 46 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 47 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 48 H 0.27 15.30 8.31 -92.72 -0.77 14.53 16 49 H 0.12 4.94 5.64 -2.91 -0.02 4.92 16 50 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -75.21 384.10 2.43 -72.78 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.96 Total: 25.01 kcal Atomic # 6 Polarization: -34.69 SS G_CDS: 6.06 Total: -28.63 kcal Atomic # 7 Polarization: -75.40 SS G_CDS: -6.35 Total: -81.75 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -0.27 Total: -31.88 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -75.21 2.43 -72.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137116704.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.285 kcal (2) G-P(sol) polarization free energy of solvation -75.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds