Wall clock time and date at job start Wed Apr 1 2020 03:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42896 * 109.47194 * 2 1 4 4 C 1.42895 * 114.00229 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46826 * 30.00136 * 4 3 2 6 6 C 1.50693 * 109.47403 * 270.00076 * 4 3 2 7 7 O 1.21283 * 120.00094 * 354.99154 * 6 4 3 8 8 N 1.34775 * 120.00243 * 175.00007 * 6 4 3 9 9 C 1.47294 * 136.54516 * 359.62321 * 8 6 4 10 10 C 1.54354 * 87.50701 * 151.47485 * 9 8 6 11 11 H 1.09000 * 115.78656 * 141.80632 * 10 9 8 12 12 C 1.53062 * 111.57616 * 274.17139 * 10 9 8 13 13 C 1.53143 * 109.21476 * 142.37694 * 12 10 9 14 14 N 1.46545 * 108.25613 * 301.59323 * 13 12 10 15 15 C 1.36933 * 119.73832 * 236.39985 * 14 13 12 16 16 H 1.08006 * 120.00149 * 25.18336 * 15 14 13 17 17 C 1.38814 * 119.99804 * 205.18514 * 15 14 13 18 18 N 1.31613 * 120.00019 * 14.49404 * 17 15 14 19 19 Si 1.86796 * 119.99835 * 194.49913 * 17 15 14 20 20 H 1.48501 * 109.47331 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47180 * 119.99931 * 19 17 15 22 22 H 1.48500 * 109.47093 * 239.99663 * 19 17 15 23 23 C 1.45696 * 120.52013 * 56.41557 * 14 13 12 24 24 C 1.46465 * 136.54535 * 179.97438 * 8 6 4 25 25 H 1.09002 * 111.43942 * 97.06191 * 24 8 6 26 26 C 1.50705 * 109.47555 * 149.99562 * 4 3 2 27 27 C 1.38237 * 119.99506 * 39.72737 * 26 4 3 28 28 C 1.38234 * 119.99821 * 179.81510 * 27 26 4 29 29 C 1.38236 * 119.99965 * 0.41601 * 28 27 26 30 30 C 1.38236 * 120.00052 * 359.81819 * 29 28 27 31 31 C 1.38227 * 120.00481 * 220.00563 * 26 4 3 32 32 H 1.08994 * 109.47012 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46699 * 300.00191 * 1 2 3 34 34 H 1.09000 * 109.47221 * 60.00162 * 1 2 3 35 35 H 1.08997 * 109.47053 * 239.99506 * 2 1 3 36 36 H 1.09000 * 109.46523 * 119.99572 * 2 1 3 37 37 H 1.08996 * 113.52823 * 266.10473 * 9 8 6 38 38 H 1.09002 * 113.52474 * 36.73400 * 9 8 6 39 39 H 1.08999 * 109.51214 * 22.45567 * 12 10 9 40 40 H 1.09000 * 109.51308 * 262.30125 * 12 10 9 41 41 H 1.09000 * 109.71053 * 181.90476 * 13 12 10 42 42 H 1.09006 * 109.74204 * 61.30293 * 13 12 10 43 43 H 0.97000 * 120.00000 * 179.97438 * 18 17 15 44 44 H 1.09003 * 108.79111 * 199.11359 * 23 14 13 45 45 H 1.09000 * 108.78866 * 80.89955 * 23 14 13 46 46 H 1.08007 * 120.00030 * 0.02562 * 27 26 4 47 47 H 1.07998 * 119.99973 * 180.21116 * 28 27 26 48 48 H 1.07996 * 119.99656 * 179.79765 * 29 28 27 49 49 H 1.07995 * 120.00093 * 179.97438 * 30 29 28 50 50 H 1.08003 * 120.00283 * 359.97438 * 31 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8635 0.6015 -0.5130 6 6 3.9311 1.5000 1.4215 7 8 3.1416 1.5296 2.3417 8 7 5.2557 1.5029 1.6698 9 6 6.4933 1.4690 0.8717 10 6 7.1749 2.2438 2.0196 11 1 8.2026 1.9560 2.2412 12 6 6.9723 3.7542 1.8772 13 6 6.7685 4.3684 3.2652 14 7 5.6061 3.7264 3.8852 15 6 4.5563 4.4927 4.3161 16 1 4.3730 5.4584 3.8684 17 6 3.7276 4.0284 5.3283 18 7 4.1005 3.0044 6.0663 19 14 2.0833 4.8569 5.6430 20 1 1.9013 5.9761 4.6841 21 1 0.9891 3.8690 5.4648 22 1 2.0525 5.3847 7.0307 23 6 5.5589 2.2792 4.0469 24 6 6.1152 1.5352 2.8554 25 1 6.4466 0.5350 3.1345 26 6 3.8349 2.7262 -0.7099 27 6 3.1033 3.8848 -0.5271 28 6 3.4761 5.0472 -1.1758 29 6 4.5753 5.0489 -2.0141 30 6 5.3039 3.8891 -2.2007 31 6 4.9334 2.7277 -1.5489 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 6.8912 0.4644 0.7285 38 1 6.4271 2.0342 -0.0579 39 1 6.0941 3.9473 1.2611 40 1 7.8513 4.1969 1.4087 41 1 6.5897 5.4395 3.1706 42 1 7.6536 4.1962 3.8777 43 1 3.5216 2.6802 6.7739 44 1 4.5226 1.9764 4.1974 45 1 6.1341 2.0059 4.9315 46 1 2.2425 3.8827 0.1252 47 1 2.9066 5.9532 -1.0303 48 1 4.8645 5.9562 -2.5234 49 1 6.1625 3.8902 -2.8558 50 1 5.5026 1.8215 -1.6949 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222071552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:56 Heat of formation + Delta-G solvation = 24.078083 kcal Electronic energy + Delta-G solvation = -32811.463773 eV Core-core repulsion = 28806.398486 eV Total energy + Delta-G solvation = -4005.065287 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.71247 -39.34843 -38.15566 -36.67402 -35.15124 -32.71506 -32.03192 -30.93592 -30.50636 -30.05445 -29.07752 -27.01668 -26.11201 -23.80755 -23.19666 -22.71213 -22.30682 -21.62363 -20.97433 -19.73684 -17.86040 -17.30036 -16.96079 -16.70890 -16.00455 -15.67547 -15.41954 -15.21371 -14.85761 -14.43389 -14.24541 -13.93212 -13.64912 -13.38443 -13.30637 -13.15658 -13.10134 -12.67872 -12.58463 -12.40995 -12.31208 -12.15520 -11.89537 -11.70715 -11.41067 -11.28083 -11.01520 -10.98410 -10.81364 -10.61952 -10.58854 -10.40486 -10.15036 -10.10139 -9.78889 -9.71653 -9.43095 -8.99041 -8.78666 -8.46237 -8.19184 -8.04370 -6.52462 -5.59432 -3.00543 1.34500 1.50895 3.08989 3.23308 3.51669 3.59859 3.60979 3.66957 4.00141 4.65759 4.72466 4.73297 4.75944 4.87285 5.02345 5.06738 5.10342 5.20098 5.24554 5.35506 5.40337 5.47683 5.53851 5.57702 5.59772 5.63950 5.68191 5.72525 5.77276 5.95140 5.96062 5.98166 6.12562 6.13642 6.17720 6.19069 6.37440 6.47274 6.47582 6.56803 6.61797 6.62938 6.64944 6.84717 7.05136 7.07656 7.17409 7.55431 7.83715 8.00376 8.37493 8.63930 8.80411 9.42291 10.06811 10.54100 11.48889 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008580 B = 0.005638 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3262.773481 B = 4964.851547 C = 5881.390821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.057 3.943 3 O -0.351 6.351 4 C 0.124 3.876 5 H 0.082 0.918 6 C 0.522 3.478 7 O -0.497 6.497 8 N -0.626 5.626 9 C 0.083 3.917 10 C -0.112 4.112 11 H 0.090 0.910 12 C -0.114 4.114 13 C 0.149 3.851 14 N -0.582 5.582 15 C -0.247 4.247 16 H 0.061 0.939 17 C 0.011 3.989 18 N -0.905 5.905 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.289 1.289 22 H -0.293 1.293 23 C 0.168 3.832 24 C 0.118 3.882 25 H 0.070 0.930 26 C -0.079 4.079 27 C -0.075 4.075 28 C -0.118 4.118 29 C -0.115 4.115 30 C -0.123 4.123 31 C -0.110 4.110 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.018 0.982 43 H 0.250 0.750 44 H 0.103 0.897 45 H 0.028 0.972 46 H 0.129 0.871 47 H 0.122 0.878 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.180 -4.805 -18.715 19.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.268 6.268 4 C 0.063 3.937 5 H 0.100 0.900 6 C 0.309 3.691 7 O -0.370 6.370 8 N -0.365 5.365 9 C -0.040 4.040 10 C -0.131 4.131 11 H 0.108 0.892 12 C -0.153 4.153 13 C 0.022 3.978 14 N -0.305 5.305 15 C -0.376 4.376 16 H 0.079 0.921 17 C -0.187 4.187 18 N -0.550 5.550 19 Si 0.730 3.270 20 H -0.205 1.205 21 H -0.215 1.215 22 H -0.220 1.220 23 C 0.041 3.959 24 C 0.014 3.986 25 H 0.088 0.912 26 C -0.080 4.080 27 C -0.093 4.093 28 C -0.136 4.136 29 C -0.133 4.133 30 C -0.141 4.141 31 C -0.128 4.128 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.036 0.964 43 H 0.060 0.940 44 H 0.121 0.879 45 H 0.046 0.954 46 H 0.147 0.853 47 H 0.140 0.860 48 H 0.138 0.862 49 H 0.140 0.860 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.218 -4.714 -18.104 18.982 hybrid contribution -0.638 -0.073 0.199 0.672 sum 2.580 -4.787 -17.905 18.712 Atomic orbital electron populations 1.21698 0.93449 1.02054 1.03311 1.22557 0.95991 0.83583 0.99869 1.88001 1.17771 1.26617 1.94457 1.20630 0.83489 0.96632 0.92973 0.89993 1.20307 0.80400 0.77576 0.90833 1.90805 1.53362 1.47508 1.45313 1.49422 1.02759 1.73007 1.11268 1.23584 0.83749 0.99614 0.97049 1.22779 0.97821 0.96595 0.95916 0.89228 1.21814 1.00370 0.92643 1.00498 1.20710 0.90415 0.95861 0.90768 1.43425 1.16076 1.01172 1.69807 1.19104 1.04477 1.01187 1.12873 0.92095 1.24887 0.99474 0.98456 0.95917 1.70013 1.36099 1.27929 1.20962 0.86270 0.84981 0.78690 0.77082 1.20502 1.21529 1.22040 1.20171 1.03083 0.82884 0.89721 1.22665 0.87023 0.98485 0.90383 0.91227 1.19322 0.96725 0.93980 0.97924 1.21065 0.99126 0.91672 0.97466 1.21169 0.97379 0.98024 0.97076 1.21142 0.95582 0.98022 0.98541 1.20974 1.00032 0.92813 1.00328 1.20852 0.96443 0.98659 0.96803 0.91214 0.91373 0.92023 0.93658 0.92928 0.90743 0.90274 0.91859 0.92918 0.92754 0.96437 0.93969 0.87891 0.95424 0.85337 0.85966 0.86219 0.86030 0.86127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 10.28 37.16 0.38 -1.38 16 2 C 0.06 0.78 6.46 37.16 0.24 1.02 16 3 O -0.35 -5.98 8.84 -55.09 -0.49 -6.46 16 4 C 0.12 2.01 2.59 -29.04 -0.08 1.93 16 5 H 0.08 1.08 7.65 -51.92 -0.40 0.68 16 6 C 0.52 10.63 7.30 -10.99 -0.08 10.55 16 7 O -0.50 -12.83 15.75 -14.30 -0.23 -13.05 16 8 N -0.63 -11.49 3.29 -187.54 -0.62 -12.11 16 9 C 0.08 1.12 7.56 -11.40 -0.09 1.04 16 10 C -0.11 -1.74 4.57 -90.17 -0.41 -2.15 16 11 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 12 C -0.11 -1.95 5.71 -26.63 -0.15 -2.11 16 13 C 0.15 3.16 6.46 -3.94 -0.03 3.14 16 14 N -0.58 -15.15 3.03 -174.90 -0.53 -15.68 16 15 C -0.25 -7.21 9.53 -15.06 -0.14 -7.36 16 16 H 0.06 1.78 7.83 -52.48 -0.41 1.37 16 17 C 0.01 0.33 4.94 -17.43 -0.09 0.24 16 18 N -0.90 -28.02 10.94 55.49 0.61 -27.41 16 19 Si 0.90 24.00 29.58 -169.99 -5.03 18.97 16 20 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16 22 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 23 C 0.17 4.25 4.59 -5.44 -0.02 4.22 16 24 C 0.12 2.30 4.02 -77.70 -0.31 1.99 16 25 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 26 C -0.08 -1.20 4.75 -104.62 -0.50 -1.70 16 27 C -0.08 -1.23 9.35 -39.58 -0.37 -1.60 16 28 C -0.12 -1.64 10.05 -39.58 -0.40 -2.03 16 29 C -0.11 -1.35 10.05 -39.58 -0.40 -1.75 16 30 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 31 C -0.11 -1.33 7.41 -39.59 -0.29 -1.62 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.50 8.09 -51.93 -0.42 0.08 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.96 4.53 -51.93 -0.24 0.73 16 39 H 0.06 1.22 7.69 -51.93 -0.40 0.82 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 1.15 7.87 -51.93 -0.41 0.74 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.10 3.08 4.96 -51.93 -0.26 2.82 16 45 H 0.03 0.76 7.99 -51.93 -0.42 0.34 16 46 H 0.13 2.35 7.77 -52.48 -0.41 1.95 16 47 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 48 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 49 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 50 H 0.12 1.17 7.21 -52.48 -0.38 0.79 16 LS Contribution 395.76 15.07 5.96 5.96 Total: -1.00 -35.98 395.76 -11.39 -47.36 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.94 Total: 1.74 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -3.13 Total: 0.68 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.54 Total: -55.20 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.71 Total: -19.52 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: -5.03 Total: 18.97 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.98 -11.39 -47.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222071552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.439 kcal (2) G-P(sol) polarization free energy of solvation -35.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds