Wall clock time and date at job start Wed Apr 1 2020 03:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21285 * 120.00408 * 2 1 4 4 N 1.34779 * 120.00129 * 180.02562 * 2 1 3 5 5 C 1.46495 * 120.00558 * 180.02562 * 4 2 1 6 6 C 1.52993 * 109.47572 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47495 * 180.02562 * 6 5 4 8 8 C 1.29819 * 118.55551 * 95.00357 * 7 6 5 9 9 C 1.50144 * 123.28548 * 180.39895 * 8 7 6 10 10 N 1.46847 * 110.27572 * 342.92373 * 9 8 7 11 11 C 1.46900 * 110.99942 * 174.31319 * 10 9 8 12 12 C 1.50702 * 109.47036 * 66.04741 * 11 10 9 13 13 C 1.38311 * 119.92915 * 89.99553 * 12 11 10 14 14 C 1.38096 * 120.06782 * 180.02562 * 13 12 11 15 15 C 1.38883 * 119.93001 * 359.97438 * 14 13 12 16 16 O 1.35752 * 120.06733 * 179.72546 * 15 14 13 17 17 C 1.34835 * 116.99867 * 174.45565 * 16 15 14 18 18 H 1.08001 * 119.99908 * 5.03572 * 17 16 15 19 19 C 1.38654 * 119.99862 * 185.04415 * 17 16 15 20 20 N 1.31552 * 120.00015 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00013 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47583 * 89.99816 * 21 19 17 23 23 H 1.48496 * 109.47072 * 210.00091 * 21 19 17 24 24 H 1.48500 * 109.47137 * 329.99829 * 21 19 17 25 25 C 1.38878 * 119.86281 * 0.02562 * 15 14 13 26 26 C 1.38100 * 119.93217 * 359.97321 * 25 15 14 27 27 C 1.47241 * 110.20301 * 50.92691 * 10 9 8 28 28 C 1.50309 * 118.55264 * 275.02770 * 7 6 5 29 29 H 1.08995 * 109.47230 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47111 * 300.00181 * 1 2 3 31 31 H 1.09006 * 109.47152 * 59.99577 * 1 2 3 32 32 H 0.97000 * 119.99401 * 359.97438 * 4 2 1 33 33 H 1.09011 * 109.47102 * 59.99575 * 5 4 2 34 34 H 1.09002 * 109.47009 * 299.99999 * 5 4 2 35 35 H 1.09008 * 109.46857 * 60.00470 * 6 5 4 36 36 H 1.09002 * 109.47411 * 300.00315 * 6 5 4 37 37 H 1.08003 * 118.35604 * 0.37059 * 8 7 6 38 38 H 1.09001 * 109.33753 * 222.67915 * 9 8 7 39 39 H 1.09004 * 109.33710 * 103.16907 * 9 8 7 40 40 H 1.08992 * 109.47390 * 306.04832 * 11 10 9 41 41 H 1.08999 * 109.46842 * 186.04180 * 11 10 9 42 42 H 1.08001 * 119.96634 * 0.02562 * 13 12 11 43 43 H 1.07998 * 120.03699 * 179.97438 * 14 13 12 44 44 H 0.96998 * 120.00173 * 179.97438 * 20 19 17 45 45 H 1.08007 * 120.03391 * 179.97438 * 25 15 14 46 46 H 1.08001 * 119.96661 * 180.02562 * 26 25 15 47 47 H 1.09003 * 109.63454 * 50.89257 * 27 10 9 48 48 H 1.09000 * 109.63707 * 171.50009 * 27 10 9 49 49 H 1.09005 * 109.42972 * 283.57540 * 28 7 6 50 50 H 1.08999 * 109.43583 * 43.42381 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6458 -1.1673 0.0000 6 6 4.1558 -2.6097 -0.0001 7 6 5.6628 -2.6098 0.0011 8 6 6.2824 -2.7097 1.1375 9 6 7.7786 -2.7120 1.2629 10 7 8.3978 -2.9956 -0.0381 11 6 9.8595 -2.8691 0.0358 12 6 10.4117 -3.9430 0.9374 13 6 10.7756 -5.1681 0.4087 14 6 11.2814 -6.1544 1.2323 15 6 11.4251 -5.9149 2.5928 16 8 11.9168 -6.8844 3.4059 17 6 12.1384 -6.5495 4.6931 18 1 11.8498 -5.5735 5.0545 19 6 12.7368 -7.4581 5.5526 20 7 12.9535 -7.1312 6.8083 21 14 13.2354 -9.1463 4.9275 22 1 14.6278 -9.0928 4.4140 23 1 13.1549 -10.1290 6.0380 24 1 12.3200 -9.5594 3.8337 25 6 11.0588 -4.6836 3.1206 26 6 10.5536 -3.7013 2.2917 27 6 7.8426 -2.1047 -1.0706 28 6 6.3823 -2.4937 -1.3134 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6958 -2.0072 -0.0005 33 1 4.0089 -0.6540 0.8906 34 1 4.0095 -0.6529 -0.8895 35 1 3.7928 -3.1233 -0.8904 36 1 3.7921 -3.1238 0.8896 37 1 5.6920 -2.7951 2.0379 38 1 8.0796 -3.4757 1.9800 39 1 8.1126 -1.7365 1.6166 40 1 10.1196 -1.8893 0.4362 41 1 10.2845 -2.9784 -0.9620 42 1 10.6640 -5.3537 -0.6494 43 1 11.5650 -7.1111 0.8190 44 1 13.3718 -7.7670 7.4098 45 1 11.1689 -4.4945 4.1783 46 1 10.2689 -2.7435 2.7015 47 1 7.8936 -1.0710 -0.7284 48 1 8.4101 -2.2162 -1.9945 49 1 6.3440 -3.4509 -1.8336 50 1 5.9004 -1.7304 -1.9244 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158996625.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:34 Heat of formation + Delta-G solvation = -47.941348 kcal Electronic energy + Delta-G solvation = -28607.759225 eV Core-core repulsion = 24599.570941 eV Total energy + Delta-G solvation = -4008.188283 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.03871 -40.66451 -40.08654 -38.45264 -36.82969 -35.07849 -34.42846 -32.37350 -31.93527 -31.60980 -30.96132 -29.37475 -27.56523 -26.39374 -24.60028 -24.16534 -23.59201 -22.59207 -21.78210 -21.64082 -19.80365 -19.09558 -18.51189 -17.82050 -17.26120 -16.88549 -16.76642 -16.62948 -16.46940 -16.08131 -15.70273 -15.55519 -15.47599 -15.23673 -14.84718 -14.64209 -14.57199 -14.33016 -14.18540 -14.08338 -14.00918 -13.54819 -13.30685 -13.26569 -13.05149 -12.96986 -12.93972 -12.63211 -12.51620 -12.42734 -12.32381 -12.08298 -11.96793 -11.63083 -11.41374 -11.26854 -10.97620 -10.89833 -10.15052 -9.79479 -9.74088 -9.28582 -8.94454 -8.50211 -6.22779 0.58033 0.63431 1.24292 1.31084 1.35251 1.51856 1.62519 2.27943 2.32506 2.69705 2.97124 3.12592 3.30388 3.75144 3.81869 3.94491 4.00178 4.03156 4.09980 4.18167 4.20968 4.31706 4.39257 4.43801 4.49801 4.51844 4.57642 4.60552 4.62268 4.66632 4.68227 4.79848 4.84182 4.91957 4.94731 5.00612 5.02645 5.11091 5.14661 5.22282 5.26892 5.37900 5.42281 5.54161 5.58743 5.76652 5.81202 5.91191 5.99625 6.16337 6.20543 6.27981 6.57159 6.84193 7.25824 7.59059 8.61441 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017679 B = 0.001748 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.376244 B =16018.086092 C =16836.214484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.500 3.500 3 O -0.608 6.608 4 N -0.718 5.718 5 C 0.127 3.873 6 C -0.084 4.084 7 C -0.113 4.113 8 C -0.166 4.166 9 C 0.082 3.918 10 N -0.534 5.534 11 C 0.111 3.889 12 C -0.145 4.145 13 C -0.048 4.048 14 C -0.192 4.192 15 C 0.120 3.880 16 O -0.246 6.246 17 C -0.399 4.399 18 H 0.079 0.921 19 C 0.009 3.991 20 N -0.924 5.924 21 Si 0.972 3.028 22 H -0.265 1.265 23 H -0.267 1.267 24 H -0.263 1.263 25 C -0.237 4.237 26 C -0.066 4.066 27 C 0.049 3.951 28 C -0.076 4.076 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.419 0.581 33 H 0.046 0.954 34 H 0.059 0.941 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.068 0.932 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.101 0.899 42 H 0.153 0.847 43 H 0.128 0.872 44 H 0.284 0.716 45 H 0.105 0.895 46 H 0.125 0.875 47 H 0.033 0.967 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.570 10.014 -20.249 31.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.289 3.711 3 O -0.490 6.490 4 N -0.372 5.372 5 C 0.003 3.997 6 C -0.121 4.121 7 C -0.114 4.114 8 C -0.185 4.185 9 C -0.045 4.045 10 N -0.258 5.258 11 C -0.016 4.016 12 C -0.146 4.146 13 C -0.066 4.066 14 C -0.211 4.211 15 C 0.071 3.929 16 O -0.154 6.154 17 C -0.475 4.475 18 H 0.097 0.903 19 C -0.189 4.189 20 N -0.565 5.565 21 Si 0.794 3.206 22 H -0.190 1.190 23 H -0.192 1.192 24 H -0.187 1.187 25 C -0.257 4.257 26 C -0.085 4.085 27 C -0.079 4.079 28 C -0.113 4.113 29 H 0.126 0.874 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.257 0.743 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.129 0.871 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.119 0.881 42 H 0.171 0.829 43 H 0.146 0.854 44 H 0.094 0.906 45 H 0.123 0.877 46 H 0.143 0.857 47 H 0.051 0.949 48 H 0.113 0.887 49 H 0.104 0.896 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -22.131 9.972 -20.229 31.598 hybrid contribution 0.635 0.035 1.346 1.488 sum -21.496 10.007 -18.883 30.312 Atomic orbital electron populations 1.21874 0.88100 1.06506 1.05809 1.21669 0.92422 0.82869 0.74175 1.90718 1.72279 1.33561 1.52416 1.46114 1.07225 1.09369 1.74452 1.21198 0.79994 0.97288 1.01239 1.20795 0.91819 0.94963 1.04541 1.20913 0.95027 1.00240 0.95172 1.22162 0.94989 1.02906 0.98416 1.20912 0.92533 0.99161 0.91918 1.62447 1.04266 1.53385 1.05718 1.20899 0.86876 0.94438 0.99339 1.19621 1.04854 0.96735 0.93363 1.20904 0.94668 0.91155 0.99858 1.20534 1.08819 1.02068 0.89709 1.19684 0.93711 0.88267 0.91258 1.83516 1.75246 1.35940 1.20656 1.20694 1.41041 1.03008 0.82805 0.90337 1.25289 0.95762 1.03312 0.94536 1.69729 1.43427 1.38325 1.04971 0.85203 0.79325 0.77659 0.78432 1.19040 1.19180 1.18730 1.21219 1.08742 0.95258 1.00441 1.20866 0.96599 0.97674 0.93363 1.22294 0.96200 0.93719 0.95672 1.20512 0.93306 1.02887 0.94566 0.87375 0.88366 0.88070 0.74343 0.93567 0.92252 0.88592 0.90060 0.87101 0.91387 0.94161 0.94010 0.88051 0.82917 0.85381 0.90595 0.87735 0.85726 0.94883 0.88692 0.89647 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 10.39 71.23 0.74 -0.18 16 2 C 0.50 7.67 7.94 87.65 0.70 8.37 16 3 O -0.61 -16.37 17.10 -3.04 -0.05 -16.42 16 4 N -0.72 -7.59 5.56 -463.07 -2.57 -10.16 16 5 C 0.13 1.77 5.66 86.38 0.49 2.26 16 6 C -0.08 -0.90 5.38 29.84 0.16 -0.74 16 7 C -0.11 -1.80 5.15 -15.39 -0.08 -1.88 16 8 C -0.17 -3.35 9.50 26.69 0.25 -3.09 16 9 C 0.08 1.94 5.04 85.39 0.43 2.37 16 10 N -0.53 -11.54 4.71 -905.53 -4.27 -15.81 16 11 C 0.11 2.46 5.11 85.56 0.44 2.90 16 12 C -0.14 -4.30 4.88 -19.83 -0.10 -4.40 16 13 C -0.05 -1.45 9.69 22.25 0.22 -1.24 16 14 C -0.19 -7.37 9.99 22.39 0.22 -7.14 16 15 C 0.12 5.67 6.65 22.58 0.15 5.82 16 16 O -0.25 -13.56 8.59 -22.81 -0.20 -13.75 16 17 C -0.40 -23.86 9.95 67.92 0.68 -23.18 16 18 H 0.08 4.93 5.44 -2.91 -0.02 4.92 16 19 C 0.01 0.54 5.49 84.83 0.47 1.01 16 20 N -0.92 -55.70 13.96 21.61 0.30 -55.40 16 21 Si 0.97 45.85 28.62 68.60 1.96 47.81 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 25 C -0.24 -10.59 9.17 22.39 0.21 -10.39 16 26 C -0.07 -2.32 8.09 22.25 0.18 -2.14 16 27 C 0.05 0.79 5.59 86.26 0.48 1.27 16 28 C -0.08 -1.05 6.04 29.75 0.18 -0.88 16 29 H 0.11 -0.09 7.91 -2.39 -0.02 -0.11 16 30 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.10 0.48 8.14 -2.38 -0.02 0.47 16 32 H 0.42 1.38 8.31 -92.71 -0.77 0.61 16 33 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.10 0.71 8.13 -2.38 -0.02 0.69 16 36 H 0.08 0.82 7.85 -2.39 -0.02 0.80 16 37 H 0.11 2.11 7.81 -2.91 -0.02 2.09 16 38 H 0.07 1.94 6.52 -2.39 -0.02 1.93 16 39 H 0.04 0.94 8.06 -2.39 -0.02 0.92 16 40 H 0.04 0.90 8.00 -2.39 -0.02 0.88 16 41 H 0.10 1.81 7.88 -2.39 -0.02 1.79 16 42 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 43 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 44 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 45 H 0.10 5.17 5.64 -2.91 -0.02 5.15 16 46 H 0.12 3.80 8.03 -2.91 -0.02 3.78 16 47 H 0.03 0.56 8.08 -2.39 -0.02 0.54 16 48 H 0.09 1.23 7.92 -2.39 -0.02 1.21 16 49 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 50 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -77.18 408.40 1.15 -76.03 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.17 Total: 18.97 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: 5.81 Total: -31.27 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -6.54 Total: -81.36 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.25 Total: -30.17 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.96 Total: 47.81 kcal Total: -77.18 1.15 -76.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158996625.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.085 kcal (2) G-P(sol) polarization free energy of solvation -77.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds