Wall clock time and date at job start Wed Apr 1 2020 03:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81403 * 109.47297 * 2 1 4 4 O 1.42094 * 110.53966 * 76.64896 * 3 2 1 5 5 O 1.42099 * 110.54449 * 299.89535 * 3 2 1 6 6 N 1.65601 * 104.44828 * 188.26996 * 3 2 1 7 7 C 1.46499 * 119.99477 * 97.84866 * 6 3 2 8 8 C 1.53001 * 109.47326 * 243.41527 * 7 6 3 9 9 C 1.52997 * 109.47008 * 60.00043 * 8 7 6 10 10 C 1.53005 * 109.46917 * 60.00404 * 9 8 7 11 11 C 1.50699 * 109.47216 * 179.97438 * 10 9 8 12 12 H 1.08009 * 119.99586 * 5.42647 * 11 10 9 13 13 C 1.37870 * 120.00052 * 185.43168 * 11 10 9 14 14 N 1.31511 * 120.00080 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99779 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47140 * 90.00067 * 15 13 11 17 17 H 1.48502 * 109.46996 * 209.99870 * 15 13 11 18 18 H 1.48496 * 109.47262 * 329.99650 * 15 13 11 19 19 C 1.52993 * 109.47059 * 299.99830 * 10 9 8 20 20 C 1.52996 * 109.47571 * 3.41822 * 7 6 3 21 21 C 1.46495 * 120.00252 * 277.84856 * 6 3 2 22 22 H 1.08993 * 109.50454 * 330.89947 * 21 6 3 23 23 C 1.53125 * 109.50364 * 210.78005 * 21 6 3 24 24 C 1.53115 * 109.15826 * 182.40622 * 23 21 6 25 25 C 1.53035 * 109.28200 * 57.65524 * 24 23 21 26 26 N 1.46842 * 109.52240 * 300.82240 * 25 24 23 27 27 C 1.46839 * 111.20290 * 61.73750 * 26 25 24 28 28 H 1.09000 * 109.47009 * 59.99466 * 1 2 3 29 29 H 1.08992 * 109.47488 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46911 * 299.99986 * 1 2 3 31 31 H 1.09002 * 109.46911 * 240.00014 * 2 1 3 32 32 H 1.08992 * 109.47205 * 120.00240 * 2 1 3 33 33 H 1.09007 * 109.47167 * 123.42132 * 7 6 3 34 34 H 1.09004 * 109.46896 * 300.00352 * 8 7 6 35 35 H 1.08999 * 109.47252 * 180.02562 * 8 7 6 36 36 H 1.08999 * 109.47417 * 300.00270 * 9 8 7 37 37 H 1.09007 * 109.47113 * 179.97438 * 9 8 7 38 38 H 1.08999 * 109.47187 * 59.99724 * 10 9 8 39 39 H 0.97006 * 119.99573 * 180.02562 * 14 13 11 40 40 H 1.08995 * 109.47576 * 180.02562 * 19 10 9 41 41 H 1.09007 * 109.47337 * 299.99986 * 19 10 9 42 42 H 1.08998 * 109.47111 * 59.99891 * 20 7 6 43 43 H 1.09007 * 109.47118 * 180.02562 * 20 7 6 44 44 H 1.09002 * 109.52291 * 302.31122 * 23 21 6 45 45 H 1.09000 * 109.51795 * 62.49937 * 23 21 6 46 46 H 1.09005 * 109.50215 * 297.71209 * 24 23 21 47 47 H 1.09004 * 109.49742 * 177.59957 * 24 23 21 48 48 H 1.09002 * 109.46271 * 180.80431 * 25 24 23 49 49 H 1.09000 * 109.45725 * 60.83429 * 25 24 23 50 50 H 1.00910 * 110.99909 * 297.64001 * 26 25 24 51 51 H 1.08999 * 109.46814 * 178.23855 * 27 26 25 52 52 H 1.09007 * 109.46222 * 58.27562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7103 0.0000 4 8 2.0113 2.2827 1.2946 5 8 1.6757 2.4015 -1.1536 6 7 3.7687 1.5708 -0.2307 7 6 4.3364 1.7418 -1.5703 8 6 4.9862 0.4316 -2.0200 9 6 3.9316 -0.6764 -2.0507 10 6 2.8202 -0.2955 -3.0309 11 6 1.7817 -1.3871 -3.0617 12 1 1.8561 -2.2226 -2.3812 13 6 0.7368 -1.3194 -3.9586 14 7 0.6460 -0.3019 -4.7868 15 14 -0.5501 -2.6729 -3.9972 16 1 -1.6547 -2.3325 -3.0649 17 1 -1.0882 -2.8052 -5.3749 18 1 0.0696 -3.9571 -3.5825 19 6 2.1705 1.0146 -2.5813 20 6 3.2252 2.1226 -2.5505 21 6 4.6463 1.2764 0.9048 22 1 4.2058 1.6758 1.8183 23 6 6.0160 1.9204 0.6727 24 6 6.9451 1.5579 1.8345 25 6 7.0487 0.0348 1.9424 26 7 5.7130 -0.5334 2.1646 27 6 4.8166 -0.2385 1.0397 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.0879 2.5312 -1.5484 34 1 5.7780 0.1603 -1.3216 35 1 5.4090 0.5590 -3.0165 36 1 3.5091 -0.8036 -1.0540 37 1 4.3944 -1.6097 -2.3715 38 1 3.2427 -0.1683 -4.0276 39 1 -0.0895 -0.2542 -5.4176 40 1 1.3785 1.2857 -3.2793 41 1 1.7480 0.8874 -1.5846 42 1 2.7623 3.0561 -2.2302 43 1 3.6476 2.2494 -3.5473 44 1 6.4390 1.5502 -0.2612 45 1 5.9049 3.0034 0.6193 46 1 6.5414 1.9619 2.7630 47 1 7.9345 1.9781 1.6539 48 1 7.6983 -0.2267 2.7778 49 1 7.4653 -0.3671 1.0188 50 1 5.3209 -0.2059 3.0349 51 1 3.8449 -0.6986 1.2192 52 1 5.2436 -0.6392 0.1202 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173341412.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:53 Heat of formation + Delta-G solvation = 19.663671 kcal Electronic energy + Delta-G solvation = -33132.476763 eV Core-core repulsion = 29262.664005 eV Total energy + Delta-G solvation = -3869.812758 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.17478 -38.72692 -36.37815 -35.56780 -34.60095 -32.69829 -32.31413 -31.59764 -30.27807 -29.27490 -28.13903 -25.10347 -23.75365 -23.53384 -22.67640 -21.68996 -21.19865 -20.36515 -19.41363 -18.13590 -17.11252 -16.46174 -16.16606 -15.87160 -15.42992 -15.16577 -14.96285 -14.78431 -14.65155 -14.40229 -13.66453 -13.48594 -13.21744 -13.14793 -12.73770 -12.71080 -12.35925 -12.25757 -12.20920 -11.99721 -11.87790 -11.83525 -11.51670 -11.39974 -11.30519 -11.22267 -10.97980 -10.81749 -10.76031 -10.68896 -10.46374 -10.32352 -10.16762 -10.11082 -9.76272 -9.37336 -9.12264 -8.84040 -8.68491 -8.54460 -8.13905 -8.00885 -6.00538 -4.05936 0.78611 3.00751 3.26949 3.35505 3.37321 4.20584 4.29089 4.41137 4.52404 4.65185 4.74564 4.90541 4.98105 5.08390 5.19869 5.26677 5.31792 5.31822 5.37197 5.46178 5.54509 5.56400 5.66378 5.69882 5.74692 5.77167 5.85918 5.96333 6.02264 6.07317 6.13275 6.18254 6.31902 6.33457 6.38949 6.50166 6.56204 6.58551 6.70204 6.76824 6.87391 6.94354 7.02704 7.12833 7.19196 7.28516 7.63066 7.75852 7.97165 8.19145 8.41974 8.98893 9.58479 11.06079 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015133 B = 0.004992 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.873634 B = 5608.172039 C = 5886.232948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.648 4.648 3 S 2.583 3.417 4 O -0.991 6.991 5 O -0.925 6.925 6 N -0.977 5.977 7 C 0.158 3.842 8 C -0.134 4.134 9 C -0.122 4.122 10 C 0.024 3.976 11 C -0.519 4.519 12 H 0.053 0.947 13 C 0.068 3.932 14 N -0.881 5.881 15 Si 0.878 3.122 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.275 1.275 19 C -0.084 4.084 20 C -0.138 4.138 21 C 0.116 3.884 22 H 0.090 0.910 23 C -0.123 4.123 24 C -0.156 4.156 25 C 0.054 3.946 26 N -0.680 5.680 27 C 0.025 3.975 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.190 0.810 32 H 0.110 0.890 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.034 0.966 39 H 0.260 0.740 40 H 0.095 0.905 41 H 0.013 0.987 42 H 0.104 0.896 43 H 0.059 0.941 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.070 0.930 48 H 0.074 0.926 49 H 0.075 0.925 50 H 0.339 0.661 51 H 0.075 0.925 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.181 3.252 11.304 15.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.777 4.777 3 S 2.683 3.317 4 O -0.981 6.981 5 O -0.915 6.915 6 N -0.814 5.814 7 C 0.053 3.947 8 C -0.172 4.172 9 C -0.159 4.159 10 C 0.005 3.995 11 C -0.557 4.557 12 H 0.072 0.928 13 C -0.134 4.134 14 N -0.519 5.519 15 Si 0.706 3.294 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.200 1.200 19 C -0.123 4.123 20 C -0.177 4.177 21 C 0.008 3.992 22 H 0.108 0.892 23 C -0.162 4.162 24 C -0.196 4.196 25 C -0.076 4.076 26 N -0.308 5.308 27 C -0.106 4.106 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.207 0.793 32 H 0.129 0.871 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.114 0.886 41 H 0.031 0.969 42 H 0.122 0.878 43 H 0.077 0.923 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.093 0.907 50 H 0.156 0.844 51 H 0.093 0.907 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.744 3.506 11.064 15.154 hybrid contribution -0.796 -0.523 -0.025 0.952 sum 8.948 2.984 11.039 14.520 Atomic orbital electron populations 1.21360 0.90955 1.04640 1.02196 1.30922 1.07323 1.25935 1.13486 1.06303 0.73872 0.78785 0.72750 1.93419 1.85490 1.76316 1.42875 1.94057 1.81185 1.71242 1.45026 1.57417 1.23643 1.86899 1.13395 1.21068 0.96857 0.96870 0.79909 1.22124 0.98359 0.96177 1.00585 1.21888 0.97033 0.96415 1.00609 1.19108 0.91966 0.93933 0.94445 1.21108 1.08833 1.06716 1.19018 0.92831 1.24919 0.97754 0.95324 0.95439 1.69913 1.31421 1.29463 1.21057 0.86813 0.82300 0.82851 0.77401 1.20601 1.21261 1.19965 1.22503 0.97996 0.92951 0.98853 1.22719 0.94753 1.03064 0.97175 1.21603 0.91785 0.96518 0.89319 0.89243 1.21869 0.93970 1.00994 0.99385 1.22303 1.00166 0.98317 0.98816 1.22063 0.91276 0.91752 1.02461 1.60709 1.03150 1.61857 1.05115 1.23014 0.97692 0.93919 0.95948 0.90382 0.90377 0.92988 0.79294 0.87126 0.91589 0.92735 0.91499 0.92936 0.93142 0.94829 0.92977 0.88610 0.96927 0.87814 0.92289 0.90243 0.91320 0.91867 0.91140 0.90741 0.90697 0.84376 0.90692 0.88325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 9.84 37.16 0.37 -1.89 16 2 C -0.65 -11.13 4.69 37.16 0.17 -10.95 16 3 S 2.58 46.19 4.63 -107.50 -0.50 45.69 16 4 O -0.99 -19.20 16.77 -57.54 -0.96 -20.16 16 5 O -0.93 -18.90 10.13 -57.54 -0.58 -19.48 16 6 N -0.98 -14.91 2.06 -100.21 -0.21 -15.12 16 7 C 0.16 2.45 2.49 -67.93 -0.17 2.28 16 8 C -0.13 -2.03 4.62 -26.73 -0.12 -2.15 16 9 C -0.12 -2.23 4.19 -26.73 -0.11 -2.34 16 10 C 0.02 0.55 1.75 -91.77 -0.16 0.39 16 11 C -0.52 -13.01 7.04 -34.44 -0.24 -13.26 16 12 H 0.05 1.33 7.73 -52.48 -0.41 0.92 16 13 C 0.07 1.79 5.33 -17.82 -0.09 1.69 16 14 N -0.88 -24.23 11.73 55.43 0.65 -23.58 16 15 Si 0.88 20.43 29.54 -169.99 -5.02 15.41 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 C -0.08 -1.85 3.15 -26.73 -0.08 -1.93 16 20 C -0.14 -2.59 4.85 -26.73 -0.13 -2.72 16 21 C 0.12 1.49 2.52 -67.85 -0.17 1.32 16 22 H 0.09 1.20 7.02 -51.93 -0.36 0.84 16 23 C -0.12 -1.33 4.29 -26.61 -0.11 -1.44 16 24 C -0.16 -1.35 6.08 -26.65 -0.16 -1.51 16 25 C 0.05 0.48 6.55 -3.84 -0.03 0.46 16 26 N -0.68 -7.17 6.87 -113.82 -0.78 -7.95 16 27 C 0.03 0.31 4.73 -3.84 -0.02 0.29 16 28 H 0.08 1.44 7.95 -51.93 -0.41 1.03 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.19 3.62 2.13 -51.92 -0.11 3.51 16 32 H 0.11 1.59 6.73 -51.93 -0.35 1.24 16 33 H 0.07 0.90 7.04 -51.93 -0.37 0.53 16 34 H 0.05 0.71 4.47 -51.93 -0.23 0.48 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.05 0.90 3.22 -51.93 -0.17 0.74 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.10 2.49 6.51 -51.93 -0.34 2.15 16 41 H 0.01 0.27 0.73 -2.23 0.00 0.27 16 42 H 0.10 2.02 5.75 -33.28 -0.19 1.83 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.08 0.85 5.37 -51.93 -0.28 0.57 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.34 3.18 8.86 -39.29 -0.35 2.83 16 51 H 0.07 0.96 6.29 -51.93 -0.33 0.63 16 52 H 0.10 1.29 4.55 -51.92 -0.24 1.05 16 LS Contribution 357.37 15.07 5.39 5.39 Total: -1.00 -29.32 357.37 -11.00 -40.32 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -7.91 Total: 11.23 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: -1.07 Total: -31.76 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -0.34 Total: -46.65 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -1.55 Total: -39.64 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 46.19 SS G_CDS: -0.50 Total: 45.69 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.32 -11.00 -40.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173341412.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.985 kcal (2) G-P(sol) polarization free energy of solvation -29.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds