Wall clock time and date at job start Wed Apr 1 2020 03:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42904 * 109.46812 * 2 1 4 4 C 1.35912 * 117.00060 * 180.02562 * 3 2 1 5 5 C 1.38853 * 119.98179 * 0.02562 * 4 3 2 6 6 C 1.38240 * 120.23406 * 179.97438 * 5 4 3 7 7 C 1.38008 * 120.20994 * 359.73816 * 6 5 4 8 8 C 1.39559 * 119.96394 * 0.51621 * 7 6 5 9 9 C 1.47857 * 120.12223 * 179.76725 * 8 7 6 10 10 O 1.21553 * 120.00646 * 179.72127 * 9 8 7 11 11 N 1.34784 * 119.99841 * 359.72032 * 9 8 7 12 12 C 1.46494 * 120.00109 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47191 * 179.97438 * 12 11 9 14 14 C 1.50695 * 109.47225 * 179.97438 * 13 12 11 15 15 C 1.29452 * 117.69233 * 95.00476 * 14 13 12 16 16 C 1.50327 * 123.65264 * 180.57855 * 15 14 13 17 17 N 1.47000 * 109.16339 * 349.27440 * 16 15 14 18 18 C 1.36939 * 121.37519 * 222.96589 * 17 16 15 19 19 H 1.08005 * 119.99838 * 155.97782 * 18 17 16 20 20 C 1.38810 * 120.00205 * 335.97906 * 18 17 16 21 21 N 1.31617 * 119.99875 * 344.51418 * 20 18 17 22 22 Si 1.86807 * 119.99988 * 164.50951 * 20 18 17 23 23 H 1.48498 * 109.46949 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46820 * 120.00005 * 22 20 18 25 25 H 1.48497 * 109.46961 * 240.00068 * 22 20 18 26 26 C 1.47340 * 117.24944 * 42.95351 * 17 16 15 27 27 C 1.49965 * 117.69465 * 275.22225 * 14 13 12 28 28 C 1.38453 * 119.98379 * 179.97438 * 4 3 2 29 29 H 1.09007 * 109.46619 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47464 * 300.00017 * 1 2 3 31 31 H 1.09002 * 109.47149 * 60.00817 * 1 2 3 32 32 H 1.08996 * 109.47352 * 239.99527 * 2 1 3 33 33 H 1.09002 * 109.47149 * 119.99183 * 2 1 3 34 34 H 1.07996 * 119.88054 * 359.95612 * 5 4 3 35 35 H 1.08003 * 119.89675 * 179.97438 * 6 5 4 36 36 H 1.07996 * 120.02039 * 180.25565 * 7 6 5 37 37 H 0.97000 * 119.99724 * 359.97438 * 11 9 8 38 38 H 1.08999 * 109.47398 * 59.99913 * 12 11 9 39 39 H 1.09000 * 109.47227 * 299.99632 * 12 11 9 40 40 H 1.09004 * 109.46997 * 60.00223 * 13 12 11 41 41 H 1.08997 * 109.47552 * 300.00263 * 13 12 11 42 42 H 1.08007 * 118.17640 * 0.85757 * 15 14 13 43 43 H 1.08998 * 109.52186 * 109.18887 * 16 15 14 44 44 H 1.08999 * 109.51691 * 229.36942 * 16 15 14 45 45 H 0.97002 * 119.99820 * 180.02562 * 21 20 18 46 46 H 1.08996 * 109.78029 * 57.80236 * 26 17 16 47 47 H 1.09002 * 109.77908 * 178.61294 * 26 17 16 48 48 H 1.08998 * 109.43384 * 40.82027 * 27 14 13 49 49 H 1.09000 * 109.13218 * 281.42810 * 27 14 13 50 50 H 1.07999 * 120.10162 * 0.03935 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5255 -0.0005 5 6 4.1992 0.4241 -0.0016 6 6 5.5705 0.5993 -0.0027 7 6 6.1082 1.8703 -0.0082 8 6 5.2663 2.9833 -0.0018 9 6 5.8386 4.3466 -0.0024 10 8 5.1033 5.3146 -0.0019 11 7 7.1757 4.5162 -0.0035 12 6 7.7428 5.8669 -0.0036 13 6 9.2703 5.7787 -0.0043 14 6 9.8537 7.1682 -0.0050 15 6 10.1793 7.6845 1.1365 16 6 10.7591 9.0627 1.2924 17 7 11.1214 9.5865 -0.0324 18 6 12.3014 10.2501 -0.2385 19 1 12.7353 10.2861 -1.2269 20 6 12.9399 10.8766 0.8230 21 7 12.2872 11.1010 1.9437 22 14 14.7255 11.4010 0.6609 23 1 15.2274 11.0379 -0.6887 24 1 14.8286 12.8706 0.8479 25 1 15.5395 10.7121 1.6942 26 6 10.1626 9.3678 -1.1296 27 6 10.0114 7.8572 -1.3277 28 6 3.8824 2.8051 -0.0011 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5137 0.8901 34 1 3.7841 -0.5729 -0.0013 35 1 6.2231 -0.2612 -0.0031 36 1 7.1799 2.0036 -0.0132 37 1 7.7625 3.7438 -0.0035 38 1 7.4105 6.4006 0.8868 39 1 7.4090 6.4011 -0.8932 40 1 9.6030 5.2449 -0.8946 41 1 9.6039 5.2447 0.8854 42 1 10.0302 7.0904 2.0261 43 1 10.0209 9.7183 1.7541 44 1 11.6485 9.0146 1.9208 45 1 12.7333 11.5391 2.6853 46 1 9.1983 9.8039 -0.8692 47 1 10.5394 9.8239 -2.0451 48 1 9.1355 7.6604 -1.9458 49 1 10.8978 7.4689 -1.8293 50 1 3.2258 3.6625 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161328374.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:47 Heat of formation + Delta-G solvation = -16.494360 kcal Electronic energy + Delta-G solvation = -28375.751071 eV Core-core repulsion = 24368.926431 eV Total energy + Delta-G solvation = -4006.824640 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.80584 -39.69261 -37.97079 -37.48828 -35.47420 -33.62277 -32.50895 -31.78448 -31.20395 -30.08246 -29.73202 -28.54728 -25.67284 -24.74918 -23.39499 -22.84504 -22.73552 -22.21672 -20.97034 -20.52100 -18.97094 -17.58882 -16.96982 -16.67046 -16.60434 -16.28607 -15.90876 -15.63094 -15.40556 -14.99565 -14.44114 -14.16005 -14.06655 -13.88051 -13.81976 -13.72423 -13.54852 -13.29914 -13.09289 -12.65168 -12.53890 -12.39631 -12.20479 -12.12812 -11.93770 -11.56415 -11.40143 -11.35974 -11.25423 -10.99030 -10.89871 -10.72484 -10.31258 -10.25825 -10.06788 -9.78898 -9.52277 -9.48513 -9.13195 -8.69401 -8.63787 -7.90169 -6.70006 -5.76443 -3.15068 0.44380 0.97515 2.57614 2.61968 2.87405 3.18732 3.39033 3.46478 3.48740 3.51543 4.26881 4.30690 4.38871 4.51705 4.52640 4.57043 4.66334 4.72007 4.87813 5.04125 5.11259 5.12364 5.24356 5.26724 5.29345 5.42147 5.50386 5.52380 5.58108 5.66306 5.77393 5.81899 5.89796 5.92128 6.02386 6.06179 6.16146 6.16900 6.23764 6.34823 6.42771 6.58248 6.81753 6.93499 6.93990 7.26077 7.31442 7.36843 7.43867 7.77872 7.90829 8.04544 8.41637 9.23173 9.86096 10.44820 11.33965 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.036978 B = 0.001504 C = 0.001486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.021659 B =18617.922335 C =18835.133143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.313 6.313 4 C 0.123 3.877 5 C -0.188 4.188 6 C -0.086 4.086 7 C -0.125 4.125 8 C -0.091 4.091 9 C 0.555 3.445 10 O -0.531 6.531 11 N -0.723 5.723 12 C 0.123 3.877 13 C -0.092 4.092 14 C -0.143 4.143 15 C -0.146 4.146 16 C 0.196 3.804 17 N -0.596 5.596 18 C -0.244 4.244 19 H 0.069 0.931 20 C -0.002 4.002 21 N -0.909 5.909 22 Si 0.904 3.096 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.143 3.857 27 C -0.091 4.091 28 C -0.093 4.093 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.399 0.601 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.038 0.962 44 H 0.091 0.909 45 H 0.253 0.747 46 H 0.024 0.976 47 H 0.056 0.944 48 H 0.053 0.947 49 H 0.062 0.938 50 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.088 -27.357 -3.685 33.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.227 6.227 4 C 0.078 3.922 5 C -0.207 4.207 6 C -0.104 4.104 7 C -0.144 4.144 8 C -0.094 4.094 9 C 0.341 3.659 10 O -0.408 6.408 11 N -0.374 5.374 12 C 0.001 3.999 13 C -0.129 4.129 14 C -0.144 4.144 15 C -0.165 4.165 16 C 0.071 3.929 17 N -0.319 5.319 18 C -0.374 4.374 19 H 0.086 0.914 20 C -0.200 4.200 21 N -0.555 5.555 22 Si 0.734 3.266 23 H -0.203 1.203 24 H -0.218 1.218 25 H -0.216 1.216 26 C 0.016 3.984 27 C -0.130 4.130 28 C -0.113 4.113 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.234 0.766 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.109 0.891 43 H 0.056 0.944 44 H 0.108 0.892 45 H 0.063 0.937 46 H 0.042 0.958 47 H 0.075 0.925 48 H 0.072 0.928 49 H 0.080 0.920 50 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -18.680 -26.388 -3.551 32.525 hybrid contribution 1.331 -0.496 0.109 1.424 sum -17.349 -26.884 -3.442 32.181 Atomic orbital electron populations 1.21786 0.92516 1.02949 1.03783 1.22824 0.96136 0.81772 1.01411 1.86116 1.18591 1.29467 1.88575 1.18823 0.82672 0.93698 0.97008 1.21435 0.94468 0.98198 1.06573 1.20884 0.94338 0.97206 0.97976 1.21229 0.99634 0.91965 1.01586 1.19747 0.93334 0.93225 1.03132 1.18181 0.82428 0.88432 0.76862 1.90808 1.59516 1.41333 1.49148 1.46010 1.06350 1.10049 1.75036 1.21496 0.93201 0.82174 1.03046 1.20912 0.92915 0.96940 1.02177 1.20212 1.03580 0.94629 0.95937 1.23126 0.97747 0.99632 0.96033 1.19704 0.98724 0.86439 0.87993 1.44137 1.18576 1.64358 1.04810 1.19233 0.96603 1.26078 0.95466 0.91361 1.24986 0.98951 0.98633 0.97410 1.70030 1.34911 1.45570 1.04954 0.86191 0.85097 0.77860 0.77472 1.20328 1.21769 1.21642 1.20954 0.93032 0.91950 0.92449 1.20760 0.99919 0.98481 0.93874 1.20494 0.94113 0.95607 1.01079 0.90271 0.91361 0.91364 0.91928 0.91924 0.85101 0.84993 0.85296 0.76603 0.91027 0.91002 0.91421 0.91493 0.89064 0.94420 0.89156 0.93704 0.95830 0.92537 0.92830 0.91977 0.83727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 10.28 37.16 0.38 -0.24 16 2 C 0.05 0.28 5.46 37.16 0.20 0.49 16 3 O -0.31 -2.84 10.13 -19.46 -0.20 -3.03 16 4 C 0.12 1.16 6.68 -39.27 -0.26 0.89 16 5 C -0.19 -1.34 9.03 -39.35 -0.36 -1.70 16 6 C -0.09 -0.56 10.03 -39.67 -0.40 -0.96 16 7 C -0.13 -0.97 9.54 -39.17 -0.37 -1.34 16 8 C -0.09 -0.97 5.87 -104.99 -0.62 -1.59 16 9 C 0.55 7.24 7.77 -12.32 -0.10 7.15 16 10 O -0.53 -9.06 16.35 5.32 0.09 -8.97 16 11 N -0.72 -7.94 5.51 -61.25 -0.34 -8.28 16 12 C 0.12 1.61 5.66 -4.04 -0.02 1.59 16 13 C -0.09 -1.18 5.32 -27.89 -0.15 -1.32 16 14 C -0.14 -2.46 5.11 -100.99 -0.52 -2.98 16 15 C -0.15 -2.83 9.47 -35.78 -0.34 -3.17 16 16 C 0.20 4.77 5.23 -5.10 -0.03 4.74 16 17 N -0.60 -15.19 3.01 -173.68 -0.52 -15.72 16 18 C -0.24 -6.78 9.71 -15.06 -0.15 -6.93 16 19 H 0.07 1.85 7.88 -52.48 -0.41 1.44 16 20 C 0.00 -0.06 5.01 -17.43 -0.09 -0.14 16 21 N -0.91 -26.53 11.08 55.49 0.61 -25.92 16 22 Si 0.90 21.84 29.58 -169.99 -5.03 16.82 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 C 0.14 3.05 6.58 -3.53 -0.02 3.02 16 27 C -0.09 -1.62 5.94 -28.19 -0.17 -1.79 16 28 C -0.09 -1.03 9.53 -39.02 -0.37 -1.40 16 29 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.26 7.65 -51.93 -0.40 -0.14 16 33 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 34 H 0.13 0.61 6.28 -52.49 -0.33 0.28 16 35 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 36 H 0.13 0.69 6.40 -52.49 -0.34 0.35 16 37 H 0.40 3.13 6.50 -40.82 -0.27 2.86 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.07 1.02 8.07 -51.93 -0.42 0.60 16 40 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 41 H 0.07 0.79 7.78 -51.93 -0.40 0.39 16 42 H 0.09 1.57 7.73 -52.48 -0.41 1.16 16 43 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.09 2.42 6.41 -51.93 -0.33 2.09 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 48 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 49 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 50 H 0.14 1.74 7.65 -52.49 -0.40 1.33 16 LS Contribution 406.72 15.07 6.13 6.13 Total: -1.00 -33.51 406.72 -10.49 -44.00 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -7.87 Total: 0.65 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -3.37 Total: -5.68 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.25 Total: -49.91 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -0.11 Total: -12.00 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.51 -10.49 -44.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161328374.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.506 kcal (2) G-P(sol) polarization free energy of solvation -33.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds