Wall clock time and date at job start Wed Apr 1 2020 03:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21285 * 120.00408 * 2 1 4 4 N 1.34779 * 120.00129 * 180.02562 * 2 1 3 5 5 C 1.46495 * 120.00558 * 180.02562 * 4 2 1 6 6 C 1.52993 * 109.47572 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47495 * 180.02562 * 6 5 4 8 8 C 1.29819 * 118.55551 * 95.00357 * 7 6 5 9 9 C 1.50144 * 123.28548 * 180.39895 * 8 7 6 10 10 N 1.46847 * 110.27572 * 342.92373 * 9 8 7 11 11 C 1.46900 * 110.99942 * 174.31319 * 10 9 8 12 12 C 1.50702 * 109.47036 * 66.04741 * 11 10 9 13 13 C 1.38311 * 119.92915 * 89.99553 * 12 11 10 14 14 C 1.38096 * 120.06782 * 180.02562 * 13 12 11 15 15 C 1.38883 * 119.93001 * 359.97438 * 14 13 12 16 16 O 1.35752 * 120.06733 * 179.72546 * 15 14 13 17 17 C 1.34835 * 116.99867 * 174.45565 * 16 15 14 18 18 H 1.08001 * 119.99908 * 5.03572 * 17 16 15 19 19 C 1.38654 * 119.99862 * 185.04415 * 17 16 15 20 20 N 1.31552 * 120.00015 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00013 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47583 * 89.99816 * 21 19 17 23 23 H 1.48496 * 109.47072 * 210.00091 * 21 19 17 24 24 H 1.48500 * 109.47137 * 329.99829 * 21 19 17 25 25 C 1.38878 * 119.86281 * 0.02562 * 15 14 13 26 26 C 1.38100 * 119.93217 * 359.97321 * 25 15 14 27 27 C 1.47241 * 110.20301 * 50.92691 * 10 9 8 28 28 C 1.50309 * 118.55264 * 275.02770 * 7 6 5 29 29 H 1.08995 * 109.47230 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47111 * 300.00181 * 1 2 3 31 31 H 1.09006 * 109.47152 * 59.99577 * 1 2 3 32 32 H 0.97000 * 119.99401 * 359.97438 * 4 2 1 33 33 H 1.09011 * 109.47102 * 59.99575 * 5 4 2 34 34 H 1.09002 * 109.47009 * 299.99999 * 5 4 2 35 35 H 1.09008 * 109.46857 * 60.00470 * 6 5 4 36 36 H 1.09002 * 109.47411 * 300.00315 * 6 5 4 37 37 H 1.08003 * 118.35604 * 0.37059 * 8 7 6 38 38 H 1.09001 * 109.33753 * 222.67915 * 9 8 7 39 39 H 1.09004 * 109.33710 * 103.16907 * 9 8 7 40 40 H 1.08992 * 109.47390 * 306.04832 * 11 10 9 41 41 H 1.08999 * 109.46842 * 186.04180 * 11 10 9 42 42 H 1.08001 * 119.96634 * 0.02562 * 13 12 11 43 43 H 1.07998 * 120.03699 * 179.97438 * 14 13 12 44 44 H 0.96998 * 120.00173 * 179.97438 * 20 19 17 45 45 H 1.08007 * 120.03391 * 179.97438 * 25 15 14 46 46 H 1.08001 * 119.96661 * 180.02562 * 26 25 15 47 47 H 1.09003 * 109.63454 * 50.89257 * 27 10 9 48 48 H 1.09000 * 109.63707 * 171.50009 * 27 10 9 49 49 H 1.09005 * 109.42972 * 283.57540 * 28 7 6 50 50 H 1.08999 * 109.43583 * 43.42381 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6458 -1.1673 0.0000 6 6 4.1558 -2.6097 -0.0001 7 6 5.6628 -2.6098 0.0011 8 6 6.2824 -2.7097 1.1375 9 6 7.7786 -2.7120 1.2629 10 7 8.3978 -2.9956 -0.0381 11 6 9.8595 -2.8691 0.0358 12 6 10.4117 -3.9430 0.9374 13 6 10.7756 -5.1681 0.4087 14 6 11.2814 -6.1544 1.2323 15 6 11.4251 -5.9149 2.5928 16 8 11.9168 -6.8844 3.4059 17 6 12.1384 -6.5495 4.6931 18 1 11.8498 -5.5735 5.0545 19 6 12.7368 -7.4581 5.5526 20 7 12.9535 -7.1312 6.8083 21 14 13.2354 -9.1463 4.9275 22 1 14.6278 -9.0928 4.4140 23 1 13.1549 -10.1290 6.0380 24 1 12.3200 -9.5594 3.8337 25 6 11.0588 -4.6836 3.1206 26 6 10.5536 -3.7013 2.2917 27 6 7.8426 -2.1047 -1.0706 28 6 6.3823 -2.4937 -1.3134 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6958 -2.0072 -0.0005 33 1 4.0089 -0.6540 0.8906 34 1 4.0095 -0.6529 -0.8895 35 1 3.7928 -3.1233 -0.8904 36 1 3.7921 -3.1238 0.8896 37 1 5.6920 -2.7951 2.0379 38 1 8.0796 -3.4757 1.9800 39 1 8.1126 -1.7365 1.6166 40 1 10.1196 -1.8893 0.4362 41 1 10.2845 -2.9784 -0.9620 42 1 10.6640 -5.3537 -0.6494 43 1 11.5650 -7.1111 0.8190 44 1 13.3718 -7.7670 7.4098 45 1 11.1689 -4.4945 4.1783 46 1 10.2689 -2.7435 2.7015 47 1 7.8936 -1.0710 -0.7284 48 1 8.4101 -2.2162 -1.9945 49 1 6.3440 -3.4509 -1.8336 50 1 5.9004 -1.7304 -1.9244 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158996625.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:35 Heat of formation + Delta-G solvation = -26.209639 kcal Electronic energy + Delta-G solvation = -28606.816867 eV Core-core repulsion = 24599.570941 eV Total energy + Delta-G solvation = -4007.245926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.03459 -39.59884 -38.89476 -37.00559 -35.92634 -34.20131 -32.42040 -31.45282 -31.01479 -30.21780 -30.04194 -28.52766 -26.00631 -25.05709 -23.59296 -23.33210 -22.03868 -21.76622 -21.01217 -20.30684 -17.92442 -17.72751 -17.25111 -17.18609 -16.60727 -16.13544 -15.88897 -15.44704 -15.05864 -14.79601 -14.65338 -14.22351 -13.98441 -13.94927 -13.84515 -13.57767 -13.45755 -13.31006 -13.03386 -12.82655 -12.73568 -12.60340 -12.52066 -12.33489 -12.19758 -12.08904 -11.71596 -11.47079 -11.31672 -11.24188 -10.81812 -10.68404 -10.59305 -10.55033 -10.25965 -10.14716 -9.50257 -9.39013 -8.97163 -8.87585 -8.32937 -8.21189 -7.31099 -6.42355 -4.08952 2.00716 2.13527 2.18307 2.24967 2.85494 3.21376 3.25171 3.39937 3.93885 4.23126 4.36356 4.46701 4.55130 4.58041 4.62648 4.77737 4.83837 4.86939 4.94866 5.04793 5.09961 5.10317 5.20320 5.24732 5.29554 5.34471 5.41266 5.46967 5.51122 5.56239 5.66783 5.67906 5.72859 5.75221 5.83322 5.91752 5.96956 6.01808 6.13105 6.30805 6.35103 6.57819 6.77520 6.79531 6.96863 7.06561 7.10985 7.15222 7.26339 7.32523 7.61515 7.79523 7.81458 8.03378 8.93048 9.55803 10.65288 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017679 B = 0.001748 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.376244 B =16018.086092 C =16836.214484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.507 3.493 3 O -0.548 6.548 4 N -0.732 5.732 5 C 0.122 3.878 6 C -0.094 4.094 7 C -0.124 4.124 8 C -0.139 4.139 9 C 0.080 3.920 10 N -0.526 5.526 11 C 0.110 3.890 12 C -0.171 4.171 13 C -0.054 4.054 14 C -0.194 4.194 15 C 0.161 3.839 16 O -0.218 6.218 17 C -0.389 4.389 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.880 5.880 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.260 1.260 25 C -0.221 4.221 26 C -0.067 4.067 27 C 0.050 3.950 28 C -0.075 4.075 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.401 0.599 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.043 0.957 40 H 0.034 0.966 41 H 0.076 0.924 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.279 0.721 45 H 0.132 0.868 46 H 0.105 0.895 47 H 0.034 0.966 48 H 0.077 0.923 49 H 0.080 0.920 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.514 10.244 -16.371 28.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.294 3.706 3 O -0.426 6.426 4 N -0.385 5.385 5 C -0.001 4.001 6 C -0.131 4.131 7 C -0.125 4.125 8 C -0.158 4.158 9 C -0.047 4.047 10 N -0.250 5.250 11 C -0.016 4.016 12 C -0.172 4.172 13 C -0.073 4.073 14 C -0.213 4.213 15 C 0.109 3.891 16 O -0.123 6.123 17 C -0.465 4.465 18 H 0.123 0.877 19 C -0.140 4.140 20 N -0.518 5.518 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.240 4.240 26 C -0.086 4.086 27 C -0.078 4.078 28 C -0.112 4.112 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.235 0.765 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.127 0.873 38 H 0.113 0.887 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.094 0.906 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.089 0.911 45 H 0.149 0.851 46 H 0.123 0.877 47 H 0.053 0.947 48 H 0.095 0.905 49 H 0.098 0.902 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.034 10.213 -16.315 27.783 hybrid contribution 0.177 -0.296 0.396 0.525 sum -19.857 9.917 -15.919 27.315 Atomic orbital electron populations 1.21852 0.91626 1.04226 1.05377 1.20851 0.90670 0.83488 0.75543 1.90745 1.70814 1.31464 1.49554 1.46197 1.07715 1.08814 1.75731 1.21370 0.79056 0.97021 1.02703 1.20855 0.93499 0.95569 1.03209 1.20615 0.93656 1.02789 0.95395 1.22186 0.95854 1.00268 0.97469 1.21024 0.91186 1.00264 0.92222 1.62494 1.04884 1.52292 1.05362 1.20851 0.86184 0.95629 0.98964 1.19130 1.08230 0.96096 0.93756 1.20447 0.96492 0.92066 0.98291 1.20211 1.09431 1.00658 0.91011 1.19143 0.92058 0.87865 0.90037 1.83576 1.72632 1.34624 1.21469 1.20764 1.40652 1.03671 0.81408 0.87663 1.24465 0.95628 0.99513 0.94396 1.69643 1.41567 1.36735 1.03819 0.86182 0.79707 0.82155 0.78865 1.19898 1.20799 1.18360 1.21235 1.07413 0.94335 1.01059 1.20648 0.97495 0.97771 0.92713 1.22184 0.95359 0.94331 0.95959 1.20438 0.93971 1.02020 0.94755 0.90557 0.88699 0.88736 0.76454 0.91360 0.91354 0.90639 0.90730 0.87274 0.88660 0.93895 0.94789 0.90603 0.86917 0.86607 0.91065 0.85054 0.87698 0.94741 0.90497 0.90201 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.69 10.39 36.00 0.37 -0.31 16 2 C 0.51 4.21 7.94 -10.99 -0.09 4.12 16 3 O -0.55 -7.33 17.10 5.55 0.09 -7.24 16 4 N -0.73 -4.61 5.56 -60.30 -0.33 -4.95 16 5 C 0.12 0.94 5.66 -4.05 -0.02 0.92 16 6 C -0.09 -0.63 5.38 -27.89 -0.15 -0.78 16 7 C -0.12 -1.14 5.15 -100.92 -0.52 -1.65 16 8 C -0.14 -1.48 9.50 -35.96 -0.34 -1.83 16 9 C 0.08 0.99 5.04 -5.27 -0.03 0.96 16 10 N -0.53 -6.47 4.71 -237.57 -1.12 -7.59 16 11 C 0.11 1.42 5.11 -4.97 -0.03 1.39 16 12 C -0.17 -2.75 4.88 -104.57 -0.51 -3.26 16 13 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 14 C -0.19 -3.81 9.99 -39.39 -0.39 -4.20 16 15 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 16 O -0.22 -5.74 8.59 0.03 0.00 -5.74 16 17 C -0.39 -10.93 9.95 30.89 0.31 -10.63 16 18 H 0.11 3.02 5.44 -52.49 -0.29 2.73 16 19 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 20 N -0.88 -25.33 13.96 55.48 0.77 -24.56 16 21 Si 0.91 21.64 28.62 -169.99 -4.86 16.78 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 25 C -0.22 -4.69 9.17 -39.39 -0.36 -5.05 16 26 C -0.07 -1.18 8.09 -39.61 -0.32 -1.50 16 27 C 0.05 0.49 5.59 -3.61 -0.02 0.47 16 28 C -0.07 -0.65 6.04 -28.04 -0.17 -0.82 16 29 H 0.08 0.11 7.91 -51.93 -0.41 -0.30 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.40 1.30 8.31 -40.82 -0.34 0.96 16 33 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.43 8.13 -51.92 -0.42 0.01 16 36 H 0.07 0.47 7.85 -51.93 -0.41 0.07 16 37 H 0.11 1.06 7.81 -52.48 -0.41 0.65 16 38 H 0.10 1.36 6.52 -51.93 -0.34 1.03 16 39 H 0.04 0.52 8.06 -51.93 -0.42 0.10 16 40 H 0.03 0.42 8.00 -51.93 -0.42 0.01 16 41 H 0.08 0.88 7.88 -51.93 -0.41 0.47 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.12 2.14 8.06 -52.49 -0.42 1.71 16 44 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.13 2.95 5.64 -52.48 -0.30 2.65 16 46 H 0.10 1.61 8.03 -52.49 -0.42 1.19 16 47 H 0.03 0.34 8.08 -51.93 -0.42 -0.07 16 48 H 0.08 0.68 7.92 -51.93 -0.41 0.27 16 49 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 408.40 15.07 6.15 6.15 Total: -1.00 -32.87 408.40 -10.22 -43.09 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.92 Total: 2.41 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -3.01 Total: -18.36 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.68 Total: -37.09 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.10 Total: -12.98 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.86 Total: 16.78 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.87 -10.22 -43.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158996625.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.880 kcal (2) G-P(sol) polarization free energy of solvation -32.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds