Wall clock time and date at job start Wed Apr 1 2020 03:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20766 * 119.99895 * 2 1 4 4 C 1.50699 * 119.99898 * 179.97438 * 2 1 3 5 5 C 1.53000 * 109.46760 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.46845 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.46974 * 180.02562 * 6 5 4 8 8 O 1.21284 * 120.00518 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00241 * 180.02562 * 7 6 5 10 10 C 1.48112 * 127.03853 * 179.70573 * 9 7 6 11 11 C 1.54589 * 103.42379 * 219.28428 * 10 9 7 12 12 H 1.08998 * 110.58009 * 81.17045 * 11 10 9 13 13 C 1.50698 * 110.83534 * 204.44476 * 11 10 9 14 14 C 1.38234 * 119.99798 * 53.28650 * 13 11 10 15 15 C 1.38241 * 119.99712 * 179.81333 * 14 13 11 16 16 C 1.38231 * 120.00121 * 0.41526 * 15 14 13 17 17 C 1.38236 * 120.00172 * 359.82176 * 16 15 14 18 18 C 1.38235 * 119.99695 * 359.97438 * 17 16 15 19 19 C 1.54617 * 102.91178 * 322.86582 * 11 10 9 20 20 H 1.09000 * 110.32728 * 262.80496 * 19 11 10 21 21 N 1.46500 * 110.32605 * 140.59179 * 19 11 10 22 22 C 1.36940 * 120.00239 * 157.92495 * 21 19 11 23 23 H 1.08002 * 119.99726 * 359.97438 * 22 21 19 24 24 C 1.38809 * 120.00222 * 179.97438 * 22 21 19 25 25 N 1.31615 * 120.00106 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00090 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47132 * 89.99866 * 26 24 22 28 28 H 1.48498 * 109.47688 * 210.00347 * 26 24 22 29 29 H 1.48503 * 109.47266 * 330.00314 * 26 24 22 30 30 C 1.47489 * 127.03006 * 0.02562 * 9 7 6 31 31 H 1.09002 * 109.47152 * 90.00252 * 1 2 3 32 32 H 1.09001 * 109.46980 * 330.00352 * 1 2 3 33 33 H 1.09004 * 109.47113 * 210.00333 * 1 2 3 34 34 H 1.09000 * 109.47058 * 299.99766 * 4 2 1 35 35 H 1.08999 * 109.47356 * 60.00265 * 4 2 1 36 36 H 1.09000 * 109.46950 * 299.99595 * 5 4 2 37 37 H 1.08996 * 109.47878 * 60.00082 * 5 4 2 38 38 H 1.09000 * 109.46864 * 299.99462 * 6 5 4 39 39 H 1.08999 * 109.47464 * 59.99908 * 6 5 4 40 40 H 1.09002 * 110.65742 * 337.76825 * 10 9 7 41 41 H 1.09002 * 110.66253 * 100.88201 * 10 9 7 42 42 H 1.07998 * 120.00413 * 359.97438 * 14 13 11 43 43 H 1.08002 * 119.99450 * 180.21231 * 15 14 13 44 44 H 1.08006 * 119.99773 * 179.79073 * 16 15 14 45 45 H 1.07996 * 119.99921 * 179.97438 * 17 16 15 46 46 H 1.08001 * 119.99572 * 179.97438 * 18 17 16 47 47 H 0.97002 * 120.00175 * 337.92618 * 21 19 11 48 48 H 0.97006 * 119.99980 * 179.97438 * 25 24 22 49 49 H 1.08990 * 109.91241 * 273.88388 * 30 9 7 50 50 H 1.08998 * 109.91167 * 34.97074 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7647 -1.0255 0.0011 6 6 4.5298 -2.3505 0.0011 7 6 6.0114 -2.0751 0.0022 8 8 6.4157 -0.9317 0.0025 9 7 6.8873 -3.0995 0.0018 10 6 8.3656 -3.0092 -0.0033 11 6 8.7916 -4.1514 -0.9539 12 1 8.7053 -3.8366 -1.9939 13 6 10.1947 -4.6082 -0.6479 14 6 10.5353 -4.9799 0.6392 15 6 11.8214 -5.4027 0.9191 16 6 12.7691 -5.4455 -0.0863 17 6 12.4298 -5.0691 -1.3725 18 6 11.1427 -4.6504 -1.6532 19 6 7.7704 -5.2670 -0.6330 20 1 8.1971 -5.9792 0.0733 21 7 7.3608 -5.9510 -1.8621 22 6 6.8429 -7.2172 -1.8012 23 1 6.7368 -7.7118 -0.8469 24 6 6.4544 -7.8650 -2.9657 25 7 6.5842 -7.2624 -4.1286 26 14 5.7486 -9.5925 -2.8826 27 1 4.2736 -9.5176 -2.7271 28 1 6.0781 -10.3227 -4.1329 29 1 6.3328 -10.3106 -1.7214 30 6 6.5696 -4.5398 -0.0002 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 0.8900 0.5138 33 1 -0.3633 -0.8900 0.5139 34 1 1.9972 -1.8762 0.8908 35 1 1.9972 -1.8771 -0.8891 36 1 4.0284 -0.4541 -0.8890 37 1 4.0278 -0.4537 0.8910 38 1 4.2662 -2.9222 0.8909 39 1 4.2667 -2.9220 -0.8891 40 1 8.6906 -2.0444 -0.3926 41 1 8.7646 -3.1755 0.9974 42 1 9.7961 -4.9426 1.4256 43 1 12.0865 -5.6963 1.9240 44 1 13.7748 -5.7726 0.1331 45 1 13.1703 -5.1022 -2.1579 46 1 10.8777 -4.3560 -2.6580 47 1 7.4565 -5.5069 -2.7192 48 1 6.3130 -7.7153 -4.9425 49 1 6.4209 -4.8885 1.0217 50 1 5.6702 -4.7207 -0.5886 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211530330.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:49 Heat of formation + Delta-G solvation = -62.747710 kcal Electronic energy + Delta-G solvation = -29652.436436 eV Core-core repulsion = 25643.606101 eV Total energy + Delta-G solvation = -4008.830335 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.40474 -40.51132 -40.03300 -38.53504 -35.80694 -35.29097 -33.89428 -32.65410 -31.74689 -31.65694 -30.02045 -28.99271 -28.35421 -25.95317 -24.85828 -23.56621 -22.96370 -22.51104 -21.07487 -20.55143 -20.03739 -19.11998 -18.13776 -17.89823 -17.17413 -16.98700 -16.81265 -16.43457 -16.20929 -15.95628 -15.86693 -15.56756 -15.40819 -15.19462 -14.84595 -14.46746 -14.41634 -14.10411 -13.83211 -13.62847 -13.43080 -13.33026 -13.20833 -13.06443 -12.87789 -12.77106 -12.74815 -12.66736 -12.52254 -12.35712 -12.17908 -11.96133 -11.82273 -11.75501 -11.73743 -11.59277 -11.06175 -10.91308 -10.53249 -9.81121 -9.71302 -9.53999 -8.94269 -7.90125 -5.19669 0.50777 0.57641 1.06253 1.52121 1.53472 1.60432 1.61112 1.97225 2.59469 2.91247 3.17230 3.40665 3.50606 3.64798 3.78376 3.87423 4.01768 4.07812 4.09350 4.13022 4.17641 4.21682 4.31011 4.35905 4.40779 4.45715 4.53625 4.60095 4.61707 4.67639 4.71204 4.73586 4.78549 4.81578 4.86737 4.94651 5.01294 5.09213 5.14207 5.19192 5.24353 5.25062 5.32887 5.40786 5.57969 5.65107 5.68260 5.79665 6.19507 6.29407 6.55486 6.63590 7.12788 7.37248 8.08407 8.32620 9.32909 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007544 B = 0.003143 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3710.833133 B = 8905.373160 C =11974.508457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.351 3.649 3 O -0.515 6.515 4 C -0.170 4.170 5 C -0.091 4.091 6 C -0.127 4.127 7 C 0.522 3.478 8 O -0.593 6.593 9 N -0.616 5.616 10 C 0.119 3.881 11 C -0.062 4.062 12 H 0.066 0.934 13 C -0.072 4.072 14 C -0.123 4.123 15 C -0.121 4.121 16 C -0.130 4.130 17 C -0.127 4.127 18 C -0.133 4.133 19 C 0.177 3.823 20 H 0.074 0.926 21 N -0.724 5.724 22 C -0.235 4.235 23 H 0.083 0.917 24 C -0.069 4.069 25 N -0.969 5.969 26 Si 0.966 3.034 27 H -0.285 1.285 28 H -0.304 1.304 29 H -0.269 1.269 30 C 0.083 3.917 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.133 0.867 35 H 0.123 0.877 36 H 0.041 0.959 37 H 0.052 0.948 38 H 0.123 0.877 39 H 0.104 0.896 40 H 0.067 0.933 41 H 0.094 0.906 42 H 0.135 0.865 43 H 0.147 0.853 44 H 0.145 0.855 45 H 0.135 0.865 46 H 0.110 0.890 47 H 0.371 0.629 48 H 0.249 0.751 49 H 0.088 0.912 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.346 5.480 12.857 14.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.230 3.770 3 O -0.392 6.392 4 C -0.207 4.207 5 C -0.129 4.129 6 C -0.167 4.167 7 C 0.313 3.687 8 O -0.474 6.474 9 N -0.349 5.349 10 C -0.003 4.003 11 C -0.082 4.082 12 H 0.084 0.916 13 C -0.072 4.072 14 C -0.141 4.141 15 C -0.139 4.139 16 C -0.148 4.148 17 C -0.145 4.145 18 C -0.151 4.151 19 C 0.067 3.933 20 H 0.092 0.908 21 N -0.363 5.363 22 C -0.366 4.366 23 H 0.101 0.899 24 C -0.262 4.262 25 N -0.619 5.619 26 Si 0.796 3.204 27 H -0.212 1.212 28 H -0.232 1.232 29 H -0.194 1.194 30 C -0.042 4.042 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.133 0.867 34 H 0.151 0.849 35 H 0.141 0.859 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.141 0.859 39 H 0.123 0.877 40 H 0.086 0.914 41 H 0.112 0.888 42 H 0.153 0.847 43 H 0.165 0.835 44 H 0.163 0.837 45 H 0.153 0.847 46 H 0.128 0.872 47 H 0.203 0.797 48 H 0.057 0.943 49 H 0.106 0.894 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.960 6.501 12.937 14.611 hybrid contribution -0.182 -0.642 -1.170 1.347 sum -2.142 5.859 11.767 13.318 Atomic orbital electron populations 1.22316 0.91476 1.05960 1.05837 1.25336 0.93723 0.89928 0.67973 1.90438 1.73359 1.37088 1.38355 1.22255 0.93473 0.97505 1.07448 1.21039 0.94516 0.95367 1.01995 1.21678 0.88598 0.99984 1.06397 1.21041 0.89780 0.83136 0.74751 1.90669 1.81193 1.22529 1.53022 1.48920 1.06854 1.07160 1.71955 1.22404 0.80015 0.98098 0.99828 1.21320 0.92217 0.95396 0.99273 0.91557 1.19599 0.93680 0.99483 0.94475 1.21185 0.97565 0.99585 0.95777 1.21445 0.92879 0.99047 1.00495 1.21458 1.00668 0.99928 0.92764 1.21363 0.96015 0.99141 0.97974 1.21201 0.94191 1.00942 0.98775 1.21351 0.91021 0.91863 0.89098 0.90843 1.42612 1.74805 1.15221 1.03679 1.19606 1.31827 0.91949 0.93237 0.89888 1.25463 1.03521 1.01989 0.95201 1.69821 1.55398 1.39089 0.97609 0.85250 0.78244 0.80444 0.76473 1.21186 1.23156 1.19375 1.23222 1.00956 0.78284 1.01777 0.87370 0.90213 0.86710 0.84917 0.85931 0.93996 0.92892 0.85892 0.87748 0.91410 0.88844 0.84713 0.83498 0.83721 0.84715 0.87213 0.79672 0.94258 0.89440 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.98 10.25 71.24 0.73 -1.25 16 2 C 0.35 6.54 7.27 29.10 0.21 6.76 16 3 O -0.51 -15.28 16.72 -1.47 -0.02 -15.30 16 4 C -0.17 -2.57 5.62 29.85 0.17 -2.40 16 5 C -0.09 -2.24 3.79 30.60 0.12 -2.12 16 6 C -0.13 -2.99 4.78 29.85 0.14 -2.85 16 7 C 0.52 16.87 7.89 87.66 0.69 17.56 16 8 O -0.59 -23.83 16.19 -3.04 -0.05 -23.88 16 9 N -0.62 -18.79 3.29 -810.13 -2.67 -21.46 16 10 C 0.12 3.52 6.45 86.61 0.56 4.08 16 11 C -0.06 -1.99 2.97 -10.45 -0.03 -2.02 16 12 H 0.07 2.44 7.55 -2.39 -0.02 2.42 16 13 C -0.07 -2.15 4.93 -19.87 -0.10 -2.25 16 14 C -0.12 -3.10 8.19 22.27 0.18 -2.92 16 15 C -0.12 -2.64 10.05 22.27 0.22 -2.41 16 16 C -0.13 -2.86 10.05 22.27 0.22 -2.64 16 17 C -0.13 -3.22 10.05 22.27 0.22 -3.00 16 18 C -0.13 -4.02 9.69 22.27 0.22 -3.81 16 19 C 0.18 6.14 3.13 45.88 0.14 6.28 16 20 H 0.07 2.52 7.15 -2.39 -0.02 2.50 16 21 N -0.72 -33.06 5.08 -318.76 -1.62 -34.67 16 22 C -0.23 -11.76 9.97 84.03 0.84 -10.92 16 23 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 24 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 25 N -0.97 -56.54 13.06 21.65 0.28 -56.25 16 26 Si 0.97 43.28 29.55 68.60 2.03 45.30 16 27 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 28 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 29 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 30 C 0.08 2.46 6.55 86.52 0.57 3.02 16 31 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.11 0.48 8.12 -2.38 -0.02 0.46 16 34 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.04 1.28 8.06 -2.39 -0.02 1.26 16 37 H 0.05 1.50 8.06 -2.39 -0.02 1.48 16 38 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.10 2.37 7.91 -2.39 -0.02 2.35 16 40 H 0.07 2.18 7.85 -2.39 -0.02 2.16 16 41 H 0.09 2.35 6.71 -2.39 -0.02 2.34 16 42 H 0.14 2.89 7.25 -2.91 -0.02 2.87 16 43 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 44 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 45 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 46 H 0.11 3.42 7.98 -2.91 -0.02 3.40 16 47 H 0.37 19.01 7.54 -92.71 -0.70 18.31 16 48 H 0.25 14.26 8.31 -92.70 -0.77 13.49 16 49 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 50 H 0.08 2.47 7.32 -2.39 -0.02 2.45 16 Total: -1.00 -74.76 413.01 3.76 -71.01 By element: Atomic # 1 Polarization: 39.16 SS G_CDS: 0.23 Total: 39.40 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 5.57 Total: -4.13 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -4.00 Total: -112.39 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.07 Total: -39.18 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -74.76 3.76 -71.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211530330.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.258 kcal (2) G-P(sol) polarization free energy of solvation -74.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds