Wall clock time and date at job start Wed Apr 1 2020 03:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46947 * 2 1 4 4 C 1.53005 * 109.46941 * 240.00390 * 2 1 3 5 5 O 1.45199 * 109.47527 * 120.00172 * 2 1 3 6 6 C 1.34641 * 116.99398 * 59.99641 * 5 2 1 7 7 O 1.21511 * 120.00372 * 0.02562 * 6 5 2 8 8 N 1.34776 * 119.99846 * 179.97438 * 6 5 2 9 9 C 1.46498 * 120.00350 * 180.02562 * 8 6 5 10 10 C 1.50695 * 109.46983 * 90.00152 * 9 8 6 11 11 H 1.07999 * 120.00538 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99661 * 180.02562 * 10 9 8 13 13 N 1.31520 * 120.00186 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00030 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47297 * 89.99863 * 14 12 10 16 16 H 1.48503 * 109.47261 * 330.00044 * 14 12 10 17 17 H 1.48500 * 109.47454 * 210.00037 * 14 12 10 18 18 C 1.46506 * 119.99825 * 0.02562 * 8 6 5 19 19 C 1.50700 * 109.46968 * 269.99704 * 18 8 6 20 20 O 1.21284 * 120.00170 * 0.02562 * 19 18 8 21 21 N 1.34781 * 119.99801 * 179.97438 * 19 18 8 22 22 C 1.46498 * 119.99749 * 180.02562 * 21 19 18 23 23 C 1.53004 * 109.46965 * 180.02562 * 22 21 19 24 24 H 1.08994 * 112.85029 * 43.80510 * 23 22 21 25 25 C 1.53782 * 113.61297 * 174.99994 * 23 22 21 26 26 C 1.53781 * 87.08059 * 139.98005 * 25 23 22 27 27 H 1.08998 * 113.61783 * 219.93711 * 26 25 23 28 28 F 1.39904 * 113.61456 * 89.11428 * 26 25 23 29 29 C 1.53780 * 87.08153 * 334.56673 * 26 25 23 30 30 H 1.09004 * 109.47051 * 299.99838 * 1 2 3 31 31 H 1.08997 * 109.47547 * 59.99713 * 1 2 3 32 32 H 1.09004 * 109.46999 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46735 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47506 * 300.00072 * 3 2 1 35 35 H 1.08998 * 109.46807 * 60.00825 * 3 2 1 36 36 H 1.09004 * 109.47095 * 300.00196 * 4 2 1 37 37 H 1.08997 * 109.47085 * 59.99613 * 4 2 1 38 38 H 1.08999 * 109.47290 * 179.97438 * 4 2 1 39 39 H 1.09002 * 109.46847 * 329.99851 * 9 8 6 40 40 H 1.09000 * 109.46849 * 210.00231 * 9 8 6 41 41 H 0.97001 * 119.99697 * 359.97438 * 13 12 10 42 42 H 1.09002 * 109.47128 * 30.00007 * 18 8 6 43 43 H 1.08996 * 109.47091 * 149.99756 * 18 8 6 44 44 H 0.97001 * 120.00116 * 0.02562 * 21 19 18 45 45 H 1.09002 * 109.47469 * 300.00494 * 22 21 19 46 46 H 1.08996 * 109.47198 * 60.00518 * 22 21 19 47 47 H 1.08996 * 113.61607 * 254.52777 * 25 23 22 48 48 H 1.09005 * 113.61633 * 25.35048 * 25 23 22 49 49 H 1.08994 * 113.61686 * 270.88435 * 29 26 25 50 50 H 1.08999 * 113.61685 * 139.97793 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3382 7 8 0.9515 -2.5097 0.5034 8 7 2.0681 -2.6659 2.4164 9 6 1.6749 -4.0673 2.5823 10 6 2.7001 -4.9574 1.9284 11 1 3.5585 -4.5227 1.4379 12 6 2.5416 -6.3268 1.9555 13 7 1.4961 -6.8562 2.5525 14 14 3.8120 -7.4302 1.1444 15 1 4.8647 -7.7817 2.1311 16 1 4.4276 -6.7161 -0.0029 17 1 3.1538 -8.6701 0.6600 18 6 2.9134 -2.0182 3.4226 19 6 4.3632 -2.2058 3.0567 20 8 4.6611 -2.8196 2.0540 21 7 5.3288 -1.6905 3.8433 22 6 6.7382 -1.8725 3.4873 23 6 7.6210 -1.1962 4.5382 24 1 7.2897 -1.3910 5.5581 25 6 9.1253 -1.4324 4.3234 26 6 9.3336 0.0370 4.7262 27 1 10.0882 0.5504 4.1303 28 9 9.5095 0.2215 6.1018 29 6 7.8933 0.2897 4.2500 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8901 36 1 1.6766 -1.7489 -1.2494 37 1 1.6766 -0.2073 -2.1393 38 1 3.1300 -0.7208 -1.2496 39 1 0.7028 -4.2295 2.1166 40 1 1.6129 -4.3039 3.6446 41 1 0.8366 -6.2832 2.9740 42 1 2.6829 -0.9535 3.4599 43 1 2.7241 -2.4653 4.3984 44 1 5.0906 -1.1993 4.6450 45 1 6.9691 -2.9371 3.4500 46 1 6.9271 -1.4253 2.5114 47 1 9.5603 -2.1435 5.0257 48 1 9.3905 -1.6444 3.2876 49 1 7.8218 0.5499 3.1940 50 1 7.3336 0.9688 4.8932 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184860324.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:40 Heat of formation + Delta-G solvation = -171.987620 kcal Electronic energy + Delta-G solvation = -31894.248471 eV Core-core repulsion = 27449.911913 eV Total energy + Delta-G solvation = -4444.336558 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.194 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.62986 -41.85133 -40.66699 -39.22410 -38.37678 -36.55448 -35.28361 -35.23383 -34.46587 -30.56325 -28.94629 -28.37418 -28.26838 -27.55087 -26.77951 -25.30266 -23.82089 -22.67687 -21.79981 -20.61208 -20.22135 -19.24041 -18.82371 -18.36525 -17.65076 -17.30431 -16.97141 -16.77624 -16.52410 -16.46362 -16.08301 -15.70336 -15.66389 -15.53678 -15.24183 -14.97456 -14.73891 -14.37531 -14.32080 -13.84313 -13.76692 -13.56657 -13.37571 -13.29318 -13.22424 -13.08827 -12.92370 -12.83288 -12.70936 -12.52402 -12.47612 -12.22493 -12.14453 -12.02374 -11.98828 -11.56360 -11.34736 -11.25806 -11.16102 -10.97927 -10.61340 -10.55082 -9.99574 -9.59916 -8.59321 -6.30774 1.20528 1.44268 1.54330 1.74491 1.76740 1.85943 2.31196 2.53386 2.98142 3.16961 3.28728 3.36928 3.62016 3.66945 3.78549 3.81274 3.92799 3.96309 3.99980 4.10750 4.27658 4.30195 4.43838 4.47177 4.59531 4.63060 4.69376 4.74509 4.75286 4.75638 4.82002 4.82249 4.88470 4.95626 4.97176 5.00535 5.05381 5.10792 5.29786 5.34436 5.42745 5.47041 5.51553 5.57356 5.90905 6.37833 6.45004 6.62160 6.67873 7.35141 7.45633 7.50187 8.75997 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007415 B = 0.003928 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3775.291973 B = 7126.230137 C = 9960.649388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.121 3.879 3 C -0.127 4.127 4 C -0.179 4.179 5 O -0.365 6.365 6 C 0.650 3.350 7 O -0.597 6.597 8 N -0.568 5.568 9 C 0.265 3.735 10 C -0.604 4.604 11 H 0.061 0.939 12 C -0.031 4.031 13 N -0.938 5.938 14 Si 1.113 2.887 15 H -0.269 1.269 16 H -0.291 1.291 17 H -0.278 1.278 18 C 0.098 3.902 19 C 0.488 3.512 20 O -0.557 6.557 21 N -0.716 5.716 22 C 0.135 3.865 23 C -0.118 4.118 24 H 0.104 0.896 25 C -0.152 4.152 26 C 0.060 3.940 27 H 0.119 0.881 28 F -0.214 7.214 29 C -0.148 4.148 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.097 0.903 38 H 0.049 0.951 39 H 0.004 0.996 40 H 0.033 0.967 41 H 0.256 0.744 42 H 0.137 0.863 43 H 0.127 0.873 44 H 0.415 0.585 45 H 0.045 0.955 46 H 0.061 0.939 47 H 0.080 0.920 48 H 0.112 0.888 49 H 0.109 0.891 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.488 22.553 4.429 25.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.085 3.915 3 C -0.184 4.184 4 C -0.236 4.236 5 O -0.280 6.280 6 C 0.405 3.595 7 O -0.488 6.488 8 N -0.305 5.305 9 C 0.145 3.855 10 C -0.643 4.643 11 H 0.079 0.921 12 C -0.228 4.228 13 N -0.577 5.577 14 Si 0.937 3.063 15 H -0.194 1.194 16 H -0.218 1.218 17 H -0.203 1.203 18 C -0.028 4.028 19 C 0.273 3.727 20 O -0.434 6.434 21 N -0.371 5.371 22 C 0.011 3.989 23 C -0.137 4.137 24 H 0.122 0.878 25 C -0.191 4.191 26 C 0.024 3.976 27 H 0.137 0.863 28 F -0.195 7.195 29 C -0.186 4.186 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.116 0.884 38 H 0.069 0.931 39 H 0.022 0.978 40 H 0.050 0.950 41 H 0.065 0.935 42 H 0.155 0.845 43 H 0.145 0.855 44 H 0.252 0.748 45 H 0.063 0.937 46 H 0.079 0.921 47 H 0.099 0.901 48 H 0.130 0.870 49 H 0.128 0.872 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.860 20.444 3.138 23.842 hybrid contribution -0.762 1.037 0.631 1.433 sum 11.097 21.480 3.769 24.470 Atomic orbital electron populations 1.22448 0.93865 1.03165 1.03919 1.22441 0.94791 0.92992 0.81293 1.21834 1.02060 0.89713 1.04767 1.22442 1.00919 1.01830 0.98415 1.86237 1.71813 1.22700 1.47249 1.18075 0.78862 0.80758 0.81813 1.90840 1.43435 1.71222 1.43344 1.46561 1.50597 1.12205 1.21136 1.18986 0.94855 0.75751 0.95940 1.22875 1.09708 0.93752 1.37969 0.92097 1.27002 1.01014 0.98253 0.96573 1.70896 1.11769 1.38798 1.36236 0.82955 0.73508 0.74072 0.75784 1.19446 1.21752 1.20333 1.21621 0.86578 1.01370 0.93273 1.21549 0.89327 0.78245 0.83564 1.90746 1.83844 1.40548 1.28259 1.45761 1.05578 1.57413 1.28386 1.21260 0.79772 0.99760 0.98060 1.22807 0.95050 0.96507 0.99298 0.87820 1.23585 0.94807 0.96409 1.04260 1.22540 0.99865 0.98442 0.76746 0.86347 1.92785 1.96616 1.96227 1.33903 1.23652 0.95103 0.96034 1.03778 0.91160 0.88657 0.93243 0.91708 0.87629 0.90297 0.93611 0.88419 0.93148 0.97801 0.94955 0.93458 0.84504 0.85503 0.74765 0.93692 0.92079 0.90125 0.87004 0.87231 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.92 8.37 71.98 0.60 -4.32 16 2 C 0.12 3.55 1.13 -10.79 -0.01 3.54 16 3 C -0.13 -2.37 8.85 71.98 0.64 -1.73 16 4 C -0.18 -5.79 8.37 71.98 0.60 -5.19 16 5 O -0.36 -13.26 8.71 -55.50 -0.48 -13.74 16 6 C 0.65 29.81 7.70 129.79 1.00 30.81 16 7 O -0.60 -31.67 11.46 19.81 0.23 -31.44 16 8 N -0.57 -25.61 2.01 -960.91 -1.94 -27.55 16 9 C 0.26 14.41 4.51 85.63 0.39 14.79 16 10 C -0.60 -36.99 8.97 25.60 0.23 -36.76 16 11 H 0.06 3.97 5.50 -2.91 -0.02 3.95 16 12 C -0.03 -1.89 5.46 84.65 0.46 -1.43 16 13 N -0.94 -59.57 13.65 21.45 0.29 -59.27 16 14 Si 1.11 56.04 29.90 68.60 2.05 58.09 16 15 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 16 H -0.29 -14.62 7.11 99.48 0.71 -13.92 16 17 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 18 C 0.10 3.16 5.94 85.63 0.51 3.67 16 19 C 0.49 17.07 7.90 87.66 0.69 17.77 16 20 O -0.56 -26.57 13.76 -3.04 -0.04 -26.61 16 21 N -0.72 -16.86 5.56 -463.05 -2.57 -19.43 16 22 C 0.14 3.00 5.51 86.38 0.48 3.47 16 23 C -0.12 -1.72 3.73 -10.27 -0.04 -1.76 16 24 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 25 C -0.15 -1.96 7.54 31.12 0.23 -1.73 16 26 C 0.06 0.71 5.69 31.12 0.18 0.89 16 27 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 28 F -0.21 -3.78 17.38 44.97 0.78 -3.00 16 29 C -0.15 -1.67 7.53 31.12 0.23 -1.43 16 30 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.05 1.82 5.88 -2.39 -0.01 1.80 16 33 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.04 1.93 5.88 -2.39 -0.01 1.91 16 37 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.00 0.24 7.29 -2.39 -0.02 0.23 16 40 H 0.03 1.70 7.76 -2.39 -0.02 1.68 16 41 H 0.26 16.18 7.22 -92.71 -0.67 15.51 16 42 H 0.14 3.33 7.38 -2.39 -0.02 3.31 16 43 H 0.13 3.44 7.89 -2.39 -0.02 3.42 16 44 H 0.42 6.41 8.47 -92.71 -0.79 5.63 16 45 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.06 1.44 7.84 -2.39 -0.02 1.42 16 47 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.11 1.25 8.10 -2.38 -0.02 1.23 16 49 H 0.11 1.10 7.90 -2.39 -0.02 1.08 16 50 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -87.43 405.78 4.77 -82.66 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.26 Total: 19.70 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: 6.19 Total: 20.58 kcal Atomic # 7 Polarization: -102.04 SS G_CDS: -4.21 Total: -106.25 kcal Atomic # 8 Polarization: -71.49 SS G_CDS: -0.30 Total: -71.79 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.78 Total: -3.00 kcal Atomic # 14 Polarization: 56.04 SS G_CDS: 2.05 Total: 58.09 kcal Total: -87.43 4.77 -82.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184860324.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.328 kcal (2) G-P(sol) polarization free energy of solvation -87.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds