Wall clock time and date at job start Wed Apr 1 2020 03:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46947 * 2 1 4 4 C 1.53005 * 109.46941 * 240.00390 * 2 1 3 5 5 O 1.45199 * 109.47527 * 120.00172 * 2 1 3 6 6 C 1.34641 * 116.99398 * 59.99641 * 5 2 1 7 7 O 1.21511 * 120.00372 * 0.02562 * 6 5 2 8 8 N 1.34776 * 119.99846 * 179.97438 * 6 5 2 9 9 C 1.46498 * 120.00350 * 180.02562 * 8 6 5 10 10 C 1.50695 * 109.46983 * 90.00152 * 9 8 6 11 11 H 1.07999 * 120.00538 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99661 * 180.02562 * 10 9 8 13 13 N 1.31520 * 120.00186 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00030 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47297 * 89.99863 * 14 12 10 16 16 H 1.48503 * 109.47261 * 330.00044 * 14 12 10 17 17 H 1.48500 * 109.47454 * 210.00037 * 14 12 10 18 18 C 1.46506 * 119.99825 * 0.02562 * 8 6 5 19 19 C 1.50700 * 109.46968 * 269.99704 * 18 8 6 20 20 O 1.21284 * 120.00170 * 0.02562 * 19 18 8 21 21 N 1.34781 * 119.99801 * 179.97438 * 19 18 8 22 22 C 1.46498 * 119.99749 * 180.02562 * 21 19 18 23 23 C 1.53004 * 109.46965 * 180.02562 * 22 21 19 24 24 H 1.08994 * 112.85029 * 43.80510 * 23 22 21 25 25 C 1.53782 * 113.61297 * 174.99994 * 23 22 21 26 26 C 1.53781 * 87.08059 * 139.98005 * 25 23 22 27 27 H 1.08998 * 113.61783 * 219.93711 * 26 25 23 28 28 F 1.39904 * 113.61456 * 89.11428 * 26 25 23 29 29 C 1.53780 * 87.08153 * 334.56673 * 26 25 23 30 30 H 1.09004 * 109.47051 * 299.99838 * 1 2 3 31 31 H 1.08997 * 109.47547 * 59.99713 * 1 2 3 32 32 H 1.09004 * 109.46999 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46735 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47506 * 300.00072 * 3 2 1 35 35 H 1.08998 * 109.46807 * 60.00825 * 3 2 1 36 36 H 1.09004 * 109.47095 * 300.00196 * 4 2 1 37 37 H 1.08997 * 109.47085 * 59.99613 * 4 2 1 38 38 H 1.08999 * 109.47290 * 179.97438 * 4 2 1 39 39 H 1.09002 * 109.46847 * 329.99851 * 9 8 6 40 40 H 1.09000 * 109.46849 * 210.00231 * 9 8 6 41 41 H 0.97001 * 119.99697 * 359.97438 * 13 12 10 42 42 H 1.09002 * 109.47128 * 30.00007 * 18 8 6 43 43 H 1.08996 * 109.47091 * 149.99756 * 18 8 6 44 44 H 0.97001 * 120.00116 * 0.02562 * 21 19 18 45 45 H 1.09002 * 109.47469 * 300.00494 * 22 21 19 46 46 H 1.08996 * 109.47198 * 60.00518 * 22 21 19 47 47 H 1.08996 * 113.61607 * 254.52777 * 25 23 22 48 48 H 1.09005 * 113.61633 * 25.35048 * 25 23 22 49 49 H 1.08994 * 113.61686 * 270.88435 * 29 26 25 50 50 H 1.08999 * 113.61685 * 139.97793 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3382 7 8 0.9515 -2.5097 0.5034 8 7 2.0681 -2.6659 2.4164 9 6 1.6749 -4.0673 2.5823 10 6 2.7001 -4.9574 1.9284 11 1 3.5585 -4.5227 1.4379 12 6 2.5416 -6.3268 1.9555 13 7 1.4961 -6.8562 2.5525 14 14 3.8120 -7.4302 1.1444 15 1 4.8647 -7.7817 2.1311 16 1 4.4276 -6.7161 -0.0029 17 1 3.1538 -8.6701 0.6600 18 6 2.9134 -2.0182 3.4226 19 6 4.3632 -2.2058 3.0567 20 8 4.6611 -2.8196 2.0540 21 7 5.3288 -1.6905 3.8433 22 6 6.7382 -1.8725 3.4873 23 6 7.6210 -1.1962 4.5382 24 1 7.2897 -1.3910 5.5581 25 6 9.1253 -1.4324 4.3234 26 6 9.3336 0.0370 4.7262 27 1 10.0882 0.5504 4.1303 28 9 9.5095 0.2215 6.1018 29 6 7.8933 0.2897 4.2500 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8901 36 1 1.6766 -1.7489 -1.2494 37 1 1.6766 -0.2073 -2.1393 38 1 3.1300 -0.7208 -1.2496 39 1 0.7028 -4.2295 2.1166 40 1 1.6129 -4.3039 3.6446 41 1 0.8366 -6.2832 2.9740 42 1 2.6829 -0.9535 3.4599 43 1 2.7241 -2.4653 4.3984 44 1 5.0906 -1.1993 4.6450 45 1 6.9691 -2.9371 3.4500 46 1 6.9271 -1.4253 2.5114 47 1 9.5603 -2.1435 5.0257 48 1 9.3905 -1.6444 3.2876 49 1 7.8218 0.5499 3.1940 50 1 7.3336 0.9688 4.8932 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184860324.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:41 Heat of formation + Delta-G solvation = -146.742653 kcal Electronic energy + Delta-G solvation = -31893.153767 eV Core-core repulsion = 27449.911913 eV Total energy + Delta-G solvation = -4443.241854 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -47.97315 -40.28501 -39.43181 -38.32053 -36.86173 -34.79935 -34.01010 -33.65067 -32.56135 -29.21068 -27.34224 -27.22411 -27.12761 -26.25965 -26.02461 -23.21341 -22.96147 -21.11674 -20.54173 -19.77631 -18.83149 -17.59103 -17.06239 -16.94418 -16.40546 -16.11522 -15.92541 -15.66256 -15.42798 -15.29810 -15.08951 -14.45645 -14.20785 -13.89545 -13.79330 -13.59508 -13.32705 -13.11228 -12.95602 -12.83629 -12.72290 -12.43337 -12.34492 -11.97955 -11.74406 -11.68122 -11.63926 -11.42316 -11.30186 -11.25509 -11.12789 -10.96409 -10.75403 -10.65342 -10.51419 -10.48045 -10.01677 -9.97586 -9.71016 -9.30532 -8.86686 -8.72192 -8.25467 -7.70653 -6.22800 -3.92383 2.76508 3.14716 3.28029 3.51658 3.58133 3.71294 3.75992 3.87904 3.97244 4.27862 4.31075 4.44079 4.50166 4.67013 4.93048 4.95359 5.01706 5.11994 5.13419 5.25109 5.26996 5.35421 5.39591 5.49242 5.50705 5.55269 5.57481 5.58878 5.66889 5.74961 5.76280 5.81116 5.88087 5.88920 6.07521 6.09247 6.12047 6.52193 6.61574 6.65625 6.67501 6.91768 7.21234 7.31056 7.74266 8.14312 8.21228 8.57666 8.81843 9.06713 9.15004 9.75541 11.13742 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007415 B = 0.003928 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3775.291973 B = 7126.230137 C = 9960.649388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.137 3.863 3 C -0.137 4.137 4 C -0.182 4.182 5 O -0.374 6.374 6 C 0.653 3.347 7 O -0.559 6.559 8 N -0.560 5.560 9 C 0.251 3.749 10 C -0.598 4.598 11 H 0.080 0.920 12 C 0.016 3.984 13 N -0.920 5.920 14 Si 1.074 2.926 15 H -0.291 1.291 16 H -0.289 1.289 17 H -0.286 1.286 18 C 0.105 3.895 19 C 0.490 3.510 20 O -0.493 6.493 21 N -0.741 5.741 22 C 0.134 3.866 23 C -0.122 4.122 24 H 0.101 0.899 25 C -0.153 4.153 26 C 0.061 3.939 27 H 0.096 0.904 28 F -0.199 7.199 29 C -0.156 4.156 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.038 0.962 40 H 0.024 0.976 41 H 0.264 0.736 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.395 0.605 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.083 0.917 48 H 0.103 0.897 49 H 0.101 0.899 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.117 19.675 3.795 22.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.100 3.900 3 C -0.194 4.194 4 C -0.239 4.239 5 O -0.290 6.290 6 C 0.407 3.593 7 O -0.448 6.448 8 N -0.297 5.297 9 C 0.133 3.867 10 C -0.637 4.637 11 H 0.098 0.902 12 C -0.186 4.186 13 N -0.558 5.558 14 Si 0.903 3.097 15 H -0.218 1.218 16 H -0.215 1.215 17 H -0.212 1.212 18 C -0.024 4.024 19 C 0.274 3.726 20 O -0.365 6.365 21 N -0.396 5.396 22 C 0.010 3.990 23 C -0.140 4.140 24 H 0.119 0.881 25 C -0.191 4.191 26 C 0.025 3.975 27 H 0.114 0.886 28 F -0.180 7.180 29 C -0.194 4.194 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.042 0.958 41 H 0.074 0.926 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.228 0.772 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.102 0.898 48 H 0.121 0.879 49 H 0.119 0.881 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.459 17.482 2.422 20.516 hybrid contribution -0.340 1.816 0.851 2.035 sum 10.119 19.299 3.274 22.035 Atomic orbital electron populations 1.22509 0.94470 1.05225 1.01707 1.21875 0.93990 0.91166 0.83008 1.21818 1.01978 0.93113 1.02500 1.22485 1.01488 1.03935 0.95998 1.86230 1.72109 1.24958 1.45702 1.17917 0.79396 0.79640 0.82323 1.90851 1.41875 1.70038 1.42014 1.46721 1.49709 1.13448 1.19857 1.19472 0.97326 0.73470 0.96458 1.22684 1.09788 0.93021 1.38234 0.90202 1.25732 0.99962 0.96443 0.96511 1.70799 1.11133 1.38925 1.34899 0.83476 0.74832 0.75310 0.76122 1.21783 1.21516 1.21219 1.21220 0.87875 0.99420 0.93863 1.21373 0.88280 0.78876 0.84033 1.90766 1.82959 1.37333 1.25408 1.45970 1.05789 1.59077 1.28786 1.21211 0.80127 1.00786 0.96899 1.22835 0.95208 0.95547 1.00433 0.88089 1.23546 0.95807 0.96028 1.03715 1.22399 0.99027 0.98583 0.77477 0.88602 1.92813 1.96506 1.96168 1.32480 1.23674 0.95271 0.97319 1.03135 0.92570 0.91702 0.89132 0.91812 0.90623 0.91858 0.88949 0.91869 0.92416 0.94417 0.95805 0.92580 0.88310 0.87924 0.77179 0.91292 0.91627 0.89840 0.87880 0.88057 0.90075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.64 8.37 37.16 0.31 -2.33 16 2 C 0.14 2.10 1.13 -90.62 -0.10 2.00 16 3 C -0.14 -1.53 8.85 37.16 0.33 -1.20 16 4 C -0.18 -2.96 8.37 37.16 0.31 -2.64 16 5 O -0.37 -6.91 8.71 -40.33 -0.35 -7.26 16 6 C 0.65 14.58 7.70 54.05 0.42 14.99 16 7 O -0.56 -14.04 11.46 -19.28 -0.22 -14.26 16 8 N -0.56 -12.38 2.01 -182.25 -0.37 -12.75 16 9 C 0.25 6.57 4.51 -5.20 -0.02 6.55 16 10 C -0.60 -17.70 8.97 -34.44 -0.31 -18.01 16 11 H 0.08 2.50 5.50 -52.49 -0.29 2.21 16 12 C 0.02 0.48 5.46 -17.82 -0.10 0.39 16 13 N -0.92 -28.57 13.65 55.43 0.76 -27.81 16 14 Si 1.07 27.37 29.90 -169.99 -5.08 22.28 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 17 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 18 C 0.10 1.75 5.94 -5.19 -0.03 1.72 16 19 C 0.49 8.69 7.90 -10.98 -0.09 8.60 16 20 O -0.49 -11.46 13.76 5.55 0.08 -11.39 16 21 N -0.74 -9.26 5.56 -60.29 -0.33 -9.60 16 22 C 0.13 1.54 5.51 -4.04 -0.02 1.52 16 23 C -0.12 -1.00 3.73 -89.80 -0.34 -1.34 16 24 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 25 C -0.15 -1.12 7.54 -25.92 -0.20 -1.31 16 26 C 0.06 0.44 5.69 -25.92 -0.15 0.29 16 27 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 28 F -0.20 -1.95 17.38 2.25 0.04 -1.92 16 29 C -0.16 -1.09 7.53 -25.92 -0.20 -1.29 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.62 5.88 -51.93 -0.31 1.32 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 1.86 5.88 -51.93 -0.31 1.56 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.04 1.09 7.29 -51.93 -0.38 0.71 16 40 H 0.02 0.61 7.76 -51.93 -0.40 0.21 16 41 H 0.26 8.07 7.22 -40.82 -0.29 7.78 16 42 H 0.10 1.33 7.38 -51.93 -0.38 0.95 16 43 H 0.10 1.49 7.89 -51.93 -0.41 1.08 16 44 H 0.39 3.58 8.47 -40.82 -0.35 3.23 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.07 0.79 7.84 -51.93 -0.41 0.39 16 47 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.10 0.66 8.10 -51.93 -0.42 0.24 16 49 H 0.10 0.66 7.90 -51.93 -0.41 0.25 16 50 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 405.78 15.07 6.11 6.11 Total: -1.00 -37.61 405.78 -7.77 -45.38 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -8.22 Total: 3.28 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -0.18 Total: 7.92 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.05 Total: -50.16 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -0.50 Total: -32.91 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 27.37 SS G_CDS: -5.08 Total: 22.28 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.61 -7.77 -45.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184860324.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.366 kcal (2) G-P(sol) polarization free energy of solvation -37.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds