Wall clock time and date at job start Wed Apr 1 2020 03:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.47003 * 2 1 4 4 C 1.35709 * 116.99526 * 179.97438 * 3 2 1 5 5 C 1.38995 * 119.91308 * 359.72569 * 4 3 2 6 6 C 1.37707 * 120.08303 * 179.72309 * 5 4 3 7 7 C 1.39728 * 119.91558 * 0.57228 * 6 5 4 8 8 C 1.47599 * 120.08996 * 179.67998 * 7 6 5 9 9 O 1.21588 * 119.99738 * 180.02562 * 8 7 6 10 10 N 1.34778 * 120.00218 * 0.02675 * 8 7 6 11 11 C 1.46488 * 120.00149 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47291 * 179.97438 * 11 10 8 13 13 C 1.50698 * 109.47331 * 179.97438 * 12 11 10 14 14 C 1.29460 * 117.68877 * 95.00011 * 13 12 11 15 15 C 1.50331 * 123.64544 * 180.85751 * 14 13 12 16 16 N 1.47005 * 109.16632 * 349.02229 * 15 14 13 17 17 C 1.36938 * 121.37365 * 222.96672 * 16 15 14 18 18 H 1.07994 * 120.00120 * 155.98328 * 17 16 15 19 19 C 1.38813 * 119.99919 * 335.98275 * 17 16 15 20 20 N 1.31623 * 120.00052 * 344.49201 * 19 17 16 21 21 Si 1.86801 * 119.99780 * 164.49734 * 19 17 16 22 22 H 1.48502 * 109.47142 * 94.45405 * 21 19 17 23 23 H 1.48500 * 109.47064 * 214.45307 * 21 19 17 24 24 H 1.48502 * 109.46987 * 334.44946 * 21 19 17 25 25 C 1.47339 * 117.25017 * 42.95246 * 16 15 14 26 26 C 1.49965 * 117.69987 * 274.73950 * 13 12 11 27 27 C 1.39736 * 119.82189 * 359.70649 * 7 6 5 28 28 C 1.37699 * 119.91270 * 359.97438 * 27 7 6 29 29 H 1.08997 * 109.47224 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47166 * 300.00319 * 1 2 3 31 31 H 1.09005 * 109.46959 * 59.99527 * 1 2 3 32 32 H 1.08998 * 109.46810 * 239.99996 * 2 1 3 33 33 H 1.08999 * 109.46632 * 120.00211 * 2 1 3 34 34 H 1.07993 * 119.95664 * 0.02562 * 5 4 3 35 35 H 1.08000 * 120.04178 * 180.27993 * 6 5 4 36 36 H 0.97004 * 119.99229 * 359.97438 * 10 8 7 37 37 H 1.09006 * 109.47215 * 299.99316 * 11 10 8 38 38 H 1.08998 * 109.47501 * 59.99442 * 11 10 8 39 39 H 1.08998 * 109.46837 * 300.00197 * 12 11 10 40 40 H 1.09007 * 109.47006 * 59.99720 * 12 11 10 41 41 H 1.07998 * 118.17823 * 0.88068 * 14 13 12 42 42 H 1.08999 * 109.51771 * 108.93399 * 15 14 13 43 43 H 1.08995 * 109.51959 * 229.11585 * 15 14 13 44 44 H 0.97003 * 119.99579 * 180.02562 * 20 19 17 45 45 H 1.09000 * 109.78088 * 57.80180 * 25 16 15 46 46 H 1.08994 * 109.77896 * 178.61383 * 25 16 15 47 47 H 1.08997 * 109.31383 * 281.29666 * 26 13 12 48 48 H 1.09000 * 109.31102 * 40.71682 * 26 13 12 49 49 H 1.08007 * 120.04602 * 179.97438 * 27 7 6 50 50 H 1.07997 * 119.95647 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3517 1.5250 0.0005 5 6 4.1967 0.4214 0.0068 6 6 5.5624 0.5977 0.0016 7 6 6.0985 1.8880 0.0021 8 6 7.5618 2.0814 0.0037 9 8 8.0265 3.2050 0.0046 10 7 8.3828 1.0125 0.0041 11 6 9.8351 1.2045 0.0063 12 6 10.5297 -0.1588 0.0070 13 6 12.0237 0.0386 0.0085 14 6 12.6320 0.0184 1.1512 15 6 14.1134 0.2193 1.3098 16 7 14.7516 0.1701 -0.0136 17 6 15.9230 -0.5098 -0.2153 18 1 16.1766 -0.8675 -1.2022 19 6 16.7845 -0.7391 0.8487 20 7 16.6440 -0.0600 1.9674 21 14 18.1432 -2.0115 0.6928 22 1 19.3993 -1.3445 0.2653 23 1 18.3556 -2.6723 2.0056 24 1 17.7548 -3.0293 -0.3165 25 6 14.0786 0.8823 -1.1139 26 6 12.7018 0.2388 -1.3140 27 6 5.2456 2.9949 0.0017 28 6 3.8811 2.8103 0.0002 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.7816 -0.5755 0.0109 35 1 6.2183 -0.2603 0.0020 36 1 8.0120 0.1162 0.0038 37 1 10.1292 1.7620 -0.8830 38 1 10.1268 1.7610 0.8970 39 1 10.2355 -0.7160 0.8964 40 1 10.2381 -0.7156 -0.8836 41 1 12.0425 -0.1527 2.0398 42 1 14.3021 1.1894 1.7696 43 1 14.5223 -0.5697 1.9410 44 1 17.2463 -0.2201 2.7108 45 1 13.9639 1.9352 -0.8562 46 1 14.6649 0.7873 -2.0278 47 1 12.8188 -0.7254 -1.8087 48 1 12.0892 0.8891 -1.9384 49 1 5.6561 3.9939 0.0025 50 1 3.2212 3.6653 0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161805829.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:52 Heat of formation + Delta-G solvation = -37.584739 kcal Electronic energy + Delta-G solvation = -28343.062658 eV Core-core repulsion = 24335.323470 eV Total energy + Delta-G solvation = -4007.739187 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.50496 -40.55697 -39.47068 -38.17786 -36.75523 -35.16829 -33.34989 -32.86678 -31.99364 -31.53057 -31.09533 -29.77503 -27.15027 -25.29517 -24.71313 -24.38170 -23.82836 -22.69277 -22.40485 -21.47555 -19.53182 -19.44231 -18.62372 -17.70805 -17.28163 -17.09238 -17.00359 -16.51357 -16.40709 -15.99398 -15.68417 -15.47191 -15.29343 -15.06810 -14.96648 -14.64864 -14.35211 -14.33215 -14.21894 -13.86099 -13.72193 -13.37592 -13.21057 -13.20309 -12.91323 -12.82913 -12.78359 -12.63948 -12.57148 -12.35732 -12.16843 -11.88983 -11.77525 -11.67124 -11.65622 -11.28425 -11.02178 -10.67911 -10.18653 -10.13449 -9.48182 -9.29277 -8.74582 -7.87724 -5.29819 -0.15175 0.29108 1.42145 1.47022 1.47885 1.58372 1.80732 2.13505 2.20231 2.51522 2.81326 3.29200 3.65823 3.67920 3.73355 3.83993 3.97528 4.08161 4.08368 4.11244 4.15285 4.20303 4.30521 4.37075 4.39849 4.52069 4.56359 4.59389 4.69348 4.85087 4.87259 4.91668 4.93162 4.96046 4.98271 5.05757 5.09840 5.17258 5.18459 5.24393 5.28354 5.33178 5.38878 5.42674 5.51059 5.61261 5.61835 5.88733 6.29229 6.33991 6.34684 6.52678 7.13550 7.19480 7.83704 8.38725 9.20965 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.029094 B = 0.001521 C = 0.001486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.159747 B =18404.208477 C =18839.132620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.042 3.958 3 O -0.327 6.327 4 C 0.152 3.848 5 C -0.214 4.214 6 C -0.035 4.035 7 C -0.193 4.193 8 C 0.556 3.444 9 O -0.588 6.588 10 N -0.710 5.710 11 C 0.132 3.868 12 C -0.078 4.078 13 C -0.121 4.121 14 C -0.174 4.174 15 C 0.207 3.793 16 N -0.615 5.615 17 C -0.259 4.259 18 H 0.071 0.929 19 C -0.056 4.056 20 N -0.942 5.942 21 Si 0.971 3.029 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.268 1.268 25 C 0.134 3.866 26 C -0.087 4.087 27 C -0.031 4.031 28 C -0.170 4.170 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.163 0.837 35 H 0.159 0.841 36 H 0.415 0.585 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.001 0.999 43 H 0.055 0.945 44 H 0.249 0.751 45 H 0.017 0.983 46 H 0.059 0.941 47 H 0.070 0.930 48 H 0.085 0.915 49 H 0.133 0.867 50 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.870 -3.875 -5.050 35.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.033 4.033 3 O -0.240 6.240 4 C 0.106 3.894 5 C -0.233 4.233 6 C -0.053 4.053 7 C -0.196 4.196 8 C 0.345 3.655 9 O -0.470 6.470 10 N -0.363 5.363 11 C 0.008 3.992 12 C -0.116 4.116 13 C -0.122 4.122 14 C -0.193 4.193 15 C 0.081 3.919 16 N -0.339 5.339 17 C -0.389 4.389 18 H 0.089 0.911 19 C -0.251 4.251 20 N -0.589 5.589 21 Si 0.799 3.201 22 H -0.213 1.213 23 H -0.219 1.219 24 H -0.193 1.193 25 C 0.009 3.991 26 C -0.126 4.126 27 C -0.050 4.050 28 C -0.188 4.188 29 H 0.118 0.882 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.181 0.819 35 H 0.176 0.824 36 H 0.254 0.746 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.113 0.887 41 H 0.131 0.869 42 H 0.019 0.981 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.035 0.965 46 H 0.077 0.923 47 H 0.088 0.912 48 H 0.103 0.897 49 H 0.150 0.850 50 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -34.588 -3.001 -4.932 35.067 hybrid contribution 1.259 -0.579 0.441 1.454 sum -33.329 -3.580 -4.491 33.820 Atomic orbital electron populations 1.21825 0.91745 1.04209 1.03148 1.23175 0.96810 0.80346 1.02931 1.86055 1.18555 1.31930 1.87500 1.19434 0.82980 0.94377 0.92641 1.21480 0.93559 0.99344 1.08883 1.21366 0.95435 0.95762 0.92766 1.19786 0.91619 0.95523 1.12672 1.18574 0.87268 0.84245 0.75381 1.90772 1.78414 1.25513 1.52297 1.45780 1.06417 1.09540 1.74553 1.21206 0.78646 0.97798 1.01534 1.20809 0.90645 0.95614 1.04490 1.20579 0.95036 1.01806 0.94729 1.22829 0.96901 1.01419 0.98183 1.19349 0.87855 0.97565 0.87084 1.44424 1.24035 1.59435 1.05996 1.19555 0.96191 1.27434 0.95684 0.91085 1.25798 1.00366 1.01721 0.97199 1.70207 1.40589 1.42466 1.05606 0.85200 0.78971 0.79094 0.76823 1.21319 1.21863 1.19274 1.21196 0.93206 0.93482 0.91221 1.20746 0.95904 1.01130 0.94771 1.21103 0.92139 0.99028 0.92699 1.20526 0.94612 0.95981 1.07693 0.88195 0.91965 0.91927 0.90391 0.90453 0.81936 0.82371 0.74622 0.92193 0.93218 0.89620 0.88660 0.86864 0.98128 0.92653 0.94167 0.96516 0.92257 0.91160 0.89673 0.84953 0.83619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 10.28 71.98 0.74 0.08 16 2 C 0.04 0.26 5.45 71.98 0.39 0.66 16 3 O -0.33 -4.37 10.12 -90.29 -0.91 -5.29 16 4 C 0.15 2.21 6.70 22.63 0.15 2.36 16 5 C -0.21 -2.34 9.01 22.33 0.20 -2.13 16 6 C -0.03 -0.43 9.53 22.50 0.21 -0.21 16 7 C -0.19 -3.73 5.87 -20.08 -0.12 -3.85 16 8 C 0.56 13.85 7.76 86.71 0.67 14.52 16 9 O -0.59 -20.20 16.34 -3.99 -0.07 -20.26 16 10 N -0.71 -13.81 5.51 -466.22 -2.57 -16.38 16 11 C 0.13 3.17 5.66 86.38 0.49 3.66 16 12 C -0.08 -1.71 5.32 29.85 0.16 -1.55 16 13 C -0.12 -3.90 5.11 -15.15 -0.08 -3.98 16 14 C -0.17 -6.72 9.47 27.10 0.26 -6.46 16 15 C 0.21 10.47 5.23 85.42 0.45 10.92 16 16 N -0.61 -32.06 3.01 -703.04 -2.11 -34.17 16 17 C -0.26 -14.58 9.71 84.03 0.82 -13.77 16 18 H 0.07 3.86 7.88 -2.91 -0.02 3.83 16 19 C -0.06 -3.21 5.01 84.86 0.43 -2.79 16 20 N -0.94 -57.09 11.08 21.65 0.24 -56.85 16 21 Si 0.97 45.52 29.58 68.60 2.03 47.55 16 22 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 25 C 0.13 5.71 6.59 86.32 0.57 6.28 16 26 C -0.09 -2.88 5.95 29.71 0.18 -2.71 16 27 C -0.03 -0.60 9.58 22.50 0.22 -0.39 16 28 C -0.17 -2.78 9.97 22.33 0.22 -2.56 16 29 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 32 H 0.08 0.30 7.66 -2.39 -0.02 0.28 16 33 H 0.08 0.31 7.64 -2.39 -0.02 0.29 16 34 H 0.16 0.78 6.28 -2.91 -0.02 0.76 16 35 H 0.16 0.92 6.39 -2.91 -0.02 0.90 16 36 H 0.42 4.83 6.49 -92.71 -0.60 4.23 16 37 H 0.06 1.60 8.11 -2.38 -0.02 1.58 16 38 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.09 1.64 7.78 -2.39 -0.02 1.63 16 40 H 0.09 1.66 8.11 -2.38 -0.02 1.64 16 41 H 0.11 3.80 7.73 -2.91 -0.02 3.78 16 42 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 43 H 0.06 3.13 6.41 -2.39 -0.02 3.11 16 44 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 45 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.06 2.43 7.96 -2.39 -0.02 2.41 16 47 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 48 H 0.08 2.33 8.10 -2.39 -0.02 2.31 16 49 H 0.13 2.79 7.64 -2.91 -0.02 2.76 16 50 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -76.54 406.72 2.90 -73.64 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.34 Total: 13.67 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 5.95 Total: -1.91 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -4.44 Total: -107.40 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.98 Total: -25.55 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -76.54 2.90 -73.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161805829.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.056 kcal (2) G-P(sol) polarization free energy of solvation -76.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds