Wall clock time and date at job start Wed Apr 1 2020 03:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20766 * 119.99895 * 2 1 4 4 C 1.50699 * 119.99898 * 179.97438 * 2 1 3 5 5 C 1.53000 * 109.46760 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.46845 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.46974 * 180.02562 * 6 5 4 8 8 O 1.21284 * 120.00518 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00241 * 180.02562 * 7 6 5 10 10 C 1.48112 * 127.03853 * 179.70573 * 9 7 6 11 11 C 1.54589 * 103.42379 * 219.28428 * 10 9 7 12 12 H 1.08998 * 110.58009 * 81.17045 * 11 10 9 13 13 C 1.50698 * 110.83534 * 204.44476 * 11 10 9 14 14 C 1.38234 * 119.99798 * 53.28650 * 13 11 10 15 15 C 1.38241 * 119.99712 * 179.81333 * 14 13 11 16 16 C 1.38231 * 120.00121 * 0.41526 * 15 14 13 17 17 C 1.38236 * 120.00172 * 359.82176 * 16 15 14 18 18 C 1.38235 * 119.99695 * 359.97438 * 17 16 15 19 19 C 1.54617 * 102.91178 * 322.86582 * 11 10 9 20 20 H 1.09000 * 110.32728 * 262.80496 * 19 11 10 21 21 N 1.46500 * 110.32605 * 140.59179 * 19 11 10 22 22 C 1.36940 * 120.00239 * 157.92495 * 21 19 11 23 23 H 1.08002 * 119.99726 * 359.97438 * 22 21 19 24 24 C 1.38809 * 120.00222 * 179.97438 * 22 21 19 25 25 N 1.31615 * 120.00106 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00090 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47132 * 89.99866 * 26 24 22 28 28 H 1.48498 * 109.47688 * 210.00347 * 26 24 22 29 29 H 1.48503 * 109.47266 * 330.00314 * 26 24 22 30 30 C 1.47489 * 127.03006 * 0.02562 * 9 7 6 31 31 H 1.09002 * 109.47152 * 90.00252 * 1 2 3 32 32 H 1.09001 * 109.46980 * 330.00352 * 1 2 3 33 33 H 1.09004 * 109.47113 * 210.00333 * 1 2 3 34 34 H 1.09000 * 109.47058 * 299.99766 * 4 2 1 35 35 H 1.08999 * 109.47356 * 60.00265 * 4 2 1 36 36 H 1.09000 * 109.46950 * 299.99595 * 5 4 2 37 37 H 1.08996 * 109.47878 * 60.00082 * 5 4 2 38 38 H 1.09000 * 109.46864 * 299.99462 * 6 5 4 39 39 H 1.08999 * 109.47464 * 59.99908 * 6 5 4 40 40 H 1.09002 * 110.65742 * 337.76825 * 10 9 7 41 41 H 1.09002 * 110.66253 * 100.88201 * 10 9 7 42 42 H 1.07998 * 120.00413 * 359.97438 * 14 13 11 43 43 H 1.08002 * 119.99450 * 180.21231 * 15 14 13 44 44 H 1.08006 * 119.99773 * 179.79073 * 16 15 14 45 45 H 1.07996 * 119.99921 * 179.97438 * 17 16 15 46 46 H 1.08001 * 119.99572 * 179.97438 * 18 17 16 47 47 H 0.97002 * 120.00175 * 337.92618 * 21 19 11 48 48 H 0.97006 * 119.99980 * 179.97438 * 25 24 22 49 49 H 1.08990 * 109.91241 * 273.88388 * 30 9 7 50 50 H 1.08998 * 109.91167 * 34.97074 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7647 -1.0255 0.0011 6 6 4.5298 -2.3505 0.0011 7 6 6.0114 -2.0751 0.0022 8 8 6.4157 -0.9317 0.0025 9 7 6.8873 -3.0995 0.0018 10 6 8.3656 -3.0092 -0.0033 11 6 8.7916 -4.1514 -0.9539 12 1 8.7053 -3.8366 -1.9939 13 6 10.1947 -4.6082 -0.6479 14 6 10.5353 -4.9799 0.6392 15 6 11.8214 -5.4027 0.9191 16 6 12.7691 -5.4455 -0.0863 17 6 12.4298 -5.0691 -1.3725 18 6 11.1427 -4.6504 -1.6532 19 6 7.7704 -5.2670 -0.6330 20 1 8.1971 -5.9792 0.0733 21 7 7.3608 -5.9510 -1.8621 22 6 6.8429 -7.2172 -1.8012 23 1 6.7368 -7.7118 -0.8469 24 6 6.4544 -7.8650 -2.9657 25 7 6.5842 -7.2624 -4.1286 26 14 5.7486 -9.5925 -2.8826 27 1 4.2736 -9.5176 -2.7271 28 1 6.0781 -10.3227 -4.1329 29 1 6.3328 -10.3106 -1.7214 30 6 6.5696 -4.5398 -0.0002 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 0.8900 0.5138 33 1 -0.3633 -0.8900 0.5139 34 1 1.9972 -1.8762 0.8908 35 1 1.9972 -1.8771 -0.8891 36 1 4.0284 -0.4541 -0.8890 37 1 4.0278 -0.4537 0.8910 38 1 4.2662 -2.9222 0.8909 39 1 4.2667 -2.9220 -0.8891 40 1 8.6906 -2.0444 -0.3926 41 1 8.7646 -3.1755 0.9974 42 1 9.7961 -4.9426 1.4256 43 1 12.0865 -5.6963 1.9240 44 1 13.7748 -5.7726 0.1331 45 1 13.1703 -5.1022 -2.1579 46 1 10.8777 -4.3560 -2.6580 47 1 7.4565 -5.5069 -2.7192 48 1 6.3130 -7.7153 -4.9425 49 1 6.4209 -4.8885 1.0217 50 1 5.6702 -4.7207 -0.5886 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211530330.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:50 Heat of formation + Delta-G solvation = -44.209758 kcal Electronic energy + Delta-G solvation = -29651.632570 eV Core-core repulsion = 25643.606101 eV Total energy + Delta-G solvation = -4008.026469 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.15100 -39.61718 -38.90134 -37.23812 -34.31664 -34.03537 -32.61126 -30.95146 -30.93028 -30.70344 -28.95307 -27.56526 -27.31276 -24.38925 -23.45714 -22.51963 -21.96329 -21.19170 -19.78188 -19.71652 -18.82312 -17.40305 -16.82822 -16.67718 -16.21488 -15.97850 -15.63327 -15.18721 -15.13102 -14.83821 -14.76238 -14.43833 -14.19197 -13.57418 -13.41157 -13.25890 -13.20844 -13.04030 -12.74416 -12.61691 -12.46502 -12.39263 -12.10931 -11.92926 -11.82297 -11.66823 -11.56933 -11.31177 -10.97577 -10.95593 -10.80347 -10.79592 -10.65796 -10.39437 -10.17179 -9.86889 -9.82338 -9.53617 -9.11853 -8.70388 -8.52539 -8.31260 -7.10125 -5.88576 -3.19294 1.56318 1.61973 1.80373 2.88495 3.19238 3.35302 3.41668 3.43130 3.88671 3.97573 4.47404 4.60087 4.77934 4.87261 4.89651 4.97307 4.99296 5.05155 5.12004 5.15823 5.19274 5.26169 5.28802 5.37299 5.45160 5.47434 5.51105 5.56294 5.61769 5.64589 5.68909 5.72705 5.78486 5.81458 5.98720 6.07995 6.10532 6.18868 6.24486 6.26654 6.30248 6.37057 6.48712 6.63508 6.69428 6.79685 6.91744 7.21471 7.35467 7.58919 7.83975 8.28269 8.41384 9.40536 9.94079 10.28981 11.33227 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007544 B = 0.003143 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3710.833133 B = 8905.373160 C =11974.508457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.352 3.648 3 O -0.456 6.456 4 C -0.175 4.175 5 C -0.095 4.095 6 C -0.136 4.136 7 C 0.531 3.469 8 O -0.553 6.553 9 N -0.617 5.617 10 C 0.116 3.884 11 C -0.074 4.074 12 H 0.091 0.909 13 C -0.052 4.052 14 C -0.116 4.116 15 C -0.121 4.121 16 C -0.131 4.131 17 C -0.119 4.119 18 C -0.107 4.107 19 C 0.180 3.820 20 H 0.069 0.931 21 N -0.713 5.713 22 C -0.247 4.247 23 H 0.072 0.928 24 C -0.007 4.007 25 N -0.928 5.928 26 Si 0.906 3.094 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.281 1.281 30 C 0.071 3.929 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.386 0.614 48 H 0.257 0.743 49 H 0.056 0.944 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.737 7.352 10.168 12.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.227 3.773 3 O -0.330 6.330 4 C -0.212 4.212 5 C -0.133 4.133 6 C -0.176 4.176 7 C 0.320 3.680 8 O -0.431 6.431 9 N -0.350 5.350 10 C -0.007 4.007 11 C -0.094 4.094 12 H 0.110 0.890 13 C -0.053 4.053 14 C -0.134 4.134 15 C -0.139 4.139 16 C -0.149 4.149 17 C -0.137 4.137 18 C -0.125 4.125 19 C 0.067 3.933 20 H 0.087 0.913 21 N -0.353 5.353 22 C -0.378 4.378 23 H 0.090 0.910 24 C -0.203 4.203 25 N -0.575 5.575 26 Si 0.737 3.263 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.207 1.207 30 C -0.055 4.055 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.138 0.862 43 H 0.135 0.865 44 H 0.134 0.866 45 H 0.136 0.864 46 H 0.139 0.861 47 H 0.220 0.780 48 H 0.066 0.934 49 H 0.075 0.925 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.344 8.393 10.185 13.266 hybrid contribution -0.500 -1.260 -0.384 1.409 sum -1.844 7.133 9.801 12.261 Atomic orbital electron populations 1.22309 0.94673 1.04625 1.04650 1.24666 0.91862 0.90471 0.70293 1.90441 1.71977 1.35231 1.35339 1.22198 0.96664 0.97422 1.04917 1.21141 0.91555 0.96040 1.04565 1.21642 0.91558 0.99678 1.04734 1.20292 0.88198 0.83749 0.75715 1.90686 1.80314 1.20949 1.51171 1.48846 1.06582 1.07171 1.72413 1.22385 0.80142 0.99142 0.99048 1.21534 0.91617 0.95818 1.00477 0.89037 1.19589 0.94305 0.97974 0.93394 1.20971 0.96393 0.99744 0.96321 1.21048 0.93558 1.00261 0.99018 1.21058 0.99232 1.01160 0.93418 1.21091 0.96462 0.99538 0.96628 1.21086 0.92919 0.99499 0.99009 1.21174 0.89852 0.91410 0.90816 0.91304 1.42461 1.74625 1.15551 1.02650 1.19210 1.34164 0.91298 0.93138 0.91018 1.24739 1.01778 0.98515 0.95293 1.69658 1.53023 1.37687 0.97176 0.86222 0.78832 0.84359 0.76934 1.21635 1.21749 1.20672 1.23467 1.02811 0.78652 1.00547 0.88703 0.89926 0.89661 0.88276 0.88023 0.90687 0.90853 0.89039 0.88406 0.90153 0.91088 0.86200 0.86466 0.86626 0.86404 0.86053 0.77962 0.93359 0.92526 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.26 10.25 36.01 0.37 -0.89 16 2 C 0.35 3.44 7.27 -29.03 -0.21 3.22 16 3 O -0.46 -6.52 16.72 5.99 0.10 -6.42 16 4 C -0.17 -1.50 5.62 -27.88 -0.16 -1.66 16 5 C -0.10 -1.17 3.79 -26.73 -0.10 -1.27 16 6 C -0.14 -1.69 4.78 -27.88 -0.13 -1.82 16 7 C 0.53 8.60 7.89 -10.98 -0.09 8.51 16 8 O -0.55 -10.75 16.19 5.55 0.09 -10.66 16 9 N -0.62 -9.62 3.29 -170.00 -0.56 -10.18 16 10 C 0.12 1.72 6.45 -2.32 -0.01 1.71 16 11 C -0.07 -1.18 2.97 -90.09 -0.27 -1.44 16 12 H 0.09 1.58 7.55 -51.93 -0.39 1.18 16 13 C -0.05 -0.78 4.93 -104.62 -0.52 -1.30 16 14 C -0.12 -1.58 8.19 -39.58 -0.32 -1.90 16 15 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 16 C -0.13 -1.60 10.05 -39.58 -0.40 -2.00 16 17 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 18 C -0.11 -1.59 9.69 -39.58 -0.38 -1.97 16 19 C 0.18 3.19 3.13 -66.57 -0.21 2.98 16 20 H 0.07 1.25 7.15 -51.93 -0.37 0.87 16 21 N -0.71 -16.18 5.08 -52.10 -0.26 -16.44 16 22 C -0.25 -6.28 9.97 -15.06 -0.15 -6.43 16 23 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 24 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 25 N -0.93 -26.47 13.06 55.49 0.72 -25.75 16 26 Si 0.91 21.14 29.55 -169.99 -5.02 16.12 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 30 C 0.07 1.12 6.55 -2.99 -0.02 1.10 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.35 8.12 -51.93 -0.42 -0.07 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.08 8.06 -51.93 -0.42 0.66 16 37 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.10 1.19 7.91 -51.93 -0.41 0.77 16 40 H 0.08 1.25 7.85 -51.93 -0.41 0.84 16 41 H 0.07 0.95 6.71 -51.93 -0.35 0.60 16 42 H 0.12 1.46 7.25 -52.49 -0.38 1.08 16 43 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 44 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 45 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 46 H 0.12 1.75 7.98 -52.49 -0.42 1.33 16 47 H 0.39 9.55 7.54 -40.82 -0.31 9.24 16 48 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 49 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.09 1.47 7.32 -51.93 -0.38 1.09 16 LS Contribution 413.01 15.07 6.22 6.22 Total: -1.00 -32.74 413.01 -10.23 -42.97 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -8.03 Total: 11.43 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -3.49 Total: -7.30 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.10 Total: -52.37 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: 0.19 Total: -17.08 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.74 -10.23 -42.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211530330.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.235 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds