Wall clock time and date at job start Wed Apr 1 2020 03:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.33471 * 118.04677 * 2 1 4 4 O 1.21277 * 118.28475 * 357.69002 * 3 2 1 5 5 C 1.50176 * 123.43121 * 177.71370 * 3 2 1 6 6 C 1.53065 * 110.02852 * 17.53769 * 5 3 2 7 7 C 1.53512 * 108.35083 * 311.09525 * 6 5 3 8 8 H 1.08998 * 109.74885 * 188.33296 * 7 6 5 9 9 C 1.53093 * 108.72036 * 308.36720 * 7 6 5 10 10 N 1.46768 * 109.80428 * 176.16661 * 9 7 6 11 11 C 1.46901 * 110.99768 * 173.87558 * 10 9 7 12 12 C 1.50697 * 109.46975 * 170.00317 * 11 10 9 13 13 C 1.38297 * 119.93561 * 89.99546 * 12 11 10 14 14 C 1.38101 * 120.07198 * 180.02562 * 13 12 11 15 15 C 1.38880 * 119.93052 * 0.02562 * 14 13 12 16 16 O 1.35747 * 120.07077 * 179.97438 * 15 14 13 17 17 C 1.34837 * 117.00182 * 5.52923 * 16 15 14 18 18 H 1.08005 * 119.99586 * 354.94796 * 17 16 15 19 19 C 1.38648 * 120.00300 * 174.94167 * 17 16 15 20 20 N 1.31550 * 120.00175 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99863 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47192 * 269.99785 * 21 19 17 23 23 H 1.48502 * 109.47427 * 30.00008 * 21 19 17 24 24 H 1.48502 * 109.47125 * 150.00290 * 21 19 17 25 25 C 1.38877 * 119.85872 * 0.24972 * 15 14 13 26 26 C 1.38100 * 119.93592 * 359.49136 * 25 15 14 27 27 C 1.46915 * 110.98853 * 297.81737 * 10 9 7 28 28 C 1.53126 * 108.37645 * 64.06793 * 27 10 9 29 29 C 1.47680 * 117.62830 * 179.71113 * 2 1 3 30 30 H 1.09007 * 108.48446 * 80.53766 * 29 2 1 31 31 H 1.08994 * 109.47358 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.46710 * 120.00819 * 1 2 3 33 33 H 1.09004 * 109.47181 * 240.00061 * 1 2 3 34 34 H 1.08996 * 109.37978 * 257.36314 * 5 3 2 35 35 H 1.09003 * 109.28256 * 137.64385 * 5 3 2 36 36 H 1.08998 * 109.68703 * 191.37669 * 6 5 3 37 37 H 1.09003 * 109.71871 * 70.82415 * 6 5 3 38 38 H 1.09005 * 109.41576 * 56.06358 * 9 7 6 39 39 H 1.08998 * 109.41548 * 296.27295 * 9 7 6 40 40 H 1.08996 * 109.47788 * 49.99841 * 11 10 9 41 41 H 1.09000 * 109.47113 * 289.99754 * 11 10 9 42 42 H 1.07997 * 119.96505 * 0.04941 * 13 12 11 43 43 H 1.07999 * 120.03507 * 180.02562 * 14 13 12 44 44 H 0.97004 * 120.00071 * 180.02562 * 20 19 17 45 45 H 1.08006 * 120.03540 * 179.72770 * 25 15 14 46 46 H 1.08000 * 119.96907 * 180.23463 * 26 25 15 47 47 H 1.08999 * 109.50921 * 182.51139 * 27 10 9 48 48 H 1.09006 * 109.51084 * 302.65834 * 27 10 9 49 49 H 1.08998 * 108.62538 * 180.02562 * 28 27 10 50 50 H 1.09005 * 111.03322 * 59.65495 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.0926 1.1780 0.0000 4 8 1.4210 2.1869 -0.0430 5 6 3.5868 1.3194 0.0500 6 6 4.2518 -0.0043 -0.3354 7 6 3.5933 -1.1299 0.4745 8 1 4.1447 -2.0589 0.3299 9 6 3.6100 -0.7439 1.9559 10 7 2.9041 -1.7618 2.7430 11 6 3.0284 -1.4942 4.1821 12 6 2.0994 -2.4036 4.9442 13 6 2.5424 -3.6422 5.3710 14 6 1.6932 -4.4780 6.0692 15 6 0.3928 -4.0738 6.3421 16 8 -0.4445 -4.8934 7.0277 17 6 0.0802 -6.0360 7.5146 18 1 1.1006 -6.3034 7.2829 19 6 -0.6902 -6.8677 8.3128 20 7 -0.1782 -7.9823 8.7883 21 14 -2.4553 -6.4054 8.7132 22 1 -2.4849 -5.5960 9.9579 23 1 -3.0256 -5.6134 7.5939 24 1 -3.2586 -7.6394 8.9061 25 6 -0.0508 -2.8318 5.9072 26 6 0.8048 -1.9983 5.2141 27 6 1.4930 -1.8506 2.3440 28 6 1.4315 -2.3263 0.8898 29 6 2.1498 -1.3084 0.0066 30 1 2.1595 -1.6985 -1.0112 31 1 -0.3634 1.0276 -0.0005 32 1 -0.3633 -0.5140 -0.8899 33 1 -0.3634 -0.5138 0.8900 34 1 3.8903 1.5961 1.0596 35 1 3.8983 2.0970 -0.6474 36 1 5.3164 0.0390 -0.1056 37 1 4.1133 -0.1890 -1.4007 38 1 3.1174 0.2199 2.0848 39 1 4.6418 -0.6710 2.2997 40 1 2.7657 -0.4556 4.3826 41 1 4.0555 -1.6766 4.4982 42 1 3.5537 -3.9560 5.1585 43 1 2.0399 -5.4450 6.4025 44 1 -0.7173 -8.5643 9.3465 45 1 -1.0629 -2.5164 6.1140 46 1 0.4615 -1.0307 4.8789 47 1 0.9822 -2.5801 2.9724 48 1 1.0201 -0.8752 2.4592 49 1 0.3859 -2.3931 0.5893 50 1 1.9042 -3.3020 0.7770 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137123996.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:58 Heat of formation + Delta-G solvation = -23.611556 kcal Electronic energy + Delta-G solvation = -30849.752268 eV Core-core repulsion = 26842.619004 eV Total energy + Delta-G solvation = -4007.133264 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.39581 -39.46135 -38.58475 -37.08298 -35.40514 -34.95311 -32.51271 -32.05490 -30.35074 -30.07752 -29.24624 -27.37869 -26.28536 -24.93603 -24.87649 -22.93368 -22.24785 -21.76410 -21.04657 -20.15288 -18.04748 -17.82480 -17.28310 -16.95288 -16.54036 -16.34892 -16.10308 -15.47678 -15.03405 -14.52138 -14.44860 -14.20416 -14.16665 -13.88309 -13.80966 -13.77098 -13.40875 -13.34026 -12.92432 -12.76516 -12.68566 -12.52246 -12.40638 -12.24105 -12.20963 -11.84318 -11.60789 -11.38666 -11.25442 -11.10137 -10.98422 -10.81480 -10.73211 -10.58459 -10.49525 -10.18266 -9.87380 -9.42769 -8.95772 -8.90414 -8.33561 -8.29530 -7.35153 -6.45810 -4.12524 2.06045 2.11657 2.40220 2.71432 3.18823 3.22826 3.36928 3.83748 4.15143 4.18951 4.19890 4.32197 4.39103 4.51104 4.78293 4.80242 4.83263 4.94061 4.95478 5.06421 5.10011 5.19382 5.20059 5.23119 5.26516 5.33924 5.38848 5.42002 5.49333 5.52289 5.60242 5.65385 5.66379 5.68128 5.76107 5.77922 5.81062 5.95998 6.06383 6.08878 6.19537 6.29652 6.51130 6.73653 6.91834 7.00374 7.11313 7.19021 7.21083 7.27991 7.55930 7.75686 7.91936 7.99219 8.89344 9.51232 10.61697 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021810 B = 0.002376 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.528559 B =11779.597433 C =12268.325732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.599 5.599 3 C 0.518 3.482 4 O -0.561 6.561 5 C -0.137 4.137 6 C -0.118 4.118 7 C -0.095 4.095 8 H 0.102 0.898 9 C 0.056 3.944 10 N -0.529 5.529 11 C 0.112 3.888 12 C -0.178 4.178 13 C -0.050 4.050 14 C -0.223 4.223 15 C 0.162 3.838 16 O -0.217 6.217 17 C -0.390 4.390 18 H 0.107 0.893 19 C 0.064 3.936 20 N -0.878 5.878 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.260 1.260 24 H -0.282 1.282 25 C -0.193 4.193 26 C -0.070 4.070 27 C 0.050 3.950 28 C -0.124 4.124 29 C 0.148 3.852 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.033 0.967 39 H 0.077 0.923 40 H 0.031 0.969 41 H 0.076 0.924 42 H 0.111 0.889 43 H 0.133 0.867 44 H 0.280 0.720 45 H 0.116 0.884 46 H 0.107 0.893 47 H 0.093 0.907 48 H 0.034 0.966 49 H 0.072 0.928 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.213 14.000 -18.401 24.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.333 5.333 3 C 0.307 3.693 4 O -0.441 6.441 5 C -0.176 4.176 6 C -0.156 4.156 7 C -0.114 4.114 8 H 0.120 0.880 9 C -0.072 4.072 10 N -0.254 5.254 11 C -0.014 4.014 12 C -0.179 4.179 13 C -0.069 4.069 14 C -0.242 4.242 15 C 0.110 3.890 16 O -0.121 6.121 17 C -0.465 4.465 18 H 0.124 0.876 19 C -0.140 4.140 20 N -0.516 5.516 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.184 1.184 24 H -0.207 1.207 25 C -0.212 4.212 26 C -0.089 4.089 27 C -0.077 4.077 28 C -0.162 4.162 29 C 0.045 3.955 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.051 0.949 39 H 0.096 0.904 40 H 0.049 0.951 41 H 0.095 0.905 42 H 0.129 0.871 43 H 0.150 0.850 44 H 0.090 0.910 45 H 0.134 0.866 46 H 0.125 0.875 47 H 0.111 0.889 48 H 0.052 0.948 49 H 0.091 0.909 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.828 13.871 -18.321 24.276 hybrid contribution -1.013 0.609 0.497 1.282 sum 6.815 14.480 -17.823 23.954 Atomic orbital electron populations 1.21798 0.80018 1.04405 1.01564 1.47744 1.07368 1.05791 1.72356 1.20144 0.90945 0.82653 0.75584 1.90699 1.66630 1.35608 1.51154 1.21701 0.91235 0.99833 1.04873 1.21721 1.00428 0.93089 1.00329 1.21511 0.94727 1.00232 0.94917 0.88031 1.22200 0.99408 0.93114 0.92523 1.62172 1.12902 1.46346 1.03956 1.20818 0.98941 0.95861 0.85807 1.19128 0.95081 0.97069 1.06650 1.20621 0.98442 0.92601 0.95197 1.21284 0.94487 1.02295 1.06114 1.19132 0.89234 0.89579 0.91074 1.83571 1.36218 1.30498 1.61849 1.20773 1.00704 0.95020 1.30028 0.87562 1.24466 0.99882 0.94558 0.95055 1.69642 1.37770 1.11280 1.32898 0.86188 0.82860 0.78155 0.79740 1.19878 1.18371 1.20749 1.20158 1.00641 0.93599 1.06852 1.20495 0.92954 0.97962 0.97498 1.22269 0.89288 1.00471 0.95712 1.21888 1.00930 0.98637 0.94748 1.21246 0.91920 0.82624 0.99718 0.91082 0.89317 0.92250 0.91746 0.88146 0.88370 0.90082 0.90878 0.94911 0.90448 0.95076 0.90548 0.87090 0.84956 0.91001 0.86641 0.87506 0.88898 0.94798 0.90895 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.61 9.36 59.85 0.56 1.17 16 2 N -0.60 -5.78 2.71 -173.93 -0.47 -6.25 16 3 C 0.52 5.76 6.64 -11.82 -0.08 5.68 16 4 O -0.56 -8.45 15.97 5.56 0.09 -8.36 16 5 C -0.14 -1.04 5.37 -28.10 -0.15 -1.19 16 6 C -0.12 -0.67 5.68 -26.43 -0.15 -0.82 16 7 C -0.09 -0.67 2.76 -90.42 -0.25 -0.92 16 8 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 9 C 0.06 0.49 4.10 -3.85 -0.02 0.48 16 10 N -0.53 -5.87 4.78 -236.03 -1.13 -7.00 16 11 C 0.11 1.39 5.42 -4.98 -0.03 1.36 16 12 C -0.18 -2.74 4.15 -104.58 -0.43 -3.17 16 13 C -0.05 -0.85 9.69 -39.61 -0.38 -1.24 16 14 C -0.22 -4.60 9.17 -39.39 -0.36 -4.96 16 15 C 0.16 3.61 6.65 -39.11 -0.26 3.35 16 16 O -0.22 -5.59 8.59 0.04 0.00 -5.59 16 17 C -0.39 -10.77 9.95 30.88 0.31 -10.46 16 18 H 0.11 3.00 5.44 -52.48 -0.29 2.71 16 19 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 20 N -0.88 -25.02 13.96 55.48 0.77 -24.25 16 21 Si 0.91 21.37 28.62 -169.99 -4.86 16.51 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 23 H -0.26 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 C -0.19 -3.67 9.99 -39.40 -0.39 -4.06 16 26 C -0.07 -1.13 7.76 -39.61 -0.31 -1.43 16 27 C 0.05 0.57 4.25 -3.75 -0.02 0.55 16 28 C -0.12 -1.11 5.16 -26.81 -0.14 -1.24 16 29 C 0.15 1.17 2.75 -67.54 -0.19 0.99 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.98 6.61 -51.93 -0.34 0.63 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.58 6.03 -51.93 -0.31 0.27 16 34 H 0.10 0.73 6.81 -51.93 -0.35 0.38 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.38 8.13 -51.93 -0.42 -0.04 16 38 H 0.03 0.33 5.49 -51.93 -0.28 0.04 16 39 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 40 H 0.03 0.38 8.02 -51.93 -0.42 -0.04 16 41 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 42 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 43 H 0.13 2.91 5.64 -52.49 -0.30 2.61 16 44 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.12 2.07 8.06 -52.48 -0.42 1.65 16 46 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 47 H 0.09 1.28 5.59 -51.93 -0.29 0.99 16 48 H 0.03 0.41 6.95 -51.93 -0.36 0.05 16 49 H 0.07 0.61 6.80 -51.93 -0.35 0.25 16 50 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 379.31 15.07 5.72 5.72 Total: -1.00 -30.98 379.31 -9.76 -40.75 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.50 Total: 2.74 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -2.38 Total: -14.26 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: -0.82 Total: -37.50 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.09 Total: -13.95 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.86 Total: 16.51 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.98 -9.76 -40.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137123996.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.135 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds