Wall clock time and date at job start Wed Apr 1 2020 03:01:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 O 1.42905 * 109.47230 * 2 1
4 4 C 1.35656 * 116.99679 * 180.02562 * 3 2 1
5 5 C 1.38706 * 120.15474 * 359.97438 * 4 3 2
6 6 C 1.38056 * 120.08419 * 180.02562 * 5 4 3
7 7 C 1.38542 * 120.38978 * 0.02562 * 6 5 4
8 8 C 1.37789 * 120.30376 * 359.97438 * 7 6 5
9 9 C 1.39703 * 119.90517 * 359.76794 * 8 7 6
10 10 C 1.47533 * 120.19177 * 180.25334 * 9 8 7
11 11 O 1.21589 * 119.99982 * 180.25312 * 10 9 8
12 12 N 1.34774 * 120.00067 * 0.25605 * 10 9 8
13 13 C 1.46503 * 119.99886 * 180.02562 * 12 10 9
14 14 C 1.53009 * 109.46940 * 179.97438 * 13 12 10
15 15 C 1.50694 * 109.47220 * 179.97438 * 14 13 12
16 16 C 1.29445 * 117.69691 * 94.99445 * 15 14 13
17 17 C 1.50326 * 123.65362 * 180.85596 * 16 15 14
18 18 N 1.47012 * 109.16261 * 349.02877 * 17 16 15
19 19 C 1.36937 * 121.37202 * 222.96606 * 18 17 16
20 20 H 1.08001 * 119.99981 * 155.97221 * 19 18 17
21 21 C 1.38814 * 120.00202 * 335.96909 * 19 18 17
22 22 N 1.31622 * 119.99819 * 344.51943 * 21 19 18
23 23 Si 1.86795 * 120.00258 * 164.51293 * 21 19 18
24 24 H 1.48504 * 109.47039 * 0.02562 * 23 21 19
25 25 H 1.48495 * 109.47140 * 120.00213 * 23 21 19
26 26 H 1.48498 * 109.47309 * 240.00658 * 23 21 19
27 27 C 1.47331 * 117.25035 * 42.94701 * 18 17 16
28 28 C 1.49975 * 117.69260 * 274.73923 * 15 14 13
29 29 H 1.09007 * 109.46874 * 60.00342 * 1 2 3
30 30 H 1.08992 * 109.47065 * 180.02562 * 1 2 3
31 31 H 1.08998 * 109.47070 * 300.00630 * 1 2 3
32 32 H 1.08996 * 109.47453 * 239.99725 * 2 1 3
33 33 H 1.09006 * 109.47227 * 119.99247 * 2 1 3
34 34 H 1.07997 * 119.95613 * 359.97438 * 5 4 3
35 35 H 1.08006 * 119.80116 * 179.97438 * 6 5 4
36 36 H 1.08004 * 119.84932 * 179.97438 * 7 6 5
37 37 H 1.08000 * 120.04293 * 180.02562 * 8 7 6
38 38 H 0.96999 * 120.00185 * 359.97438 * 12 10 9
39 39 H 1.09005 * 109.46995 * 299.98942 * 13 12 10
40 40 H 1.08997 * 109.47433 * 59.99948 * 13 12 10
41 41 H 1.08997 * 109.46744 * 299.99645 * 14 13 12
42 42 H 1.09001 * 109.46849 * 59.99347 * 14 13 12
43 43 H 1.08001 * 118.17522 * 0.88491 * 16 15 14
44 44 H 1.09007 * 109.51970 * 108.92981 * 17 16 15
45 45 H 1.08993 * 109.52721 * 229.12196 * 17 16 15
46 46 H 0.97001 * 119.99704 * 179.97438 * 22 21 19
47 47 H 1.09003 * 109.78587 * 57.80790 * 27 18 17
48 48 H 1.08997 * 109.78027 * 178.61845 * 27 18 17
49 49 H 1.09001 * 109.31452 * 281.29217 * 28 15 14
50 50 H 1.09003 * 109.31263 * 40.71305 * 28 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 3.3512 1.5250 -0.0005
5 6 4.1991 0.4272 -0.0005
6 6 5.5675 0.6096 -0.0005
7 6 6.1043 1.8869 0.0000
8 6 5.2769 2.9887 0.0000
9 6 3.8903 2.8186 -0.0055
10 6 2.9986 3.9939 -0.0112
11 8 1.7923 3.8418 -0.0112
12 7 3.5211 5.2362 -0.0163
13 6 2.6356 6.4033 -0.0214
14 6 3.4766 7.6815 -0.0261
15 6 2.5658 8.8821 -0.0319
16 6 2.2806 9.4265 1.1073
17 6 1.3729 10.6152 1.2586
18 7 1.1017 11.1873 -0.0682
19 6 1.1132 12.5406 -0.2769
20 1 1.3002 12.9329 -1.2656
21 6 0.8844 13.4082 0.7823
22 7 0.3624 12.9557 1.9026
23 14 1.3176 15.2178 0.6177
24 1 1.8857 15.4701 -0.7310
25 1 0.0934 16.0383 0.8000
26 1 2.3175 15.5836 1.6528
27 6 0.8175 10.2445 -1.1641
28 6 2.0583 9.3655 -1.3578
29 1 -0.3633 0.5138 -0.8901
30 1 -0.3633 -1.0276 0.0005
31 1 -0.3633 0.5139 0.8899
32 1 1.8934 -0.5138 -0.8899
33 1 1.8934 -0.5137 0.8901
34 1 3.7881 -0.5716 0.0003
35 1 6.2235 -0.2484 -0.0001
36 1 7.1761 2.0195 0.0004
37 1 5.6999 3.9825 -0.0001
38 1 4.4835 5.3576 -0.0160
39 1 2.0069 6.3785 -0.9115
40 1 2.0065 6.3860 0.8685
41 1 4.1050 7.7062 0.8642
42 1 4.1061 7.6990 -0.9158
43 1 2.7197 9.0035 1.9988
44 1 0.4357 10.3015 1.7185
45 1 1.8551 11.3642 1.8866
46 1 0.2029 13.5620 2.6429
47 1 -0.0411 9.6251 -0.9046
48 1 0.6114 10.7962 -2.0812
49 1 2.8390 9.9418 -1.8543
50 1 1.7973 8.5081 -1.9783
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001161805307.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:01:50
Heat of formation + Delta-G solvation = -13.661097 kcal
Electronic energy + Delta-G solvation = -29041.693286 eV
Core-core repulsion = 25034.991506 eV
Total energy + Delta-G solvation = -4006.701780 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-40.83691 -39.18817 -37.88148 -37.64516 -35.32396 -33.55266 -32.35028 -31.81839
-31.06450 -29.94203 -29.73969 -28.51441 -25.48565 -24.54359 -23.84995 -22.83524
-22.33678 -21.96375 -20.90709 -20.49003 -18.83584 -17.60089 -17.41663 -16.56104
-16.46480 -15.88992 -15.48647 -15.34423 -15.28005 -15.01099 -14.88378 -14.10012
-14.01080 -13.72570 -13.66624 -13.54451 -13.40086 -13.19141 -12.90745 -12.59005
-12.35706 -12.32341 -12.15326 -12.01786 -11.89566 -11.52227 -11.41007 -11.34872
-11.10340 -10.94745 -10.88320 -10.71037 -10.25917 -10.21943 -9.84702 -9.76637
-9.48712 -9.47310 -9.02242 -8.62188 -8.57126 -7.87347 -6.68462 -5.75064
-3.13661 0.53098 1.00665 2.75748 2.83658 2.87689 3.23290 3.39859
3.47184 3.49528 3.58737 4.32014 4.32687 4.52827 4.57398 4.60042
4.66242 4.81150 4.88537 4.92446 5.03873 5.17624 5.22569 5.32791
5.35197 5.42394 5.43896 5.50162 5.61757 5.70864 5.72245 5.81652
5.84741 5.87813 6.01367 6.07734 6.12267 6.21607 6.26897 6.28589
6.44238 6.46364 6.60569 6.83883 6.95744 7.06474 7.28547 7.37336
7.45002 7.50630 7.79296 7.93302 8.25515 8.43069 9.24514 9.87499
10.46367 11.35293
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.021191 B = 0.001820 C = 0.001731
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1321.028772 B =15385.140009 C =16172.113075
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.048 3.952
3 O -0.278 6.278
4 C 0.187 3.813
5 C -0.223 4.223
6 C -0.055 4.055
7 C -0.169 4.169
8 C -0.048 4.048
9 C -0.171 4.171
10 C 0.555 3.445
11 O -0.517 6.517
12 N -0.729 5.729
13 C 0.127 3.873
14 C -0.092 4.092
15 C -0.142 4.142
16 C -0.147 4.147
17 C 0.196 3.804
18 N -0.596 5.596
19 C -0.243 4.243
20 H 0.069 0.931
21 C -0.003 4.003
22 N -0.909 5.909
23 Si 0.904 3.096
24 H -0.278 1.278
25 H -0.291 1.291
26 H -0.290 1.290
27 C 0.143 3.857
28 C -0.091 4.091
29 H 0.068 0.932
30 H 0.076 0.924
31 H 0.069 0.931
32 H 0.061 0.939
33 H 0.061 0.939
34 H 0.133 0.867
35 H 0.129 0.871
36 H 0.130 0.870
37 H 0.133 0.867
38 H 0.395 0.605
39 H 0.069 0.931
40 H 0.069 0.931
41 H 0.066 0.934
42 H 0.066 0.934
43 H 0.091 0.909
44 H 0.038 0.962
45 H 0.090 0.910
46 H 0.253 0.747
47 H 0.024 0.976
48 H 0.056 0.944
49 H 0.062 0.938
50 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.400 -28.776 -3.599 31.160
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.027 4.027
3 O -0.189 6.189
4 C 0.139 3.861
5 C -0.241 4.241
6 C -0.073 4.073
7 C -0.187 4.187
8 C -0.066 4.066
9 C -0.175 4.175
10 C 0.342 3.658
11 O -0.393 6.393
12 N -0.382 5.382
13 C 0.004 3.996
14 C -0.129 4.129
15 C -0.143 4.143
16 C -0.167 4.167
17 C 0.072 3.928
18 N -0.319 5.319
19 C -0.373 4.373
20 H 0.086 0.914
21 C -0.201 4.201
22 N -0.555 5.555
23 Si 0.734 3.266
24 H -0.203 1.203
25 H -0.218 1.218
26 H -0.216 1.216
27 C 0.016 3.984
28 C -0.130 4.130
29 H 0.088 0.912
30 H 0.095 0.905
31 H 0.088 0.912
32 H 0.079 0.921
33 H 0.080 0.920
34 H 0.151 0.849
35 H 0.147 0.853
36 H 0.148 0.852
37 H 0.151 0.849
38 H 0.230 0.770
39 H 0.088 0.912
40 H 0.087 0.913
41 H 0.084 0.916
42 H 0.085 0.915
43 H 0.109 0.891
44 H 0.056 0.944
45 H 0.108 0.892
46 H 0.063 0.937
47 H 0.042 0.958
48 H 0.074 0.926
49 H 0.081 0.919
50 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 10.264 -28.605 -3.465 30.588
hybrid contribution 0.951 0.674 0.111 1.171
sum 11.216 -27.931 -3.354 30.285
Atomic orbital electron populations
1.21745 0.92345 1.02552 1.04172 1.22900 0.96575 0.82100 1.01103
1.86405 1.17636 1.28530 1.86341 1.19035 0.83269 0.92606 0.91221
1.21261 0.94395 0.98047 1.10442 1.21126 0.94267 0.97571 0.94327
1.20992 1.00192 0.92168 1.05358 1.21198 0.91198 0.99585 0.94657
1.19435 0.93652 0.91475 1.12967 1.17973 0.87947 0.82696 0.77187
1.90842 1.14344 1.85827 1.48289 1.46001 1.10357 1.05743 1.76140
1.21422 0.92652 0.82742 1.02811 1.20913 0.97381 0.92566 1.02081
1.20223 1.01331 0.96793 0.95913 1.23114 0.98570 0.98903 0.96074
1.19703 0.94466 0.90725 0.87947 1.44148 1.81209 1.01822 1.04746
1.19229 1.41475 0.81046 0.95508 0.91368 1.24998 0.99664 0.97993
0.97463 1.70034 1.46131 1.34255 1.05055 0.86184 0.77712 0.85220
0.77461 1.20340 1.21792 1.21647 1.20991 0.93264 0.91691 0.92424
1.20793 0.99779 0.98597 0.93838 0.91249 0.90485 0.91239 0.92051
0.92046 0.84884 0.85341 0.85206 0.84937 0.76990 0.91245 0.91268
0.91566 0.91497 0.89077 0.94434 0.89182 0.93716 0.95777 0.92584
0.91936 0.92890
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.11 10.28 37.16 0.38 -0.73 16
2 C 0.05 0.39 5.46 37.16 0.20 0.59 16
3 O -0.28 -3.48 8.21 -40.55 -0.33 -3.81 16
4 C 0.19 2.11 6.70 -38.69 -0.26 1.85 16
5 C -0.22 -1.79 9.03 -39.48 -0.36 -2.14 16
6 C -0.05 -0.36 10.03 -39.54 -0.40 -0.75 16
7 C -0.17 -1.13 10.02 -39.63 -0.40 -1.52 16
8 C -0.05 -0.39 9.53 -39.20 -0.37 -0.76 16
9 C -0.17 -1.97 5.89 -104.85 -0.62 -2.58 16
10 C 0.56 7.85 7.76 -12.47 -0.10 7.75 16
11 O -0.52 -9.41 15.16 -16.59 -0.25 -9.66 16
12 N -0.73 -8.63 5.51 -61.34 -0.34 -8.96 16
13 C 0.13 1.75 5.66 -4.04 -0.02 1.72 16
14 C -0.09 -1.23 5.32 -27.88 -0.15 -1.37 16
15 C -0.14 -2.50 5.11 -100.99 -0.52 -3.02 16
16 C -0.15 -2.91 9.47 -35.78 -0.34 -3.25 16
17 C 0.20 4.83 5.23 -5.10 -0.03 4.80 16
18 N -0.60 -15.36 3.01 -173.56 -0.52 -15.89 16
19 C -0.24 -6.79 9.71 -15.06 -0.15 -6.94 16
20 H 0.07 1.87 7.88 -52.49 -0.41 1.45 16
21 C 0.00 -0.10 5.01 -17.43 -0.09 -0.19 16
22 N -0.91 -26.72 11.08 55.49 0.61 -26.10 16
23 Si 0.90 22.00 29.58 -169.99 -5.03 16.97 16
24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
27 C 0.14 3.09 6.59 -3.44 -0.02 3.07 16
28 C -0.09 -1.65 5.95 -28.09 -0.17 -1.81 16
29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16
30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16
31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
32 H 0.06 0.38 7.66 -51.93 -0.40 -0.01 16
33 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16
34 H 0.13 0.77 6.30 -52.49 -0.33 0.44 16
35 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16
36 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16
37 H 0.13 0.75 6.40 -52.49 -0.34 0.41 16
38 H 0.40 3.39 6.50 -40.82 -0.27 3.13 16
39 H 0.07 1.04 8.11 -51.93 -0.42 0.62 16
40 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16
41 H 0.07 0.82 7.78 -51.93 -0.40 0.42 16
42 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16
43 H 0.09 1.60 7.73 -52.49 -0.41 1.20 16
44 H 0.04 1.00 8.14 -51.92 -0.42 0.57 16
45 H 0.09 2.44 6.41 -51.93 -0.33 2.11 16
46 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16
47 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16
48 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16
49 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16
50 H 0.05 0.84 8.10 -51.93 -0.42 0.42 16
LS Contribution 404.64 15.07 6.10 6.10
Total: -1.00 -34.58 404.64 -11.05 -45.63
By element:
Atomic # 1 Polarization: 8.93 SS G_CDS: -7.90 Total: 1.03 kcal
Atomic # 6 Polarization: -1.91 SS G_CDS: -3.39 Total: -5.30 kcal
Atomic # 7 Polarization: -50.71 SS G_CDS: -0.24 Total: -50.95 kcal
Atomic # 8 Polarization: -12.89 SS G_CDS: -0.58 Total: -13.47 kcal
Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal
Total LS contribution 6.10 Total: 6.10 kcal
Total: -34.58 -11.05 -45.63 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001161805307.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.967 kcal
(2) G-P(sol) polarization free energy of solvation -34.580 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.613 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.048 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.628 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.661 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds