Wall clock time and date at job start Wed Apr 1 2020 03:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81403 * 109.47297 * 2 1 4 4 O 1.42094 * 110.53966 * 76.64896 * 3 2 1 5 5 O 1.42099 * 110.54449 * 299.89535 * 3 2 1 6 6 N 1.65601 * 104.44828 * 188.26996 * 3 2 1 7 7 C 1.46499 * 119.99477 * 97.84866 * 6 3 2 8 8 C 1.53001 * 109.47326 * 243.41527 * 7 6 3 9 9 C 1.52997 * 109.47008 * 60.00043 * 8 7 6 10 10 C 1.53005 * 109.46917 * 60.00404 * 9 8 7 11 11 C 1.50699 * 109.47216 * 179.97438 * 10 9 8 12 12 H 1.08009 * 119.99586 * 5.42647 * 11 10 9 13 13 C 1.37870 * 120.00052 * 185.43168 * 11 10 9 14 14 N 1.31511 * 120.00080 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99779 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47140 * 90.00067 * 15 13 11 17 17 H 1.48502 * 109.46996 * 209.99870 * 15 13 11 18 18 H 1.48496 * 109.47262 * 329.99650 * 15 13 11 19 19 C 1.52993 * 109.47059 * 299.99830 * 10 9 8 20 20 C 1.52996 * 109.47571 * 3.41822 * 7 6 3 21 21 C 1.46495 * 120.00252 * 277.84856 * 6 3 2 22 22 H 1.08993 * 109.50454 * 330.89947 * 21 6 3 23 23 C 1.53125 * 109.50364 * 210.78005 * 21 6 3 24 24 C 1.53115 * 109.15826 * 182.40622 * 23 21 6 25 25 C 1.53035 * 109.28200 * 57.65524 * 24 23 21 26 26 N 1.46842 * 109.52240 * 300.82240 * 25 24 23 27 27 C 1.46839 * 111.20290 * 61.73750 * 26 25 24 28 28 H 1.09000 * 109.47009 * 59.99466 * 1 2 3 29 29 H 1.08992 * 109.47488 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46911 * 299.99986 * 1 2 3 31 31 H 1.09002 * 109.46911 * 240.00014 * 2 1 3 32 32 H 1.08992 * 109.47205 * 120.00240 * 2 1 3 33 33 H 1.09007 * 109.47167 * 123.42132 * 7 6 3 34 34 H 1.09004 * 109.46896 * 300.00352 * 8 7 6 35 35 H 1.08999 * 109.47252 * 180.02562 * 8 7 6 36 36 H 1.08999 * 109.47417 * 300.00270 * 9 8 7 37 37 H 1.09007 * 109.47113 * 179.97438 * 9 8 7 38 38 H 1.08999 * 109.47187 * 59.99724 * 10 9 8 39 39 H 0.97006 * 119.99573 * 180.02562 * 14 13 11 40 40 H 1.08995 * 109.47576 * 180.02562 * 19 10 9 41 41 H 1.09007 * 109.47337 * 299.99986 * 19 10 9 42 42 H 1.08998 * 109.47111 * 59.99891 * 20 7 6 43 43 H 1.09007 * 109.47118 * 180.02562 * 20 7 6 44 44 H 1.09002 * 109.52291 * 302.31122 * 23 21 6 45 45 H 1.09000 * 109.51795 * 62.49937 * 23 21 6 46 46 H 1.09005 * 109.50215 * 297.71209 * 24 23 21 47 47 H 1.09004 * 109.49742 * 177.59957 * 24 23 21 48 48 H 1.09002 * 109.46271 * 180.80431 * 25 24 23 49 49 H 1.09000 * 109.45725 * 60.83429 * 25 24 23 50 50 H 1.00910 * 110.99909 * 297.64001 * 26 25 24 51 51 H 1.08999 * 109.46814 * 178.23855 * 27 26 25 52 52 H 1.09007 * 109.46222 * 58.27562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7103 0.0000 4 8 2.0113 2.2827 1.2946 5 8 1.6757 2.4015 -1.1536 6 7 3.7687 1.5708 -0.2307 7 6 4.3364 1.7418 -1.5703 8 6 4.9862 0.4316 -2.0200 9 6 3.9316 -0.6764 -2.0507 10 6 2.8202 -0.2955 -3.0309 11 6 1.7817 -1.3871 -3.0617 12 1 1.8561 -2.2226 -2.3812 13 6 0.7368 -1.3194 -3.9586 14 7 0.6460 -0.3019 -4.7868 15 14 -0.5501 -2.6729 -3.9972 16 1 -1.6547 -2.3325 -3.0649 17 1 -1.0882 -2.8052 -5.3749 18 1 0.0696 -3.9571 -3.5825 19 6 2.1705 1.0146 -2.5813 20 6 3.2252 2.1226 -2.5505 21 6 4.6463 1.2764 0.9048 22 1 4.2058 1.6758 1.8183 23 6 6.0160 1.9204 0.6727 24 6 6.9451 1.5579 1.8345 25 6 7.0487 0.0348 1.9424 26 7 5.7130 -0.5334 2.1646 27 6 4.8166 -0.2385 1.0397 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.0879 2.5312 -1.5484 34 1 5.7780 0.1603 -1.3216 35 1 5.4090 0.5590 -3.0165 36 1 3.5091 -0.8036 -1.0540 37 1 4.3944 -1.6097 -2.3715 38 1 3.2427 -0.1683 -4.0276 39 1 -0.0895 -0.2542 -5.4176 40 1 1.3785 1.2857 -3.2793 41 1 1.7480 0.8874 -1.5846 42 1 2.7623 3.0561 -2.2302 43 1 3.6476 2.2494 -3.5473 44 1 6.4390 1.5502 -0.2612 45 1 5.9049 3.0034 0.6193 46 1 6.5414 1.9619 2.7630 47 1 7.9345 1.9781 1.6539 48 1 7.6983 -0.2267 2.7778 49 1 7.4653 -0.3671 1.0188 50 1 5.3209 -0.2059 3.0349 51 1 3.8449 -0.6986 1.2192 52 1 5.2436 -0.6392 0.1202 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173341412.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:52 Heat of formation + Delta-G solvation = -0.480810 kcal Electronic energy + Delta-G solvation = -33133.350294 eV Core-core repulsion = 29262.664005 eV Total energy + Delta-G solvation = -3870.686289 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.47391 -39.88855 -37.71734 -37.06429 -36.06278 -34.17325 -33.91038 -32.40227 -31.65184 -30.83036 -29.33395 -26.82456 -25.11836 -24.54809 -23.73886 -23.08080 -22.59023 -21.51467 -20.73471 -19.53112 -18.63714 -18.13834 -17.40424 -17.07819 -16.70449 -16.55690 -16.40760 -16.11122 -15.84543 -15.52095 -15.03248 -14.82016 -14.59512 -14.21237 -14.17840 -14.02071 -13.77498 -13.58164 -13.45336 -13.37729 -13.25018 -13.04730 -12.94262 -12.89254 -12.69724 -12.52684 -12.35960 -12.18249 -12.13669 -11.92765 -11.89281 -11.64928 -11.54962 -11.36552 -11.31423 -10.92015 -10.71136 -10.57450 -10.19802 -10.08647 -9.78309 -9.07404 -8.01572 -6.11657 -0.63046 1.39774 1.43026 1.50098 1.68952 2.46322 2.86812 3.21524 3.28401 3.42649 3.55012 3.82765 3.88738 3.95291 4.03482 4.07151 4.16608 4.23112 4.23865 4.35773 4.39621 4.44945 4.53803 4.58972 4.68109 4.71662 4.74124 4.88874 4.91728 5.00559 5.01467 5.09790 5.11599 5.12825 5.13090 5.18135 5.21575 5.25852 5.32487 5.43274 5.46133 5.54774 5.56915 5.70484 5.82298 5.97234 6.09895 6.14657 6.35387 6.47148 6.53590 7.03471 7.55231 9.03965 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015133 B = 0.004992 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.873634 B = 5608.172039 C = 5886.232948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.650 4.650 3 S 2.586 3.414 4 O -1.004 7.004 5 O -0.958 6.958 6 N -0.972 5.972 7 C 0.166 3.834 8 C -0.126 4.126 9 C -0.117 4.117 10 C 0.024 3.976 11 C -0.519 4.519 12 H 0.056 0.944 13 C 0.019 3.981 14 N -0.914 5.914 15 Si 0.929 3.071 16 H -0.275 1.275 17 H -0.291 1.291 18 H -0.266 1.266 19 C -0.082 4.082 20 C -0.137 4.137 21 C 0.112 3.888 22 H 0.086 0.914 23 C -0.123 4.123 24 C -0.148 4.148 25 C 0.053 3.947 26 N -0.684 5.684 27 C 0.027 3.973 28 H 0.052 0.948 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.172 0.828 32 H 0.143 0.857 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.048 0.952 38 H -0.004 1.004 39 H 0.256 0.744 40 H 0.046 0.954 41 H 0.031 0.969 42 H 0.097 0.903 43 H 0.054 0.946 44 H 0.083 0.917 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.088 0.912 48 H 0.091 0.909 49 H 0.073 0.927 50 H 0.346 0.654 51 H 0.068 0.932 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.404 2.574 13.780 18.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.780 4.780 3 S 2.687 3.313 4 O -0.995 6.995 5 O -0.948 6.948 6 N -0.810 5.810 7 C 0.060 3.940 8 C -0.165 4.165 9 C -0.154 4.154 10 C 0.005 3.995 11 C -0.558 4.558 12 H 0.074 0.926 13 C -0.180 4.180 14 N -0.553 5.553 15 Si 0.756 3.244 16 H -0.200 1.200 17 H -0.217 1.217 18 H -0.190 1.190 19 C -0.121 4.121 20 C -0.177 4.177 21 C 0.005 3.995 22 H 0.104 0.896 23 C -0.162 4.162 24 C -0.188 4.188 25 C -0.076 4.076 26 N -0.313 5.313 27 C -0.104 4.104 28 H 0.071 0.929 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.190 0.810 32 H 0.161 0.839 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.014 0.986 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.048 0.952 42 H 0.115 0.885 43 H 0.073 0.927 44 H 0.102 0.898 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.106 0.894 48 H 0.110 0.890 49 H 0.091 0.909 50 H 0.164 0.836 51 H 0.086 0.914 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.976 2.825 13.561 18.311 hybrid contribution -1.479 -0.327 -0.744 1.687 sum 10.497 2.498 12.817 16.755 Atomic orbital electron populations 1.21457 0.91013 1.05345 1.02235 1.30914 1.07537 1.25333 1.14180 1.05989 0.74553 0.78846 0.71882 1.93399 1.86047 1.76822 1.43201 1.94023 1.82145 1.72489 1.46145 1.57240 1.22768 1.86918 1.14066 1.21011 0.95849 0.98059 0.79047 1.22078 0.98033 0.94615 1.01730 1.21781 0.96433 0.97469 0.99762 1.19059 0.92820 0.93812 0.93826 1.21486 1.09014 1.07093 1.18163 0.92590 1.25597 0.99757 0.97051 0.95608 1.70068 1.32019 1.31205 1.22019 0.85998 0.80416 0.80933 0.77092 1.20048 1.21738 1.19025 1.22411 0.97547 0.93621 0.98542 1.22613 0.95115 1.01708 0.98265 1.21857 0.92369 0.97353 0.87964 0.89630 1.21909 0.92902 1.00812 1.00609 1.22258 1.00477 0.98133 0.97963 1.22146 0.90492 0.91819 1.03176 1.60712 1.03552 1.62182 1.04809 1.22914 0.97844 0.93125 0.96499 0.92901 0.89358 0.90529 0.81035 0.83878 0.88426 0.89511 0.91248 0.91698 0.93363 0.98560 0.93498 0.93555 0.95167 0.88545 0.92739 0.89826 0.91346 0.91544 0.89379 0.89045 0.90854 0.83581 0.91363 0.88875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 9.84 71.98 0.71 -4.04 16 2 C -0.65 -21.68 4.69 71.98 0.34 -21.35 16 3 S 2.59 90.88 4.63 -56.49 -0.26 90.61 16 4 O -1.00 -37.68 16.77 -127.65 -2.14 -39.82 16 5 O -0.96 -40.11 10.13 -127.65 -1.29 -41.41 16 6 N -0.97 -27.89 2.06 -470.95 -0.97 -28.86 16 7 C 0.17 4.84 2.49 44.99 0.11 4.95 16 8 C -0.13 -3.54 4.62 30.59 0.14 -3.40 16 9 C -0.12 -4.16 4.19 30.59 0.13 -4.03 16 10 C 0.02 1.09 1.75 -11.54 -0.02 1.07 16 11 C -0.52 -26.58 7.04 25.60 0.18 -26.40 16 12 H 0.06 2.78 7.73 -2.91 -0.02 2.75 16 13 C 0.02 1.02 5.33 84.65 0.45 1.47 16 14 N -0.91 -52.72 11.73 21.44 0.25 -52.47 16 15 Si 0.93 42.57 29.54 68.60 2.03 44.60 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 17 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 18 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 19 C -0.08 -3.75 3.15 30.59 0.10 -3.65 16 20 C -0.14 -5.26 4.85 30.59 0.15 -5.11 16 21 C 0.11 2.56 2.52 45.05 0.11 2.67 16 22 H 0.09 2.07 7.02 -2.39 -0.02 2.05 16 23 C -0.12 -2.19 4.29 30.67 0.13 -2.06 16 24 C -0.15 -1.95 6.08 30.64 0.19 -1.77 16 25 C 0.05 0.73 6.55 86.33 0.57 1.30 16 26 N -0.68 -12.06 6.87 -514.03 -3.53 -15.59 16 27 C 0.03 0.59 4.73 86.33 0.41 1.00 16 28 H 0.05 2.01 7.95 -2.39 -0.02 1.99 16 29 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.17 6.50 2.13 -2.39 -0.01 6.49 16 32 H 0.14 3.77 6.73 -2.39 -0.02 3.75 16 33 H 0.10 2.34 7.04 -2.38 -0.02 2.32 16 34 H 0.09 1.94 4.47 -2.38 -0.01 1.93 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.06 2.14 3.22 -2.39 -0.01 2.13 16 37 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.26 14.30 8.31 -92.70 -0.77 13.53 16 40 H 0.05 2.56 6.51 -2.39 -0.02 2.54 16 41 H 0.03 1.29 0.73 -69.30 -0.05 1.24 16 42 H 0.10 3.87 5.75 -15.34 -0.09 3.78 16 43 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 44 H 0.08 1.43 5.37 -2.39 -0.01 1.41 16 45 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 47 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 48 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.35 5.34 8.86 -89.69 -0.79 4.54 16 51 H 0.07 1.55 6.29 -2.39 -0.02 1.53 16 52 H 0.09 2.11 4.55 -2.38 -0.01 2.10 16 Total: -1.00 -65.99 357.37 -2.19 -68.18 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: 0.03 Total: 34.12 kcal Atomic # 6 Polarization: -63.05 SS G_CDS: 3.69 Total: -59.37 kcal Atomic # 7 Polarization: -92.67 SS G_CDS: -4.25 Total: -96.92 kcal Atomic # 8 Polarization: -77.80 SS G_CDS: -3.43 Total: -81.23 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: 90.88 SS G_CDS: -0.26 Total: 90.61 kcal Total: -65.99 -2.19 -68.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173341412.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.703 kcal (2) G-P(sol) polarization free energy of solvation -65.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds