Wall clock time and date at job start Wed Apr 1 2020 03:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.47003 * 2 1 4 4 C 1.35709 * 116.99526 * 179.97438 * 3 2 1 5 5 C 1.38995 * 119.91308 * 359.72569 * 4 3 2 6 6 C 1.37707 * 120.08303 * 179.72309 * 5 4 3 7 7 C 1.39728 * 119.91558 * 0.57228 * 6 5 4 8 8 C 1.47599 * 120.08996 * 179.67998 * 7 6 5 9 9 O 1.21588 * 119.99738 * 180.02562 * 8 7 6 10 10 N 1.34778 * 120.00218 * 0.02675 * 8 7 6 11 11 C 1.46488 * 120.00149 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47291 * 179.97438 * 11 10 8 13 13 C 1.50698 * 109.47331 * 179.97438 * 12 11 10 14 14 C 1.29460 * 117.68877 * 95.00011 * 13 12 11 15 15 C 1.50331 * 123.64544 * 180.85751 * 14 13 12 16 16 N 1.47005 * 109.16632 * 349.02229 * 15 14 13 17 17 C 1.36938 * 121.37365 * 222.96672 * 16 15 14 18 18 H 1.07994 * 120.00120 * 155.98328 * 17 16 15 19 19 C 1.38813 * 119.99919 * 335.98275 * 17 16 15 20 20 N 1.31623 * 120.00052 * 344.49201 * 19 17 16 21 21 Si 1.86801 * 119.99780 * 164.49734 * 19 17 16 22 22 H 1.48502 * 109.47142 * 94.45405 * 21 19 17 23 23 H 1.48500 * 109.47064 * 214.45307 * 21 19 17 24 24 H 1.48502 * 109.46987 * 334.44946 * 21 19 17 25 25 C 1.47339 * 117.25017 * 42.95246 * 16 15 14 26 26 C 1.49965 * 117.69987 * 274.73950 * 13 12 11 27 27 C 1.39736 * 119.82189 * 359.70649 * 7 6 5 28 28 C 1.37699 * 119.91270 * 359.97438 * 27 7 6 29 29 H 1.08997 * 109.47224 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47166 * 300.00319 * 1 2 3 31 31 H 1.09005 * 109.46959 * 59.99527 * 1 2 3 32 32 H 1.08998 * 109.46810 * 239.99996 * 2 1 3 33 33 H 1.08999 * 109.46632 * 120.00211 * 2 1 3 34 34 H 1.07993 * 119.95664 * 0.02562 * 5 4 3 35 35 H 1.08000 * 120.04178 * 180.27993 * 6 5 4 36 36 H 0.97004 * 119.99229 * 359.97438 * 10 8 7 37 37 H 1.09006 * 109.47215 * 299.99316 * 11 10 8 38 38 H 1.08998 * 109.47501 * 59.99442 * 11 10 8 39 39 H 1.08998 * 109.46837 * 300.00197 * 12 11 10 40 40 H 1.09007 * 109.47006 * 59.99720 * 12 11 10 41 41 H 1.07998 * 118.17823 * 0.88068 * 14 13 12 42 42 H 1.08999 * 109.51771 * 108.93399 * 15 14 13 43 43 H 1.08995 * 109.51959 * 229.11585 * 15 14 13 44 44 H 0.97003 * 119.99579 * 180.02562 * 20 19 17 45 45 H 1.09000 * 109.78088 * 57.80180 * 25 16 15 46 46 H 1.08994 * 109.77896 * 178.61383 * 25 16 15 47 47 H 1.08997 * 109.31383 * 281.29666 * 26 13 12 48 48 H 1.09000 * 109.31102 * 40.71682 * 26 13 12 49 49 H 1.08007 * 120.04602 * 179.97438 * 27 7 6 50 50 H 1.07997 * 119.95647 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3517 1.5250 0.0005 5 6 4.1967 0.4214 0.0068 6 6 5.5624 0.5977 0.0016 7 6 6.0985 1.8880 0.0021 8 6 7.5618 2.0814 0.0037 9 8 8.0265 3.2050 0.0046 10 7 8.3828 1.0125 0.0041 11 6 9.8351 1.2045 0.0063 12 6 10.5297 -0.1588 0.0070 13 6 12.0237 0.0386 0.0085 14 6 12.6320 0.0184 1.1512 15 6 14.1134 0.2193 1.3098 16 7 14.7516 0.1701 -0.0136 17 6 15.9230 -0.5098 -0.2153 18 1 16.1766 -0.8675 -1.2022 19 6 16.7845 -0.7391 0.8487 20 7 16.6440 -0.0600 1.9674 21 14 18.1432 -2.0115 0.6928 22 1 19.3993 -1.3445 0.2653 23 1 18.3556 -2.6723 2.0056 24 1 17.7548 -3.0293 -0.3165 25 6 14.0786 0.8823 -1.1139 26 6 12.7018 0.2388 -1.3140 27 6 5.2456 2.9949 0.0017 28 6 3.8811 2.8103 0.0002 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.7816 -0.5755 0.0109 35 1 6.2183 -0.2603 0.0020 36 1 8.0120 0.1162 0.0038 37 1 10.1292 1.7620 -0.8830 38 1 10.1268 1.7610 0.8970 39 1 10.2355 -0.7160 0.8964 40 1 10.2381 -0.7156 -0.8836 41 1 12.0425 -0.1527 2.0398 42 1 14.3021 1.1894 1.7696 43 1 14.5223 -0.5697 1.9410 44 1 17.2463 -0.2201 2.7108 45 1 13.9639 1.9352 -0.8562 46 1 14.6649 0.7873 -2.0278 47 1 12.8188 -0.7254 -1.8087 48 1 12.0892 0.8891 -1.9384 49 1 5.6561 3.9939 0.0025 50 1 3.2212 3.6653 0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161805829.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:53 Heat of formation + Delta-G solvation = -17.746170 kcal Electronic energy + Delta-G solvation = -28342.202393 eV Core-core repulsion = 24335.323470 eV Total energy + Delta-G solvation = -4006.878922 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.82634 -39.72952 -37.97901 -37.44486 -35.44583 -33.63379 -32.59693 -31.55175 -31.29385 -30.36368 -29.73590 -28.46761 -25.51789 -24.57788 -23.81732 -23.01238 -22.53998 -21.94225 -20.98000 -20.53394 -18.93443 -17.85175 -17.57066 -16.71197 -16.67792 -15.96427 -15.61401 -15.43766 -15.21843 -14.96455 -14.43506 -14.17646 -14.13207 -14.01386 -13.78210 -13.71301 -13.54441 -13.30916 -13.21675 -12.74464 -12.63532 -12.38832 -12.23468 -12.16961 -11.97724 -11.56471 -11.40714 -11.27452 -11.25193 -10.98938 -10.89754 -10.70516 -10.32112 -10.26937 -10.03569 -9.79026 -9.52642 -9.52581 -9.17597 -8.65813 -8.63385 -7.90341 -6.69997 -5.76684 -3.15146 0.55043 0.89072 2.61550 2.64243 2.82899 3.17191 3.38948 3.45804 3.48163 3.54043 4.18993 4.33837 4.34291 4.46311 4.51523 4.52775 4.65440 4.76789 4.89808 5.02081 5.12357 5.17240 5.20865 5.26703 5.29439 5.42051 5.45308 5.50709 5.57963 5.66768 5.69057 5.79063 5.82095 5.96887 6.02716 6.08104 6.17200 6.21273 6.23756 6.36987 6.41988 6.57974 6.81401 6.85741 6.93422 7.25790 7.33400 7.38266 7.43956 7.77281 7.90566 8.10181 8.41456 9.22929 9.85946 10.44714 11.33722 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.029094 B = 0.001521 C = 0.001486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.159747 B =18404.208477 C =18839.132620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.313 6.313 4 C 0.154 3.846 5 C -0.218 4.218 6 C -0.044 4.044 7 C -0.172 4.172 8 C 0.558 3.442 9 O -0.538 6.538 10 N -0.726 5.726 11 C 0.124 3.876 12 C -0.092 4.092 13 C -0.143 4.143 14 C -0.146 4.146 15 C 0.196 3.804 16 N -0.596 5.596 17 C -0.245 4.245 18 H 0.068 0.932 19 C -0.002 4.002 20 N -0.909 5.909 21 Si 0.904 3.096 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.143 3.857 26 C -0.091 4.091 27 C -0.019 4.019 28 C -0.161 4.161 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.397 0.603 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.091 0.909 42 H 0.038 0.962 43 H 0.090 0.910 44 H 0.253 0.747 45 H 0.024 0.976 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.052 0.948 49 H 0.144 0.856 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.201 -1.141 -3.701 32.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.226 6.226 4 C 0.108 3.892 5 C -0.237 4.237 6 C -0.063 4.063 7 C -0.176 4.176 8 C 0.346 3.654 9 O -0.416 6.416 10 N -0.378 5.378 11 C 0.001 3.999 12 C -0.129 4.129 13 C -0.144 4.144 14 C -0.166 4.166 15 C 0.072 3.928 16 N -0.319 5.319 17 C -0.374 4.374 18 H 0.086 0.914 19 C -0.200 4.200 20 N -0.555 5.555 21 Si 0.734 3.266 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.016 3.984 26 C -0.130 4.130 27 C -0.038 4.038 28 C -0.180 4.180 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.232 0.768 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.056 0.944 43 H 0.108 0.892 44 H 0.063 0.937 45 H 0.042 0.958 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.071 0.929 49 H 0.162 0.838 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -31.876 -0.228 -3.555 32.074 hybrid contribution 0.548 -1.471 0.098 1.573 sum -31.328 -1.699 -3.458 31.564 Atomic orbital electron populations 1.21789 0.92476 1.03074 1.03674 1.22870 0.96136 0.81602 1.01724 1.86054 1.18941 1.29813 1.87810 1.19269 0.82357 0.94198 0.93398 1.21169 0.94002 0.98356 1.10156 1.21098 0.94679 0.96174 0.94326 1.19899 0.93300 0.94109 1.10242 1.18147 0.86086 0.84761 0.76452 1.90799 1.77440 1.23545 1.49823 1.46014 1.07506 1.08856 1.75422 1.21467 0.77357 0.98074 1.02958 1.20913 0.94465 0.95464 1.02101 1.20223 0.92410 1.05795 0.95942 1.23126 0.99830 0.97566 0.96031 1.19702 0.84512 1.00605 0.88026 1.44132 1.24028 1.58942 1.04776 1.19185 0.95361 1.27433 0.95468 0.91430 1.24985 0.97796 0.99773 0.97410 1.70025 1.39567 1.40923 1.04950 0.86255 0.81961 0.81485 0.76946 1.21505 1.21607 1.20524 1.20993 0.91180 0.93824 0.92391 1.20790 0.97882 1.00504 0.93830 1.21116 0.91453 0.99311 0.91896 1.20433 0.95038 0.94994 1.07487 0.90174 0.91399 0.91411 0.91705 0.91698 0.84858 0.85260 0.76826 0.91093 0.91117 0.91556 0.91485 0.89082 0.94414 0.89175 0.93668 0.95768 0.92567 0.91934 0.92901 0.83781 0.84422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 10.28 37.16 0.38 -0.12 16 2 C 0.05 0.24 5.45 37.16 0.20 0.44 16 3 O -0.31 -2.41 10.12 -18.83 -0.19 -2.60 16 4 C 0.15 1.27 6.70 -39.02 -0.26 1.01 16 5 C -0.22 -1.56 9.01 -39.49 -0.36 -1.92 16 6 C -0.04 -0.34 9.53 -39.22 -0.37 -0.72 16 7 C -0.17 -1.77 5.87 -104.96 -0.62 -2.39 16 8 C 0.56 7.19 7.76 -12.44 -0.10 7.10 16 9 O -0.54 -9.04 16.34 5.29 0.09 -8.96 16 10 N -0.73 -7.99 5.51 -61.33 -0.34 -8.33 16 11 C 0.12 1.63 5.66 -4.05 -0.02 1.61 16 12 C -0.09 -1.18 5.32 -27.88 -0.15 -1.33 16 13 C -0.14 -2.47 5.11 -101.00 -0.52 -2.98 16 14 C -0.15 -2.84 9.47 -35.78 -0.34 -3.18 16 15 C 0.20 4.77 5.23 -5.10 -0.03 4.74 16 16 N -0.60 -15.19 3.01 -173.56 -0.52 -15.71 16 17 C -0.25 -6.80 9.71 -15.06 -0.15 -6.94 16 18 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 19 C 0.00 -0.05 5.01 -17.43 -0.09 -0.14 16 20 N -0.91 -26.51 11.08 55.49 0.61 -25.90 16 21 Si 0.90 21.81 29.58 -169.99 -5.03 16.79 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.14 3.05 6.59 -3.43 -0.02 3.02 16 26 C -0.09 -1.62 5.95 -28.09 -0.17 -1.78 16 27 C -0.02 -0.18 9.58 -39.22 -0.38 -0.56 16 28 C -0.16 -1.37 9.97 -39.50 -0.39 -1.77 16 29 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 33 H 0.06 0.24 7.64 -51.93 -0.40 -0.15 16 34 H 0.13 0.64 6.28 -52.49 -0.33 0.31 16 35 H 0.13 0.69 6.39 -52.49 -0.34 0.35 16 36 H 0.40 3.13 6.49 -40.82 -0.27 2.87 16 37 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.07 0.79 7.78 -51.93 -0.40 0.39 16 40 H 0.07 0.78 8.11 -51.93 -0.42 0.35 16 41 H 0.09 1.57 7.73 -52.49 -0.41 1.16 16 42 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.09 2.42 6.41 -51.93 -0.33 2.08 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 49 H 0.14 1.40 7.64 -52.48 -0.40 1.00 16 50 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 406.72 15.07 6.13 6.13 Total: -1.00 -33.38 406.72 -10.49 -43.87 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.88 Total: 0.62 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -3.36 Total: -5.90 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.24 Total: -49.94 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -0.10 Total: -11.56 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.38 -10.49 -43.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161805829.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.124 kcal (2) G-P(sol) polarization free energy of solvation -33.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds