Wall clock time and date at job start Wed Apr 1 2020 03:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 119.99496 * 2 1 4 4 C 1.53112 * 109.52532 * 59.68273 * 3 2 1 5 5 C 1.53034 * 109.28038 * 182.43647 * 4 3 2 6 6 N 1.46850 * 109.52433 * 59.17753 * 5 4 3 7 7 C 1.46901 * 111.00326 * 174.16281 * 6 5 4 8 8 C 1.53000 * 109.47124 * 64.20830 * 7 6 5 9 9 C 1.52995 * 109.47250 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47025 * 60.00091 * 9 8 7 11 11 C 1.50699 * 109.46910 * 59.99801 * 10 9 8 12 12 H 1.08003 * 120.00242 * 239.99389 * 11 10 9 13 13 C 1.37874 * 120.00098 * 60.00646 * 11 10 9 14 14 N 1.31515 * 119.99798 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00289 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47100 * 359.97438 * 15 13 11 17 17 H 1.48507 * 109.47157 * 119.99644 * 15 13 11 18 18 H 1.48499 * 109.47286 * 239.99600 * 15 13 11 19 19 C 1.53000 * 109.47032 * 300.00042 * 10 9 8 20 20 C 1.52997 * 109.46900 * 304.20987 * 7 6 5 21 21 C 1.46847 * 111.19610 * 298.25794 * 6 5 4 22 22 C 1.53045 * 109.52176 * 61.74245 * 21 6 5 23 23 S 1.65595 * 119.99949 * 179.97438 * 2 1 3 24 24 C 1.81399 * 104.44875 * 270.00243 * 23 2 1 25 25 O 1.42103 * 104.27479 * 153.93536 * 23 2 1 26 26 O 1.42097 * 104.28146 * 26.07457 * 23 2 1 27 27 H 1.09000 * 109.47416 * 270.00342 * 1 2 3 28 28 H 1.09007 * 109.47067 * 30.00539 * 1 2 3 29 29 H 1.09005 * 109.47102 * 150.00034 * 1 2 3 30 30 H 1.09007 * 109.51872 * 179.86826 * 3 2 1 31 31 H 1.09000 * 109.50364 * 302.37783 * 4 3 2 32 32 H 1.09004 * 109.50787 * 62.49214 * 4 3 2 33 33 H 1.09001 * 109.46726 * 299.16535 * 5 4 3 34 34 H 1.09000 * 109.45915 * 179.18909 * 5 4 3 35 35 H 1.09004 * 109.47180 * 184.20762 * 7 6 5 36 36 H 1.08995 * 109.47156 * 300.00193 * 8 7 6 37 37 H 1.09003 * 109.46723 * 60.00243 * 8 7 6 38 38 H 1.08995 * 109.47287 * 300.00221 * 9 8 7 39 39 H 1.08995 * 109.47173 * 179.97438 * 9 8 7 40 40 H 1.09002 * 109.47060 * 180.02562 * 10 9 8 41 41 H 0.97000 * 120.00086 * 180.02562 * 14 13 11 42 42 H 1.08995 * 109.47156 * 299.99794 * 19 10 9 43 43 H 1.09007 * 109.47208 * 179.97438 * 19 10 9 44 44 H 1.09005 * 109.46997 * 299.99732 * 20 7 6 45 45 H 1.08995 * 109.47187 * 59.99925 * 20 7 6 46 46 H 1.08996 * 109.46410 * 301.72819 * 21 6 5 47 47 H 1.09001 * 109.45673 * 181.74780 * 21 6 5 48 48 H 1.09001 * 109.50455 * 180.88021 * 22 21 6 49 49 H 1.08997 * 109.50296 * 60.76213 * 22 21 6 50 50 H 1.09001 * 109.47190 * 59.99977 * 24 23 2 51 51 H 1.09004 * 109.47089 * 180.02562 * 24 23 2 52 52 H 1.09004 * 109.47568 * 300.00120 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 1.8223 2.0762 1.2457 5 6 2.5435 3.4254 1.2095 6 7 2.1567 4.1562 -0.0042 7 6 2.7216 5.5123 -0.0047 8 6 4.2485 5.4287 -0.0539 9 6 4.8368 6.8411 -0.0551 10 6 4.4068 7.5738 1.2174 11 6 4.9078 6.8219 2.4235 12 1 4.2072 6.4418 3.1523 13 6 6.2605 6.6195 2.5968 14 7 7.1136 7.0821 1.7092 15 14 6.8816 5.6881 4.0922 16 1 5.7289 5.2762 4.9327 17 1 7.6281 4.4829 3.6499 18 1 7.7818 6.5653 4.8830 19 6 2.8798 7.6573 1.2665 20 6 2.2915 6.2443 1.2680 21 6 2.5495 3.4221 -1.2138 22 6 1.8284 2.0726 -1.2499 23 16 2.2930 -1.4341 0.0006 24 6 2.5192 -1.8253 1.7574 25 8 3.5395 -1.1193 -0.6046 26 8 1.3970 -2.3564 -0.6042 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5140 29 1 -0.3633 -0.8900 -0.5139 30 1 3.2693 1.0706 0.0024 31 1 0.7448 2.2398 1.2625 32 1 2.1216 1.5275 2.1388 33 1 3.6211 3.2614 1.2066 34 1 2.2673 4.0085 2.0880 35 1 2.3592 6.0564 -0.8770 36 1 4.6108 4.8846 0.8183 37 1 4.5548 4.9072 -0.9607 38 1 4.4744 7.3849 -0.9274 39 1 5.9245 6.7816 -0.0896 40 1 4.8255 8.5801 1.2163 41 1 8.0653 6.9394 1.8309 42 1 2.5175 8.2011 0.3942 43 1 2.5734 8.1789 2.1733 44 1 1.2037 6.3038 1.3030 45 1 2.6539 5.7002 2.1402 46 1 3.6270 3.2579 -1.2052 47 1 2.2775 4.0027 -2.0953 48 1 2.1321 1.5214 -2.1398 49 1 0.7510 2.2363 -1.2724 50 1 1.5450 -1.9177 2.2375 51 1 3.0625 -2.7654 1.8533 52 1 3.0865 -1.0277 2.2373 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173338127.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:07 Heat of formation + Delta-G solvation = -95.512263 kcal Electronic energy + Delta-G solvation = -30634.483349 eV Core-core repulsion = 26759.676188 eV Total energy + Delta-G solvation = -3874.807162 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.95828 -38.95911 -38.21305 -37.05141 -36.62479 -34.32019 -32.54085 -31.95735 -31.09122 -30.28368 -29.44384 -27.39989 -26.53571 -24.55529 -24.21893 -22.96474 -21.88698 -20.74112 -19.86298 -19.79651 -18.66393 -17.70604 -17.47753 -17.33016 -16.87413 -16.59176 -15.82078 -15.80742 -15.50557 -15.06496 -15.00328 -14.81059 -14.61148 -14.54914 -14.12823 -14.02648 -13.84055 -13.64430 -13.51322 -13.35057 -13.17743 -13.12734 -13.01224 -12.88158 -12.73957 -12.57046 -12.54127 -12.37692 -12.16706 -12.06464 -11.98747 -11.93291 -11.80040 -11.47369 -11.35590 -11.30336 -10.84526 -10.66907 -10.46058 -10.29937 -9.84952 -9.02920 -8.01261 -6.11060 -0.70522 1.38208 1.42008 1.50654 1.63994 2.45820 2.92834 3.06209 3.16328 3.27354 3.61899 3.89079 3.96080 4.06684 4.09652 4.15827 4.22154 4.27696 4.37747 4.45324 4.51092 4.62344 4.70039 4.71673 4.78802 4.79448 4.83225 4.86807 4.92686 4.93726 4.98930 5.02151 5.05785 5.08583 5.11195 5.13027 5.23997 5.28936 5.34304 5.45830 5.54830 5.58357 5.66548 5.67954 5.72147 5.76438 5.96819 6.25421 6.29349 6.34139 6.49113 6.99873 7.54841 9.03491 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014312 B = 0.003278 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.887756 B = 8540.296847 C = 9555.727777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.995 5.995 3 C 0.147 3.853 4 C -0.114 4.114 5 C 0.046 3.954 6 N -0.522 5.522 7 C 0.099 3.901 8 C -0.118 4.118 9 C -0.100 4.100 10 C 0.038 3.962 11 C -0.498 4.498 12 H 0.056 0.944 13 C 0.012 3.988 14 N -0.921 5.921 15 Si 0.936 3.064 16 H -0.261 1.261 17 H -0.287 1.287 18 H -0.288 1.288 19 C -0.101 4.101 20 C -0.090 4.090 21 C 0.052 3.948 22 C -0.113 4.113 23 S 2.610 3.390 24 C -0.654 4.654 25 O -1.000 7.000 26 O -0.989 6.989 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.017 0.983 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.047 0.953 37 H 0.036 0.964 38 H 0.023 0.977 39 H 0.051 0.949 40 H -0.015 1.015 41 H 0.254 0.746 42 H 0.048 0.952 43 H 0.047 0.953 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.021 0.979 47 H 0.081 0.919 48 H 0.066 0.934 49 H 0.090 0.910 50 H 0.153 0.847 51 H 0.141 0.859 52 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.513 -16.089 -0.881 22.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.832 5.832 3 C 0.041 3.959 4 C -0.153 4.153 5 C -0.083 4.083 6 N -0.245 5.245 7 C -0.009 4.009 8 C -0.157 4.157 9 C -0.139 4.139 10 C 0.020 3.980 11 C -0.536 4.536 12 H 0.074 0.926 13 C -0.185 4.185 14 N -0.562 5.562 15 Si 0.763 3.237 16 H -0.185 1.185 17 H -0.213 1.213 18 H -0.214 1.214 19 C -0.139 4.139 20 C -0.127 4.127 21 C -0.076 4.076 22 C -0.152 4.152 23 S 2.708 3.292 24 C -0.808 4.808 25 O -0.991 6.991 26 O -0.980 6.980 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.036 0.964 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.003 0.997 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.039 0.961 47 H 0.099 0.901 48 H 0.084 0.916 49 H 0.108 0.892 50 H 0.171 0.829 51 H 0.159 0.841 52 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.619 -16.565 -1.701 22.830 hybrid contribution 2.160 0.058 1.212 2.477 sum -13.459 -16.507 -0.489 21.304 Atomic orbital electron populations 1.21739 0.77139 1.04407 1.03467 1.57257 1.15968 1.19840 1.90089 1.20929 0.95649 0.83114 0.96214 1.21938 1.02508 0.93640 0.97242 1.22185 0.97070 0.95178 0.93880 1.62348 1.58264 1.01866 1.01992 1.21570 0.91413 0.89142 0.98766 1.21841 0.97123 0.97530 0.99215 1.21309 1.00972 0.95202 0.96399 1.18694 0.91825 0.93801 0.93724 1.21427 0.91399 1.33946 1.06857 0.92569 1.25618 0.97595 0.96981 0.98310 1.70033 1.01962 1.47864 1.36330 0.85829 0.78594 0.78473 0.80795 1.18484 1.21346 1.21388 1.21464 0.96248 0.96623 0.99614 1.21411 0.99167 0.95194 0.96955 1.22085 0.97129 0.94885 0.93537 1.21832 1.02257 0.93862 0.97269 1.04607 0.72668 0.72909 0.79055 1.30394 1.13704 1.13194 1.23492 1.93569 1.46068 1.83474 1.75967 1.93541 1.65157 1.63506 1.75772 0.90461 0.89776 0.90393 0.90017 0.89011 0.89794 0.96433 0.90087 0.90628 0.93420 0.94498 0.95785 0.93027 0.99727 0.93629 0.93289 0.93425 0.91301 0.92359 0.96062 0.90108 0.91550 0.89184 0.82878 0.84076 0.84225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 9.65 127.77 1.23 2.12 16 2 N -0.99 -15.94 3.01 -516.09 -1.55 -17.49 16 3 C 0.15 2.95 2.52 45.07 0.11 3.06 16 4 C -0.11 -2.14 5.41 30.64 0.17 -1.97 16 5 C 0.05 1.22 4.67 86.32 0.40 1.63 16 6 N -0.52 -14.34 4.68 -871.10 -4.08 -18.42 16 7 C 0.10 3.26 2.29 44.91 0.10 3.37 16 8 C -0.12 -4.75 4.29 30.59 0.13 -4.62 16 9 C -0.10 -4.67 5.24 30.59 0.16 -4.51 16 10 C 0.04 1.84 2.59 -11.54 -0.03 1.81 16 11 C -0.50 -25.86 6.61 25.60 0.17 -25.69 16 12 H 0.06 2.85 6.71 -2.91 -0.02 2.83 16 13 C 0.01 0.67 5.30 84.65 0.45 1.12 16 14 N -0.92 -53.06 11.32 21.45 0.24 -52.82 16 15 Si 0.94 42.76 29.54 68.60 2.03 44.78 16 16 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 17 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 18 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 19 C -0.10 -3.93 5.41 30.61 0.17 -3.77 16 20 C -0.09 -3.04 4.62 30.61 0.14 -2.90 16 21 C 0.05 1.35 4.89 86.33 0.42 1.77 16 22 C -0.11 -2.36 5.40 30.65 0.17 -2.20 16 23 S 2.61 46.44 6.05 -56.49 -0.34 46.10 16 24 C -0.65 -5.81 10.99 113.37 1.25 -4.56 16 25 O -1.00 -26.92 16.57 -127.65 -2.12 -29.04 16 26 O -0.99 -22.80 16.57 -127.65 -2.12 -24.92 16 27 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.08 0.92 6.39 -2.38 -0.02 0.90 16 29 H 0.08 0.98 6.91 -2.38 -0.02 0.96 16 30 H 0.08 1.93 6.88 -2.38 -0.02 1.92 16 31 H 0.09 1.49 7.59 -2.39 -0.02 1.47 16 32 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.02 0.56 6.71 -2.39 -0.02 0.54 16 34 H 0.08 2.28 5.90 -2.39 -0.01 2.26 16 35 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 36 H 0.05 2.15 5.71 -2.39 -0.01 2.14 16 37 H 0.04 1.42 6.54 -2.39 -0.02 1.41 16 38 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.05 2.80 6.07 -2.39 -0.01 2.78 16 40 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 41 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 42 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 44 H 0.07 2.02 8.14 -2.38 -0.02 2.01 16 45 H 0.06 2.15 4.69 -2.39 -0.01 2.14 16 46 H 0.02 0.63 6.63 -2.39 -0.02 0.62 16 47 H 0.08 1.96 8.12 -2.39 -0.02 1.94 16 48 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.09 1.63 6.58 -2.39 -0.02 1.62 16 50 H 0.15 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 52 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -69.81 386.41 -2.00 -71.81 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.90 Total: 15.33 kcal Atomic # 6 Polarization: -40.38 SS G_CDS: 5.04 Total: -35.34 kcal Atomic # 7 Polarization: -83.34 SS G_CDS: -5.39 Total: -88.73 kcal Atomic # 8 Polarization: -49.72 SS G_CDS: -4.23 Total: -53.95 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 46.44 SS G_CDS: -0.34 Total: 46.10 kcal Total: -69.81 -2.00 -71.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338127.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.702 kcal (2) G-P(sol) polarization free energy of solvation -69.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds