Wall clock time and date at job start Wed Apr 1 2020 03:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42904 * 109.46812 * 2 1 4 4 C 1.35912 * 117.00060 * 180.02562 * 3 2 1 5 5 C 1.38853 * 119.98179 * 0.02562 * 4 3 2 6 6 C 1.38240 * 120.23406 * 179.97438 * 5 4 3 7 7 C 1.38008 * 120.20994 * 359.73816 * 6 5 4 8 8 C 1.39559 * 119.96394 * 0.51621 * 7 6 5 9 9 C 1.47857 * 120.12223 * 179.76725 * 8 7 6 10 10 O 1.21553 * 120.00646 * 179.72127 * 9 8 7 11 11 N 1.34784 * 119.99841 * 359.72032 * 9 8 7 12 12 C 1.46494 * 120.00109 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47191 * 179.97438 * 12 11 9 14 14 C 1.50695 * 109.47225 * 179.97438 * 13 12 11 15 15 C 1.29452 * 117.69233 * 95.00476 * 14 13 12 16 16 C 1.50327 * 123.65264 * 180.57855 * 15 14 13 17 17 N 1.47000 * 109.16339 * 349.27440 * 16 15 14 18 18 C 1.36939 * 121.37519 * 222.96589 * 17 16 15 19 19 H 1.08005 * 119.99838 * 155.97782 * 18 17 16 20 20 C 1.38810 * 120.00205 * 335.97906 * 18 17 16 21 21 N 1.31617 * 119.99875 * 344.51418 * 20 18 17 22 22 Si 1.86807 * 119.99988 * 164.50951 * 20 18 17 23 23 H 1.48498 * 109.46949 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46820 * 120.00005 * 22 20 18 25 25 H 1.48497 * 109.46961 * 240.00068 * 22 20 18 26 26 C 1.47340 * 117.24944 * 42.95351 * 17 16 15 27 27 C 1.49965 * 117.69465 * 275.22225 * 14 13 12 28 28 C 1.38453 * 119.98379 * 179.97438 * 4 3 2 29 29 H 1.09007 * 109.46619 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47464 * 300.00017 * 1 2 3 31 31 H 1.09002 * 109.47149 * 60.00817 * 1 2 3 32 32 H 1.08996 * 109.47352 * 239.99527 * 2 1 3 33 33 H 1.09002 * 109.47149 * 119.99183 * 2 1 3 34 34 H 1.07996 * 119.88054 * 359.95612 * 5 4 3 35 35 H 1.08003 * 119.89675 * 179.97438 * 6 5 4 36 36 H 1.07996 * 120.02039 * 180.25565 * 7 6 5 37 37 H 0.97000 * 119.99724 * 359.97438 * 11 9 8 38 38 H 1.08999 * 109.47398 * 59.99913 * 12 11 9 39 39 H 1.09000 * 109.47227 * 299.99632 * 12 11 9 40 40 H 1.09004 * 109.46997 * 60.00223 * 13 12 11 41 41 H 1.08997 * 109.47552 * 300.00263 * 13 12 11 42 42 H 1.08007 * 118.17640 * 0.85757 * 15 14 13 43 43 H 1.08998 * 109.52186 * 109.18887 * 16 15 14 44 44 H 1.08999 * 109.51691 * 229.36942 * 16 15 14 45 45 H 0.97002 * 119.99820 * 180.02562 * 21 20 18 46 46 H 1.08996 * 109.78029 * 57.80236 * 26 17 16 47 47 H 1.09002 * 109.77908 * 178.61294 * 26 17 16 48 48 H 1.08998 * 109.43384 * 40.82027 * 27 14 13 49 49 H 1.09000 * 109.13218 * 281.42810 * 27 14 13 50 50 H 1.07999 * 120.10162 * 0.03935 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5255 -0.0005 5 6 4.1992 0.4241 -0.0016 6 6 5.5705 0.5993 -0.0027 7 6 6.1082 1.8703 -0.0082 8 6 5.2663 2.9833 -0.0018 9 6 5.8386 4.3466 -0.0024 10 8 5.1033 5.3146 -0.0019 11 7 7.1757 4.5162 -0.0035 12 6 7.7428 5.8669 -0.0036 13 6 9.2703 5.7787 -0.0043 14 6 9.8537 7.1682 -0.0050 15 6 10.1793 7.6845 1.1365 16 6 10.7591 9.0627 1.2924 17 7 11.1214 9.5865 -0.0324 18 6 12.3014 10.2501 -0.2385 19 1 12.7353 10.2861 -1.2269 20 6 12.9399 10.8766 0.8230 21 7 12.2872 11.1010 1.9437 22 14 14.7255 11.4010 0.6609 23 1 15.2274 11.0379 -0.6887 24 1 14.8286 12.8706 0.8479 25 1 15.5395 10.7121 1.6942 26 6 10.1626 9.3678 -1.1296 27 6 10.0114 7.8572 -1.3277 28 6 3.8824 2.8051 -0.0011 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5137 0.8901 34 1 3.7841 -0.5729 -0.0013 35 1 6.2231 -0.2612 -0.0031 36 1 7.1799 2.0036 -0.0132 37 1 7.7625 3.7438 -0.0035 38 1 7.4105 6.4006 0.8868 39 1 7.4090 6.4011 -0.8932 40 1 9.6030 5.2449 -0.8946 41 1 9.6039 5.2447 0.8854 42 1 10.0302 7.0904 2.0261 43 1 10.0209 9.7183 1.7541 44 1 11.6485 9.0146 1.9208 45 1 12.7333 11.5391 2.6853 46 1 9.1983 9.8039 -0.8692 47 1 10.5394 9.8239 -2.0451 48 1 9.1355 7.6604 -1.9458 49 1 10.8978 7.4689 -1.8293 50 1 3.2258 3.6625 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161328374.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:46 Heat of formation + Delta-G solvation = -36.867374 kcal Electronic energy + Delta-G solvation = -28376.634511 eV Core-core repulsion = 24368.926431 eV Total energy + Delta-G solvation = -4007.708080 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.52843 -40.53865 -39.47484 -38.20837 -36.79411 -35.17992 -33.29320 -32.90147 -32.24051 -31.47977 -30.73601 -29.85897 -27.23297 -25.63890 -24.66880 -24.10833 -23.44829 -23.26260 -22.46991 -21.39339 -19.72657 -19.43314 -17.81617 -17.56973 -17.23997 -17.08658 -17.00338 -16.95684 -16.55023 -16.38458 -15.77186 -15.49328 -15.29022 -15.03119 -14.91824 -14.74178 -14.42458 -14.33249 -14.21807 -13.86172 -13.42856 -13.35784 -13.21657 -13.08135 -12.93194 -12.84412 -12.80187 -12.60153 -12.58568 -12.35774 -12.12459 -11.93223 -11.88046 -11.67403 -11.66657 -11.29535 -11.05863 -10.69235 -10.30476 -10.00016 -9.48280 -9.30045 -8.75054 -7.87876 -5.30165 -0.25763 0.36941 1.41159 1.46813 1.47552 1.58820 1.77295 1.95455 2.35962 2.51271 2.80153 3.28995 3.58538 3.68164 3.76927 3.97075 4.01054 4.04933 4.06527 4.10212 4.11745 4.20045 4.29720 4.32705 4.37274 4.48785 4.55790 4.59510 4.69192 4.79070 4.87322 4.91076 4.91846 4.93743 4.97903 5.06974 5.15863 5.18276 5.23549 5.24321 5.27830 5.33679 5.35354 5.42322 5.50953 5.61333 5.64217 5.88647 6.29071 6.33854 6.39490 6.47601 7.12731 7.13394 7.83408 8.38435 9.20931 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.036978 B = 0.001504 C = 0.001486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.021659 B =18617.922335 C =18835.133143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.044 3.956 3 O -0.339 6.339 4 C 0.112 3.888 5 C -0.178 4.178 6 C -0.078 4.078 7 C -0.118 4.118 8 C -0.109 4.109 9 C 0.552 3.448 10 O -0.584 6.584 11 N -0.705 5.705 12 C 0.131 3.869 13 C -0.078 4.078 14 C -0.120 4.120 15 C -0.174 4.174 16 C 0.206 3.794 17 N -0.615 5.615 18 C -0.257 4.257 19 H 0.072 0.928 20 C -0.056 4.056 21 N -0.942 5.942 22 Si 0.971 3.029 23 H -0.265 1.265 24 H -0.293 1.293 25 H -0.290 1.290 26 C 0.134 3.866 27 C -0.087 4.087 28 C -0.123 4.123 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.161 0.839 35 H 0.171 0.829 36 H 0.158 0.842 37 H 0.418 0.582 38 H 0.050 0.950 39 H 0.061 0.939 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.114 0.886 43 H 0.001 0.999 44 H 0.055 0.945 45 H 0.249 0.751 46 H 0.016 0.984 47 H 0.059 0.941 48 H 0.085 0.915 49 H 0.070 0.930 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.133 -31.814 -5.052 36.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.030 4.030 3 O -0.254 6.254 4 C 0.067 3.933 5 C -0.197 4.197 6 C -0.096 4.096 7 C -0.137 4.137 8 C -0.112 4.112 9 C 0.340 3.660 10 O -0.465 6.465 11 N -0.357 5.357 12 C 0.007 3.993 13 C -0.115 4.115 14 C -0.121 4.121 15 C -0.193 4.193 16 C 0.081 3.919 17 N -0.339 5.339 18 C -0.387 4.387 19 H 0.090 0.910 20 C -0.251 4.251 21 N -0.589 5.589 22 Si 0.799 3.201 23 H -0.189 1.189 24 H -0.220 1.220 25 H -0.216 1.216 26 C 0.009 3.991 27 C -0.126 4.126 28 C -0.142 4.142 29 H 0.121 0.879 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.178 0.822 35 H 0.189 0.811 36 H 0.176 0.824 37 H 0.257 0.743 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.115 0.885 41 H 0.105 0.895 42 H 0.132 0.868 43 H 0.018 0.982 44 H 0.074 0.926 45 H 0.058 0.942 46 H 0.034 0.966 47 H 0.078 0.922 48 H 0.104 0.896 49 H 0.088 0.912 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -17.715 -30.899 -4.945 35.958 hybrid contribution 0.924 0.838 0.459 1.330 sum -16.790 -30.061 -4.486 34.723 Atomic orbital electron populations 1.21831 0.91980 1.04238 1.02944 1.23131 0.96677 0.80375 1.02798 1.86097 1.18685 1.31902 1.88667 1.18911 0.83271 0.93697 0.97447 1.21821 0.94699 0.98637 1.04551 1.21360 0.94496 0.97841 0.95908 1.21557 1.00664 0.91405 1.00028 1.19597 0.93422 0.92738 1.05461 1.18638 0.82626 0.88992 0.75751 1.90778 1.60801 1.43194 1.51730 1.45763 1.05964 1.09969 1.74037 1.21244 0.93387 0.83027 1.01635 1.20808 0.91975 0.94128 1.04616 1.20569 1.00456 0.96391 0.94719 1.22830 1.00572 0.97733 0.98194 1.19350 0.96564 0.88902 0.87052 1.44428 1.18933 1.64505 1.06020 1.19593 0.97632 1.25851 0.95661 0.91046 1.25798 1.02886 0.99212 0.97204 1.70209 1.36407 1.46662 1.05633 0.85140 0.80128 0.76959 0.77840 1.18897 1.22029 1.21637 1.21158 0.91726 0.94933 0.91290 1.20718 1.01717 0.95352 0.94805 1.20430 0.94452 0.95885 1.03474 0.87861 0.92245 0.92191 0.90389 0.90454 0.82191 0.81139 0.82441 0.74337 0.93129 0.92098 0.88539 0.89509 0.86834 0.98158 0.92633 0.94171 0.96613 0.92217 0.89623 0.91152 0.86592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 71.98 0.74 -0.34 16 2 C 0.04 0.39 5.46 71.98 0.39 0.79 16 3 O -0.34 -6.10 10.13 -92.55 -0.94 -7.03 16 4 C 0.11 2.03 6.68 22.47 0.15 2.18 16 5 C -0.18 -1.96 9.03 22.42 0.20 -1.76 16 6 C -0.08 -0.68 10.03 22.22 0.22 -0.45 16 7 C -0.12 -1.42 9.54 22.53 0.21 -1.20 16 8 C -0.11 -2.25 5.87 -20.10 -0.12 -2.36 16 9 C 0.55 14.32 7.77 86.79 0.67 14.99 16 10 O -0.58 -20.96 16.35 -3.88 -0.06 -21.02 16 11 N -0.70 -13.93 5.51 -465.96 -2.57 -16.50 16 12 C 0.13 3.17 5.66 86.38 0.49 3.66 16 13 C -0.08 -1.70 5.32 29.85 0.16 -1.55 16 14 C -0.12 -3.91 5.11 -15.14 -0.08 -3.98 16 15 C -0.17 -6.73 9.47 27.11 0.26 -6.47 16 16 C 0.21 10.49 5.23 85.42 0.45 10.94 16 17 N -0.61 -32.13 3.01 -703.40 -2.12 -34.24 16 18 C -0.26 -14.53 9.71 84.03 0.82 -13.72 16 19 H 0.07 3.89 7.88 -2.91 -0.02 3.87 16 20 C -0.06 -3.23 5.01 84.86 0.43 -2.80 16 21 N -0.94 -57.25 11.08 21.65 0.24 -57.01 16 22 Si 0.97 45.64 29.58 68.60 2.03 47.67 16 23 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 26 C 0.13 5.73 6.58 86.25 0.57 6.30 16 27 C -0.09 -2.91 5.94 29.65 0.18 -2.73 16 28 C -0.12 -2.83 9.53 22.63 0.22 -2.62 16 29 H 0.10 0.21 8.14 -2.38 -0.02 0.19 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.08 0.44 7.65 -2.39 -0.02 0.42 16 33 H 0.08 0.44 7.66 -2.39 -0.02 0.42 16 34 H 0.16 0.77 6.28 -2.91 -0.02 0.75 16 35 H 0.17 0.22 8.06 -2.91 -0.02 0.20 16 36 H 0.16 0.89 6.40 -2.91 -0.02 0.87 16 37 H 0.42 4.88 6.50 -92.71 -0.60 4.28 16 38 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.06 1.64 8.07 -2.39 -0.02 1.62 16 40 H 0.10 1.68 8.11 -2.38 -0.02 1.66 16 41 H 0.09 1.66 7.78 -2.39 -0.02 1.64 16 42 H 0.11 3.82 7.73 -2.91 -0.02 3.80 16 43 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 44 H 0.06 3.15 6.41 -2.39 -0.02 3.13 16 45 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 46 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.06 2.45 7.96 -2.39 -0.02 2.43 16 48 H 0.09 2.35 8.07 -2.39 -0.02 2.33 16 49 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 50 H 0.12 3.20 7.65 -2.91 -0.02 3.18 16 Total: -1.00 -79.03 406.72 2.87 -76.15 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.34 Total: 13.12 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: 5.95 Total: -1.14 kcal Atomic # 7 Polarization: -103.31 SS G_CDS: -4.44 Total: -107.75 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -1.00 Total: -28.05 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -79.03 2.87 -76.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161328374.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.285 kcal (2) G-P(sol) polarization free energy of solvation -79.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds