Wall clock time and date at job start Wed Apr 1 2020 03:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.47139 * 2 1 4 4 C 1.42901 * 113.99873 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47321 * 179.97438 * 4 3 2 6 6 C 1.52992 * 109.47334 * 179.97438 * 5 4 3 7 7 N 1.46897 * 109.47403 * 179.97438 * 6 5 4 8 8 C 1.46900 * 111.00757 * 179.97438 * 7 6 5 9 9 C 1.52986 * 109.47605 * 174.36323 * 8 7 6 10 10 C 1.53000 * 115.55328 * 278.20449 * 9 8 7 11 11 C 1.53000 * 109.47141 * 294.84367 * 10 9 8 12 12 N 1.46497 * 109.47319 * 178.37977 * 11 10 9 13 13 C 1.34785 * 120.00125 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99685 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99885 * 180.02562 * 13 12 11 16 16 S 1.80997 * 109.46866 * 180.02562 * 15 13 12 17 17 C 1.76202 * 100.00028 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99651 * 0.02562 * 17 16 15 19 19 C 1.38800 * 119.99886 * 179.97438 * 17 16 15 20 20 N 1.31621 * 120.00297 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99859 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46677 * 60.00537 * 21 19 17 23 23 H 1.48494 * 109.47229 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47344 * 300.00635 * 21 19 17 25 25 C 1.53001 * 117.50104 * 132.49502 * 9 8 7 26 26 C 1.53002 * 60.00100 * 252.50874 * 25 9 8 27 27 H 1.09002 * 109.47087 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46860 * 300.00162 * 1 2 3 29 29 H 1.09000 * 109.47043 * 60.00409 * 1 2 3 30 30 H 1.09006 * 109.47066 * 239.99653 * 2 1 3 31 31 H 1.09000 * 109.46995 * 120.00378 * 2 1 3 32 32 H 1.09003 * 109.47233 * 60.00085 * 4 3 2 33 33 H 1.08995 * 109.47107 * 299.99937 * 4 3 2 34 34 H 1.09003 * 109.46860 * 59.99902 * 5 4 3 35 35 H 1.08995 * 109.47015 * 300.00038 * 5 4 3 36 36 H 1.09005 * 109.47031 * 300.00047 * 6 5 4 37 37 H 1.09003 * 109.47136 * 60.00182 * 6 5 4 38 38 H 1.00898 * 110.99780 * 56.04348 * 7 6 5 39 39 H 1.09002 * 109.46809 * 294.36788 * 8 7 6 40 40 H 1.09004 * 109.46654 * 54.35581 * 8 7 6 41 41 H 1.09003 * 109.47187 * 54.83959 * 10 9 8 42 42 H 1.09003 * 109.47868 * 174.83964 * 10 9 8 43 43 H 1.08998 * 109.47097 * 298.38254 * 11 10 9 44 44 H 1.09000 * 109.47297 * 58.37754 * 11 10 9 45 45 H 0.97000 * 120.00121 * 0.02562 * 12 11 10 46 46 H 1.08998 * 109.47369 * 300.00334 * 15 13 12 47 47 H 1.09007 * 109.47071 * 60.00323 * 15 13 12 48 48 H 0.96996 * 120.00562 * 179.97438 * 20 19 17 49 49 H 1.09000 * 117.49855 * 0.02562 * 25 9 8 50 50 H 1.09004 * 117.50007 * 145.02084 * 25 9 8 51 51 H 1.08994 * 117.49715 * 252.50525 * 26 25 9 52 52 H 1.09002 * 117.49477 * 107.49005 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 -0.0012 6 6 5.3506 3.0591 -0.0012 7 7 5.7295 4.4784 -0.0023 8 6 7.1903 4.6335 -0.0017 9 6 7.5460 6.1145 -0.1447 10 6 7.5228 6.6640 -1.5724 11 6 8.6165 5.9841 -2.3985 12 7 8.5692 6.4819 -3.7754 13 6 9.4461 6.0208 -4.6893 14 8 10.2740 5.1934 -4.3717 15 6 9.3978 6.5335 -6.1056 16 16 10.6915 5.7289 -7.0828 17 6 10.4133 6.4922 -8.6463 18 1 9.6233 7.2200 -8.7589 19 6 11.2100 6.1588 -9.7329 20 7 12.1730 5.2722 -9.5955 21 14 10.9145 6.9675 -11.3907 22 1 11.0814 8.4374 -11.2611 23 1 11.8923 6.4441 -12.3781 24 1 9.5354 6.6645 -11.8505 25 6 8.5910 6.6860 0.8157 26 6 7.1158 7.0564 0.9818 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8333 0.9766 -0.8908 33 1 3.8340 0.9764 0.8891 34 1 3.4230 3.4221 0.8889 35 1 3.4224 3.4216 -0.8911 36 1 5.7533 2.5759 0.8891 37 1 5.7534 2.5752 -0.8910 38 1 5.3143 4.9640 0.7785 39 1 7.5958 4.2511 0.9350 40 1 7.6152 4.0754 -0.8362 41 1 6.5504 6.4645 -2.0227 42 1 7.6994 7.7394 -1.5509 43 1 9.5912 6.2073 -1.9646 44 1 8.4562 4.9059 -2.3962 45 1 7.9073 7.1440 -4.0293 46 1 8.4232 6.3103 -6.5397 47 1 9.5581 7.6117 -6.1074 48 1 12.7295 5.0389 -10.3549 49 1 9.0254 6.0066 1.5491 50 1 9.2623 7.4535 0.4304 51 1 6.8167 8.0674 0.7058 52 1 6.5794 6.6207 1.8247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163491221.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:48 Heat of formation + Delta-G solvation = -105.685866 kcal Electronic energy + Delta-G solvation = -26449.685901 eV Core-core repulsion = 22574.437579 eV Total energy + Delta-G solvation = -3875.248322 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.68851 -39.71087 -39.10709 -36.82806 -35.83541 -34.57904 -33.30405 -32.10953 -31.38697 -29.87432 -27.67241 -27.32029 -24.61919 -24.41286 -23.69971 -22.99972 -22.31370 -21.81360 -20.02442 -19.52212 -17.87541 -17.66310 -17.44684 -17.22132 -16.88300 -16.86876 -16.81339 -16.07456 -15.97003 -15.85628 -15.48228 -15.10482 -14.86639 -14.77508 -14.62279 -14.36294 -13.92961 -13.56903 -13.45906 -13.20878 -13.16336 -13.05479 -12.86533 -12.82808 -12.60760 -12.55017 -12.47402 -12.34154 -12.29216 -11.98072 -11.92762 -11.75578 -11.73297 -11.12300 -11.08381 -10.88729 -10.64198 -10.57964 -10.27582 -10.08305 -9.36125 -8.66326 -8.33748 -6.12195 1.27654 1.44623 1.47492 1.57543 1.62588 2.26969 2.31130 2.53609 2.86482 3.00214 3.33021 3.39055 3.75641 3.82769 3.93316 4.00085 4.01430 4.10433 4.14253 4.17698 4.22666 4.28835 4.36786 4.37583 4.40698 4.45916 4.47107 4.51634 4.52473 4.62201 4.69228 4.72900 4.83211 4.85639 4.86966 5.00439 5.07606 5.10245 5.15115 5.19299 5.25137 5.27093 5.29940 5.31679 5.42158 5.48308 6.01655 6.20299 6.25525 6.49007 6.53251 7.07231 7.26387 8.75276 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008906 B = 0.001685 C = 0.001467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3143.341591 B =16608.514783 C =19081.872319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.414 6.414 4 C 0.062 3.938 5 C -0.107 4.107 6 C 0.066 3.934 7 N -0.687 5.687 8 C 0.096 3.904 9 C -0.122 4.122 10 C -0.074 4.074 11 C 0.126 3.874 12 N -0.713 5.713 13 C 0.531 3.469 14 O -0.568 6.568 15 C -0.130 4.130 16 S -0.152 6.152 17 C -0.548 4.548 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.262 1.262 25 C -0.178 4.178 26 C -0.153 4.153 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.039 0.961 37 H 0.065 0.935 38 H 0.348 0.652 39 H 0.038 0.962 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.416 0.584 46 H 0.109 0.891 47 H 0.110 0.890 48 H 0.271 0.729 49 H 0.097 0.903 50 H 0.095 0.905 51 H 0.102 0.898 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.474 -1.600 26.395 34.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.334 6.334 4 C -0.015 4.015 5 C -0.145 4.145 6 C -0.064 4.064 7 N -0.319 5.319 8 C -0.033 4.033 9 C -0.123 4.123 10 C -0.112 4.112 11 C 0.003 3.997 12 N -0.367 5.367 13 C 0.317 3.683 14 O -0.447 6.447 15 C -0.281 4.281 16 S 0.075 5.925 17 C -0.696 4.696 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.186 1.186 23 H -0.204 1.204 24 H -0.187 1.187 25 C -0.215 4.215 26 C -0.190 4.190 27 H 0.107 0.893 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.167 0.833 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.253 0.747 46 H 0.127 0.873 47 H 0.129 0.871 48 H 0.080 0.920 49 H 0.115 0.885 50 H 0.113 0.887 51 H 0.121 0.879 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -20.158 -2.854 26.189 33.172 hybrid contribution -0.492 0.786 -0.650 1.132 sum -20.650 -2.068 25.539 32.908 Atomic orbital electron populations 1.21771 0.93003 1.03348 1.02670 1.22647 0.96337 0.82939 1.00781 1.87843 1.21962 1.27976 1.95598 1.22486 0.80759 0.97516 1.00769 1.21340 0.94940 0.94812 1.03372 1.21769 0.94571 0.89210 1.00826 1.60270 1.09074 1.11771 1.50810 1.21411 0.87892 0.93735 1.00248 1.21207 1.05515 0.94126 0.91483 1.21121 0.98051 0.99697 0.92319 1.21328 0.99737 0.98462 0.80193 1.45778 1.35486 1.45390 1.10006 1.20093 0.80531 0.80869 0.86784 1.90683 1.38639 1.34241 1.81099 1.23377 1.04759 1.04997 0.94942 1.85567 1.42658 1.57718 1.06569 1.23186 1.21746 1.29029 0.95658 0.89890 1.26128 0.93893 0.95505 1.03550 1.70174 1.19390 1.32141 1.33055 0.85001 0.78512 0.78634 0.75824 1.18624 1.20363 1.18684 1.23155 0.92695 1.03644 1.02019 1.23003 0.96800 1.00018 0.99163 0.89256 0.92124 0.92507 0.92972 0.92431 0.93124 0.92354 0.90956 0.91515 0.94303 0.91634 0.83334 0.94404 0.91718 0.89880 0.90089 0.92808 0.93015 0.74709 0.87266 0.87147 0.91988 0.88501 0.88662 0.87931 0.88010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.28 71.98 0.74 -0.78 16 2 C 0.05 0.61 6.66 71.98 0.48 1.09 16 3 O -0.41 -7.18 10.34 -148.98 -1.54 -8.72 16 4 C 0.06 0.85 5.94 71.98 0.43 1.27 16 5 C -0.11 -1.43 5.84 30.59 0.18 -1.25 16 6 C 0.07 0.86 5.67 86.30 0.49 1.35 16 7 N -0.69 -9.28 6.47 -513.92 -3.33 -12.61 16 8 C 0.10 1.41 5.58 86.30 0.48 1.89 16 9 C -0.12 -1.68 1.73 -52.18 -0.09 -1.77 16 10 C -0.07 -1.15 5.21 30.59 0.16 -0.99 16 11 C 0.13 2.93 5.56 86.38 0.48 3.41 16 12 N -0.71 -18.64 5.56 -463.06 -2.57 -21.21 16 13 C 0.53 20.22 7.85 87.66 0.69 20.90 16 14 O -0.57 -27.13 15.86 -3.03 -0.05 -27.17 16 15 C -0.13 -5.23 6.16 71.24 0.44 -4.80 16 16 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 17 C -0.55 -31.66 9.50 67.95 0.65 -31.01 16 18 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 19 C 0.01 0.81 5.49 84.86 0.47 1.27 16 20 N -0.91 -56.43 13.22 21.65 0.29 -56.14 16 21 Si 1.00 43.84 29.55 68.60 2.03 45.86 16 22 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 23 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 25 C -0.18 -2.27 9.90 30.60 0.30 -1.96 16 26 C -0.15 -1.59 9.56 30.60 0.29 -1.29 16 27 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.04 0.44 8.14 -2.38 -0.02 0.42 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.35 3.77 8.23 -89.70 -0.74 3.03 16 39 H 0.04 0.51 7.93 -2.39 -0.02 0.49 16 40 H 0.06 1.20 6.54 -2.38 -0.02 1.19 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 43 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.05 1.37 6.68 -2.39 -0.02 1.36 16 45 H 0.42 7.90 8.47 -92.71 -0.79 7.12 16 46 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 47 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 48 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 49 H 0.10 1.17 8.07 -2.39 -0.02 1.15 16 50 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 51 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.10 0.85 7.95 -2.39 -0.02 0.83 16 Total: -1.00 -77.37 440.32 -0.79 -78.16 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: -0.63 Total: 24.25 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 6.18 Total: -12.67 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -5.61 Total: -89.96 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -1.59 Total: -35.90 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -77.37 -0.79 -78.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163491221.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.526 kcal (2) G-P(sol) polarization free energy of solvation -77.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds