Wall clock time and date at job start Wed Apr 1 2020 03:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.33471 * 118.04677 * 2 1 4 4 O 1.21277 * 118.28475 * 357.69002 * 3 2 1 5 5 C 1.50176 * 123.43121 * 177.71370 * 3 2 1 6 6 C 1.53065 * 110.02852 * 17.53769 * 5 3 2 7 7 C 1.53512 * 108.35083 * 311.09525 * 6 5 3 8 8 H 1.08998 * 109.74885 * 188.33296 * 7 6 5 9 9 C 1.53093 * 108.72036 * 308.36720 * 7 6 5 10 10 N 1.46768 * 109.80428 * 176.16661 * 9 7 6 11 11 C 1.46901 * 110.99768 * 173.87558 * 10 9 7 12 12 C 1.50697 * 109.46975 * 170.00317 * 11 10 9 13 13 C 1.38297 * 119.93561 * 89.99546 * 12 11 10 14 14 C 1.38101 * 120.07198 * 180.02562 * 13 12 11 15 15 C 1.38880 * 119.93052 * 0.02562 * 14 13 12 16 16 O 1.35747 * 120.07077 * 179.97438 * 15 14 13 17 17 C 1.34837 * 117.00182 * 5.52923 * 16 15 14 18 18 H 1.08005 * 119.99586 * 354.94796 * 17 16 15 19 19 C 1.38648 * 120.00300 * 174.94167 * 17 16 15 20 20 N 1.31550 * 120.00175 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99863 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47192 * 269.99785 * 21 19 17 23 23 H 1.48502 * 109.47427 * 30.00008 * 21 19 17 24 24 H 1.48502 * 109.47125 * 150.00290 * 21 19 17 25 25 C 1.38877 * 119.85872 * 0.24972 * 15 14 13 26 26 C 1.38100 * 119.93592 * 359.49136 * 25 15 14 27 27 C 1.46915 * 110.98853 * 297.81737 * 10 9 7 28 28 C 1.53126 * 108.37645 * 64.06793 * 27 10 9 29 29 C 1.47680 * 117.62830 * 179.71113 * 2 1 3 30 30 H 1.09007 * 108.48446 * 80.53766 * 29 2 1 31 31 H 1.08994 * 109.47358 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.46710 * 120.00819 * 1 2 3 33 33 H 1.09004 * 109.47181 * 240.00061 * 1 2 3 34 34 H 1.08996 * 109.37978 * 257.36314 * 5 3 2 35 35 H 1.09003 * 109.28256 * 137.64385 * 5 3 2 36 36 H 1.08998 * 109.68703 * 191.37669 * 6 5 3 37 37 H 1.09003 * 109.71871 * 70.82415 * 6 5 3 38 38 H 1.09005 * 109.41576 * 56.06358 * 9 7 6 39 39 H 1.08998 * 109.41548 * 296.27295 * 9 7 6 40 40 H 1.08996 * 109.47788 * 49.99841 * 11 10 9 41 41 H 1.09000 * 109.47113 * 289.99754 * 11 10 9 42 42 H 1.07997 * 119.96505 * 0.04941 * 13 12 11 43 43 H 1.07999 * 120.03507 * 180.02562 * 14 13 12 44 44 H 0.97004 * 120.00071 * 180.02562 * 20 19 17 45 45 H 1.08006 * 120.03540 * 179.72770 * 25 15 14 46 46 H 1.08000 * 119.96907 * 180.23463 * 26 25 15 47 47 H 1.08999 * 109.50921 * 182.51139 * 27 10 9 48 48 H 1.09006 * 109.51084 * 302.65834 * 27 10 9 49 49 H 1.08998 * 108.62538 * 180.02562 * 28 27 10 50 50 H 1.09005 * 111.03322 * 59.65495 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.0926 1.1780 0.0000 4 8 1.4210 2.1869 -0.0430 5 6 3.5868 1.3194 0.0500 6 6 4.2518 -0.0043 -0.3354 7 6 3.5933 -1.1299 0.4745 8 1 4.1447 -2.0589 0.3299 9 6 3.6100 -0.7439 1.9559 10 7 2.9041 -1.7618 2.7430 11 6 3.0284 -1.4942 4.1821 12 6 2.0994 -2.4036 4.9442 13 6 2.5424 -3.6422 5.3710 14 6 1.6932 -4.4780 6.0692 15 6 0.3928 -4.0738 6.3421 16 8 -0.4445 -4.8934 7.0277 17 6 0.0802 -6.0360 7.5146 18 1 1.1006 -6.3034 7.2829 19 6 -0.6902 -6.8677 8.3128 20 7 -0.1782 -7.9823 8.7883 21 14 -2.4553 -6.4054 8.7132 22 1 -2.4849 -5.5960 9.9579 23 1 -3.0256 -5.6134 7.5939 24 1 -3.2586 -7.6394 8.9061 25 6 -0.0508 -2.8318 5.9072 26 6 0.8048 -1.9983 5.2141 27 6 1.4930 -1.8506 2.3440 28 6 1.4315 -2.3263 0.8898 29 6 2.1498 -1.3084 0.0066 30 1 2.1595 -1.6985 -1.0112 31 1 -0.3634 1.0276 -0.0005 32 1 -0.3633 -0.5140 -0.8899 33 1 -0.3634 -0.5138 0.8900 34 1 3.8903 1.5961 1.0596 35 1 3.8983 2.0970 -0.6474 36 1 5.3164 0.0390 -0.1056 37 1 4.1133 -0.1890 -1.4007 38 1 3.1174 0.2199 2.0848 39 1 4.6418 -0.6710 2.2997 40 1 2.7657 -0.4556 4.3826 41 1 4.0555 -1.6766 4.4982 42 1 3.5537 -3.9560 5.1585 43 1 2.0399 -5.4450 6.4025 44 1 -0.7173 -8.5643 9.3465 45 1 -1.0629 -2.5164 6.1140 46 1 0.4615 -1.0307 4.8789 47 1 0.9822 -2.5801 2.9724 48 1 1.0201 -0.8752 2.4592 49 1 0.3859 -2.3931 0.5893 50 1 1.9042 -3.3020 0.7770 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137123996.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:57 Heat of formation + Delta-G solvation = -42.937469 kcal Electronic energy + Delta-G solvation = -30850.590303 eV Core-core repulsion = 26842.619004 eV Total energy + Delta-G solvation = -4007.971299 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.14306 -40.97734 -39.67991 -38.46621 -36.45859 -35.59125 -34.46657 -33.04940 -31.85529 -31.19420 -30.10461 -28.13588 -27.76091 -26.38814 -25.60189 -23.95046 -23.67639 -22.56869 -22.03822 -21.36731 -19.83026 -19.08541 -18.59356 -17.72762 -17.28542 -17.13787 -16.89056 -16.70126 -16.57055 -15.91098 -15.71447 -15.55271 -15.24016 -15.06081 -14.95669 -14.75522 -14.43421 -14.29297 -14.20341 -14.08164 -13.90748 -13.67164 -13.43030 -13.19258 -13.06089 -12.92436 -12.85262 -12.54410 -12.42850 -12.27040 -12.17441 -11.97829 -11.92472 -11.70234 -11.37919 -11.34659 -11.26856 -10.89960 -10.65924 -9.81136 -9.71775 -9.28128 -8.91802 -8.50266 -6.22560 0.54864 0.60952 1.30956 1.34491 1.50961 1.59584 2.00268 2.27248 2.68766 2.96164 3.10660 3.26814 3.52059 3.58917 3.67193 3.82807 3.94930 4.04125 4.14825 4.17377 4.17642 4.33837 4.36802 4.39633 4.45071 4.47836 4.54160 4.56743 4.63118 4.65278 4.74322 4.79528 4.85649 4.88985 4.91126 4.94018 4.97623 5.02752 5.17881 5.20134 5.22316 5.23450 5.27899 5.37142 5.46739 5.56260 5.74873 5.81515 5.90218 6.11124 6.18487 6.26458 6.44417 6.84335 7.12615 7.58823 8.61288 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021810 B = 0.002376 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.528559 B =11779.597433 C =12268.325732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.597 5.597 3 C 0.509 3.491 4 O -0.611 6.611 5 C -0.133 4.133 6 C -0.107 4.107 7 C -0.091 4.091 8 H 0.116 0.884 9 C 0.056 3.944 10 N -0.531 5.531 11 C 0.113 3.887 12 C -0.148 4.148 13 C -0.049 4.049 14 C -0.235 4.235 15 C 0.123 3.877 16 O -0.246 6.246 17 C -0.398 4.398 18 H 0.083 0.917 19 C 0.011 3.989 20 N -0.923 5.923 21 Si 0.969 3.031 22 H -0.267 1.267 23 H -0.263 1.263 24 H -0.267 1.267 25 C -0.192 4.192 26 C -0.062 4.062 27 C 0.054 3.946 28 C -0.120 4.120 29 C 0.147 3.853 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.022 0.978 39 H 0.094 0.906 40 H 0.040 0.960 41 H 0.093 0.907 42 H 0.136 0.864 43 H 0.108 0.892 44 H 0.285 0.715 45 H 0.124 0.876 46 H 0.136 0.864 47 H 0.065 0.935 48 H 0.025 0.975 49 H 0.076 0.924 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.743 15.913 -20.642 27.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.329 5.329 3 C 0.299 3.701 4 O -0.494 6.494 5 C -0.173 4.173 6 C -0.145 4.145 7 C -0.110 4.110 8 H 0.134 0.866 9 C -0.072 4.072 10 N -0.256 5.256 11 C -0.014 4.014 12 C -0.148 4.148 13 C -0.068 4.068 14 C -0.254 4.254 15 C 0.074 3.926 16 O -0.154 6.154 17 C -0.474 4.474 18 H 0.100 0.900 19 C -0.188 4.188 20 N -0.563 5.563 21 Si 0.791 3.209 22 H -0.192 1.192 23 H -0.188 1.188 24 H -0.192 1.192 25 C -0.211 4.211 26 C -0.080 4.080 27 C -0.074 4.074 28 C -0.158 4.158 29 C 0.045 3.955 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.101 0.899 38 H 0.041 0.959 39 H 0.113 0.887 40 H 0.058 0.942 41 H 0.112 0.888 42 H 0.154 0.846 43 H 0.126 0.874 44 H 0.094 0.906 45 H 0.142 0.858 46 H 0.154 0.846 47 H 0.084 0.916 48 H 0.043 0.957 49 H 0.095 0.905 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.393 15.789 -20.594 27.597 hybrid contribution -1.303 0.257 0.976 1.648 sum 8.090 16.046 -19.618 26.604 Atomic orbital electron populations 1.21788 0.80336 1.03287 1.02478 1.47875 1.07457 1.06265 1.71301 1.20841 0.92367 0.82208 0.74669 1.90678 1.67953 1.37247 1.53572 1.21735 0.88663 1.01438 1.05452 1.21704 1.01279 0.90943 1.00566 1.21544 0.94205 1.01478 0.93757 0.86617 1.22301 0.99740 0.91799 0.93346 1.62195 1.12731 1.47423 1.03203 1.20856 0.98837 0.95213 0.86467 1.19562 0.95128 0.96281 1.03876 1.20865 0.99025 0.92641 0.94233 1.21284 0.94822 1.02148 1.07195 1.19635 0.90000 0.90699 0.92269 1.83516 1.37073 1.30567 1.64196 1.20708 1.00040 0.96178 1.30471 0.89985 1.25250 1.03891 0.94536 0.95095 1.69724 1.39442 1.12566 1.34615 0.85245 0.78101 0.78244 0.79293 1.19209 1.18766 1.19207 1.20413 1.01629 0.92601 1.06474 1.20822 0.92759 0.98473 0.95975 1.22175 0.89240 0.99147 0.96867 1.21857 1.01598 0.99085 0.93285 1.21391 0.92219 0.81363 1.00557 0.89150 0.91439 0.90496 0.91616 0.87676 0.87678 0.87732 0.89895 0.95946 0.88729 0.94222 0.88836 0.84579 0.87401 0.90581 0.85817 0.84618 0.91614 0.95685 0.90509 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.12 9.36 127.77 1.20 2.32 16 2 N -0.60 -10.22 2.71 -823.32 -2.23 -12.44 16 3 C 0.51 10.43 6.64 87.70 0.58 11.01 16 4 O -0.61 -18.23 15.97 -3.02 -0.05 -18.27 16 5 C -0.13 -1.62 5.37 29.71 0.16 -1.46 16 6 C -0.11 -0.72 5.68 30.79 0.17 -0.55 16 7 C -0.09 -0.89 2.76 -10.66 -0.03 -0.92 16 8 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 9 C 0.06 0.75 4.10 86.36 0.35 1.10 16 10 N -0.53 -9.83 4.78 -900.66 -4.30 -14.13 16 11 C 0.11 2.35 5.42 85.56 0.46 2.82 16 12 C -0.15 -4.15 4.15 -19.83 -0.08 -4.24 16 13 C -0.05 -1.61 9.69 22.25 0.22 -1.40 16 14 C -0.24 -10.03 9.17 22.39 0.21 -9.82 16 15 C 0.12 5.65 6.65 22.58 0.15 5.80 16 16 O -0.25 -13.26 8.59 -22.77 -0.20 -13.46 16 17 C -0.40 -23.25 9.95 67.92 0.68 -22.58 16 18 H 0.08 5.01 5.44 -2.91 -0.02 5.00 16 19 C 0.01 0.62 5.49 84.83 0.47 1.08 16 20 N -0.92 -54.86 13.96 21.61 0.30 -54.56 16 21 Si 0.97 45.31 28.62 68.60 1.96 47.27 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 23 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 C -0.19 -7.20 9.99 22.39 0.22 -6.98 16 26 C -0.06 -1.85 7.76 22.25 0.17 -1.68 16 27 C 0.05 1.08 4.25 86.34 0.37 1.45 16 28 C -0.12 -1.81 5.16 30.54 0.16 -1.65 16 29 C 0.15 1.82 2.75 44.60 0.12 1.94 16 30 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.07 1.49 6.61 -2.39 -0.02 1.48 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.11 6.03 -2.39 -0.01 1.10 16 34 H 0.11 1.20 6.81 -2.39 -0.02 1.18 16 35 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.08 0.47 8.13 -2.39 -0.02 0.45 16 38 H 0.02 0.37 5.49 -2.38 -0.01 0.35 16 39 H 0.09 1.01 8.12 -2.39 -0.02 0.99 16 40 H 0.04 0.80 8.02 -2.39 -0.02 0.78 16 41 H 0.09 1.72 8.08 -2.39 -0.02 1.70 16 42 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 43 H 0.11 5.10 5.64 -2.91 -0.02 5.08 16 44 H 0.28 15.52 8.31 -92.71 -0.77 14.74 16 45 H 0.12 4.38 8.06 -2.91 -0.02 4.35 16 46 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 47 H 0.07 1.68 5.59 -2.39 -0.01 1.67 16 48 H 0.02 0.55 6.95 -2.38 -0.02 0.53 16 49 H 0.08 1.10 6.80 -2.39 -0.02 1.09 16 50 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -72.08 379.31 2.01 -70.07 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.95 Total: 19.28 kcal Atomic # 6 Polarization: -29.34 SS G_CDS: 5.57 Total: -23.76 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: -6.23 Total: -81.13 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.24 Total: -31.73 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.96 Total: 47.27 kcal Total: -72.08 2.01 -70.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137123996.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.129 kcal (2) G-P(sol) polarization free energy of solvation -72.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds