Wall clock time and date at job start Wed Apr 1 2020 03:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.47139 * 2 1 4 4 C 1.42901 * 113.99873 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47321 * 179.97438 * 4 3 2 6 6 C 1.52992 * 109.47334 * 179.97438 * 5 4 3 7 7 N 1.46897 * 109.47403 * 179.97438 * 6 5 4 8 8 C 1.46900 * 111.00757 * 179.97438 * 7 6 5 9 9 C 1.52986 * 109.47605 * 174.36323 * 8 7 6 10 10 C 1.53000 * 115.55328 * 278.20449 * 9 8 7 11 11 C 1.53000 * 109.47141 * 294.84367 * 10 9 8 12 12 N 1.46497 * 109.47319 * 178.37977 * 11 10 9 13 13 C 1.34785 * 120.00125 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99685 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99885 * 180.02562 * 13 12 11 16 16 S 1.80997 * 109.46866 * 180.02562 * 15 13 12 17 17 C 1.76202 * 100.00028 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99651 * 0.02562 * 17 16 15 19 19 C 1.38800 * 119.99886 * 179.97438 * 17 16 15 20 20 N 1.31621 * 120.00297 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99859 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46677 * 60.00537 * 21 19 17 23 23 H 1.48494 * 109.47229 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47344 * 300.00635 * 21 19 17 25 25 C 1.53001 * 117.50104 * 132.49502 * 9 8 7 26 26 C 1.53002 * 60.00100 * 252.50874 * 25 9 8 27 27 H 1.09002 * 109.47087 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46860 * 300.00162 * 1 2 3 29 29 H 1.09000 * 109.47043 * 60.00409 * 1 2 3 30 30 H 1.09006 * 109.47066 * 239.99653 * 2 1 3 31 31 H 1.09000 * 109.46995 * 120.00378 * 2 1 3 32 32 H 1.09003 * 109.47233 * 60.00085 * 4 3 2 33 33 H 1.08995 * 109.47107 * 299.99937 * 4 3 2 34 34 H 1.09003 * 109.46860 * 59.99902 * 5 4 3 35 35 H 1.08995 * 109.47015 * 300.00038 * 5 4 3 36 36 H 1.09005 * 109.47031 * 300.00047 * 6 5 4 37 37 H 1.09003 * 109.47136 * 60.00182 * 6 5 4 38 38 H 1.00898 * 110.99780 * 56.04348 * 7 6 5 39 39 H 1.09002 * 109.46809 * 294.36788 * 8 7 6 40 40 H 1.09004 * 109.46654 * 54.35581 * 8 7 6 41 41 H 1.09003 * 109.47187 * 54.83959 * 10 9 8 42 42 H 1.09003 * 109.47868 * 174.83964 * 10 9 8 43 43 H 1.08998 * 109.47097 * 298.38254 * 11 10 9 44 44 H 1.09000 * 109.47297 * 58.37754 * 11 10 9 45 45 H 0.97000 * 120.00121 * 0.02562 * 12 11 10 46 46 H 1.08998 * 109.47369 * 300.00334 * 15 13 12 47 47 H 1.09007 * 109.47071 * 60.00323 * 15 13 12 48 48 H 0.96996 * 120.00562 * 179.97438 * 20 19 17 49 49 H 1.09000 * 117.49855 * 0.02562 * 25 9 8 50 50 H 1.09004 * 117.50007 * 145.02084 * 25 9 8 51 51 H 1.08994 * 117.49715 * 252.50525 * 26 25 9 52 52 H 1.09002 * 117.49477 * 107.49005 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 -0.0012 6 6 5.3506 3.0591 -0.0012 7 7 5.7295 4.4784 -0.0023 8 6 7.1903 4.6335 -0.0017 9 6 7.5460 6.1145 -0.1447 10 6 7.5228 6.6640 -1.5724 11 6 8.6165 5.9841 -2.3985 12 7 8.5692 6.4819 -3.7754 13 6 9.4461 6.0208 -4.6893 14 8 10.2740 5.1934 -4.3717 15 6 9.3978 6.5335 -6.1056 16 16 10.6915 5.7289 -7.0828 17 6 10.4133 6.4922 -8.6463 18 1 9.6233 7.2200 -8.7589 19 6 11.2100 6.1588 -9.7329 20 7 12.1730 5.2722 -9.5955 21 14 10.9145 6.9675 -11.3907 22 1 11.0814 8.4374 -11.2611 23 1 11.8923 6.4441 -12.3781 24 1 9.5354 6.6645 -11.8505 25 6 8.5910 6.6860 0.8157 26 6 7.1158 7.0564 0.9818 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8333 0.9766 -0.8908 33 1 3.8340 0.9764 0.8891 34 1 3.4230 3.4221 0.8889 35 1 3.4224 3.4216 -0.8911 36 1 5.7533 2.5759 0.8891 37 1 5.7534 2.5752 -0.8910 38 1 5.3143 4.9640 0.7785 39 1 7.5958 4.2511 0.9350 40 1 7.6152 4.0754 -0.8362 41 1 6.5504 6.4645 -2.0227 42 1 7.6994 7.7394 -1.5509 43 1 9.5912 6.2073 -1.9646 44 1 8.4562 4.9059 -2.3962 45 1 7.9073 7.1440 -4.0293 46 1 8.4232 6.3103 -6.5397 47 1 9.5581 7.6117 -6.1074 48 1 12.7295 5.0389 -10.3549 49 1 9.0254 6.0066 1.5491 50 1 9.2623 7.4535 0.4304 51 1 6.8167 8.0674 0.7058 52 1 6.5794 6.6207 1.8247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163491221.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:49 Heat of formation + Delta-G solvation = -81.595484 kcal Electronic energy + Delta-G solvation = -26448.641264 eV Core-core repulsion = 22574.437579 eV Total energy + Delta-G solvation = -3874.203685 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.52068 -38.78059 -38.49564 -36.20185 -34.60413 -32.77411 -32.40408 -30.94783 -30.75573 -28.55450 -26.71381 -25.46432 -24.00172 -23.51657 -23.21051 -22.38996 -21.74907 -20.39692 -19.05026 -17.77150 -17.18654 -16.90983 -16.47449 -16.03218 -15.96543 -15.74401 -15.33232 -15.20446 -14.78619 -14.74024 -14.52029 -14.22984 -13.89366 -13.75120 -13.37482 -13.09978 -13.00766 -12.62862 -12.55456 -12.27427 -12.13434 -12.08238 -12.01400 -11.90299 -11.78898 -11.47805 -11.38555 -11.29406 -11.15527 -11.01887 -11.01612 -10.74913 -10.39798 -10.06506 -10.02036 -9.79075 -9.33184 -9.03739 -8.81691 -8.76134 -8.20595 -6.46860 -6.18916 -3.89282 3.04264 3.09803 3.16920 3.25489 3.29321 3.32671 3.42711 3.78524 3.95565 4.23266 4.39225 4.44198 4.51811 4.60101 4.62998 4.67250 4.70930 4.79833 4.88124 4.93013 4.99545 5.05571 5.08743 5.14897 5.16129 5.24674 5.27185 5.32292 5.34128 5.35917 5.45382 5.45988 5.54517 5.62395 5.66084 5.69416 5.71539 5.80430 5.82169 5.85953 5.92827 6.06499 6.10982 6.18578 6.60512 6.70944 6.78980 7.00221 7.61860 7.79037 8.37696 8.68628 9.26198 10.88471 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008906 B = 0.001685 C = 0.001467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3143.341591 B =16608.514783 C =19081.872319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.390 6.390 4 C 0.064 3.936 5 C -0.116 4.116 6 C 0.061 3.939 7 N -0.683 5.683 8 C 0.092 3.908 9 C -0.112 4.112 10 C -0.088 4.088 11 C 0.125 3.875 12 N -0.739 5.739 13 C 0.531 3.469 14 O -0.520 6.520 15 C -0.153 4.153 16 S -0.061 6.061 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.173 4.173 26 C -0.169 4.169 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.029 0.971 37 H 0.076 0.924 38 H 0.340 0.660 39 H 0.032 0.968 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.397 0.603 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.269 0.731 49 H 0.093 0.907 50 H 0.098 0.902 51 H 0.096 0.904 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.488 -3.149 25.724 32.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.310 6.310 4 C -0.014 4.014 5 C -0.154 4.154 6 C -0.068 4.068 7 N -0.314 5.314 8 C -0.036 4.036 9 C -0.113 4.113 10 C -0.125 4.125 11 C 0.001 3.999 12 N -0.393 5.393 13 C 0.317 3.683 14 O -0.394 6.394 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.210 4.210 26 C -0.206 4.206 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.048 0.952 37 H 0.095 0.905 38 H 0.158 0.842 39 H 0.050 0.950 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.231 0.769 46 H 0.108 0.892 47 H 0.107 0.893 48 H 0.078 0.922 49 H 0.112 0.888 50 H 0.116 0.884 51 H 0.114 0.886 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.118 -4.438 25.484 31.581 hybrid contribution -1.047 1.277 -0.574 1.748 sum -19.164 -3.161 24.909 31.587 Atomic orbital electron populations 1.21748 0.93673 1.02299 1.03196 1.22464 0.95678 0.83735 1.00101 1.87874 1.21156 1.26524 1.95451 1.22425 0.81263 0.97425 1.00236 1.21442 0.95045 0.94869 1.04000 1.21835 0.94731 0.89308 1.00935 1.60300 1.09334 1.11491 1.50264 1.21506 0.87653 0.93719 1.00758 1.21264 1.04258 0.93982 0.91768 1.21228 0.99623 0.99355 0.92321 1.21219 0.98772 0.98745 0.81186 1.46004 1.36935 1.46280 1.10119 1.20294 0.80173 0.81210 0.86637 1.90694 1.36321 1.31898 1.80484 1.23533 1.06946 1.04748 0.95184 1.85379 1.38343 1.55381 1.04319 1.22839 1.21311 1.28839 0.95442 0.90982 1.24983 0.94470 0.95066 0.99013 1.70004 1.18198 1.30456 1.31671 0.86230 0.78193 0.79442 0.81666 1.19951 1.20824 1.19947 1.23112 0.92173 1.03623 1.02123 1.22944 0.97583 1.00164 0.99923 0.91066 0.91890 0.91736 0.93289 0.93507 0.93044 0.93532 0.91350 0.89985 0.95247 0.90509 0.84208 0.94991 0.89827 0.90000 0.91433 0.91868 0.91757 0.76900 0.89244 0.89274 0.92156 0.88839 0.88359 0.88593 0.89178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.28 37.16 0.38 -0.44 16 2 C 0.06 0.37 6.66 37.16 0.25 0.62 16 3 O -0.39 -3.48 10.34 -35.23 -0.36 -3.84 16 4 C 0.06 0.46 5.94 37.16 0.22 0.68 16 5 C -0.12 -0.81 5.84 -26.73 -0.16 -0.97 16 6 C 0.06 0.42 5.67 -3.83 -0.02 0.40 16 7 N -0.68 -5.04 6.47 -113.79 -0.74 -5.77 16 8 C 0.09 0.73 5.58 -3.83 -0.02 0.70 16 9 C -0.11 -0.86 1.73 -154.51 -0.27 -1.13 16 10 C -0.09 -0.76 5.21 -26.73 -0.14 -0.90 16 11 C 0.12 1.50 5.56 -4.04 -0.02 1.48 16 12 N -0.74 -10.20 5.56 -60.30 -0.33 -10.53 16 13 C 0.53 10.19 7.85 -10.98 -0.09 10.10 16 14 O -0.52 -12.10 15.86 5.56 0.09 -12.01 16 15 C -0.15 -3.16 6.16 36.00 0.22 -2.94 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 17 C -0.54 -15.44 9.50 30.94 0.29 -15.15 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.38 13.22 55.49 0.73 -25.64 16 21 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 C -0.17 -1.25 9.90 -26.73 -0.26 -1.52 16 26 C -0.17 -1.10 9.56 -26.73 -0.26 -1.35 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.34 2.17 8.23 -39.29 -0.32 1.84 16 39 H 0.03 0.24 7.93 -51.93 -0.41 -0.18 16 40 H 0.08 0.77 6.54 -51.93 -0.34 0.43 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.85 6.68 -51.93 -0.35 0.50 16 45 H 0.40 4.30 8.47 -40.82 -0.35 3.96 16 46 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 47 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 48 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 49 H 0.09 0.63 8.07 -51.93 -0.42 0.22 16 50 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 52 H 0.09 0.51 7.95 -51.93 -0.41 0.10 16 LS Contribution 440.32 15.07 6.64 6.64 Total: -1.00 -34.81 440.32 -10.93 -45.74 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -9.75 Total: 1.17 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 0.03 Total: -8.40 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: -0.34 Total: -41.95 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.28 Total: -15.85 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.64 Total: 6.64 kcal Total: -34.81 -10.93 -45.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163491221.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.852 kcal (2) G-P(sol) polarization free energy of solvation -34.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds