Wall clock time and date at job start Wed Apr 1 2020 03:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42896 * 109.47194 * 2 1 4 4 C 1.42895 * 114.00229 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46826 * 30.00136 * 4 3 2 6 6 C 1.50693 * 109.47403 * 270.00076 * 4 3 2 7 7 O 1.21283 * 120.00094 * 354.99154 * 6 4 3 8 8 N 1.34775 * 120.00243 * 175.00007 * 6 4 3 9 9 C 1.47294 * 136.54516 * 359.62321 * 8 6 4 10 10 C 1.54354 * 87.50701 * 151.47485 * 9 8 6 11 11 H 1.09000 * 115.78656 * 141.80632 * 10 9 8 12 12 C 1.53062 * 111.57616 * 274.17139 * 10 9 8 13 13 C 1.53143 * 109.21476 * 142.37694 * 12 10 9 14 14 N 1.46545 * 108.25613 * 301.59323 * 13 12 10 15 15 C 1.36933 * 119.73832 * 236.39985 * 14 13 12 16 16 H 1.08006 * 120.00149 * 25.18336 * 15 14 13 17 17 C 1.38814 * 119.99804 * 205.18514 * 15 14 13 18 18 N 1.31613 * 120.00019 * 14.49404 * 17 15 14 19 19 Si 1.86796 * 119.99835 * 194.49913 * 17 15 14 20 20 H 1.48501 * 109.47331 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47180 * 119.99931 * 19 17 15 22 22 H 1.48500 * 109.47093 * 239.99663 * 19 17 15 23 23 C 1.45696 * 120.52013 * 56.41557 * 14 13 12 24 24 C 1.46465 * 136.54535 * 179.97438 * 8 6 4 25 25 H 1.09002 * 111.43942 * 97.06191 * 24 8 6 26 26 C 1.50705 * 109.47555 * 149.99562 * 4 3 2 27 27 C 1.38237 * 119.99506 * 39.72737 * 26 4 3 28 28 C 1.38234 * 119.99821 * 179.81510 * 27 26 4 29 29 C 1.38236 * 119.99965 * 0.41601 * 28 27 26 30 30 C 1.38236 * 120.00052 * 359.81819 * 29 28 27 31 31 C 1.38227 * 120.00481 * 220.00563 * 26 4 3 32 32 H 1.08994 * 109.47012 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46699 * 300.00191 * 1 2 3 34 34 H 1.09000 * 109.47221 * 60.00162 * 1 2 3 35 35 H 1.08997 * 109.47053 * 239.99506 * 2 1 3 36 36 H 1.09000 * 109.46523 * 119.99572 * 2 1 3 37 37 H 1.08996 * 113.52823 * 266.10473 * 9 8 6 38 38 H 1.09002 * 113.52474 * 36.73400 * 9 8 6 39 39 H 1.08999 * 109.51214 * 22.45567 * 12 10 9 40 40 H 1.09000 * 109.51308 * 262.30125 * 12 10 9 41 41 H 1.09000 * 109.71053 * 181.90476 * 13 12 10 42 42 H 1.09006 * 109.74204 * 61.30293 * 13 12 10 43 43 H 0.97000 * 120.00000 * 179.97438 * 18 17 15 44 44 H 1.09003 * 108.79111 * 199.11359 * 23 14 13 45 45 H 1.09000 * 108.78866 * 80.89955 * 23 14 13 46 46 H 1.08007 * 120.00030 * 0.02562 * 27 26 4 47 47 H 1.07998 * 119.99973 * 180.21116 * 28 27 26 48 48 H 1.07996 * 119.99656 * 179.79765 * 29 28 27 49 49 H 1.07995 * 120.00093 * 179.97438 * 30 29 28 50 50 H 1.08003 * 120.00283 * 359.97438 * 31 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8635 0.6015 -0.5130 6 6 3.9311 1.5000 1.4215 7 8 3.1416 1.5296 2.3417 8 7 5.2557 1.5029 1.6698 9 6 6.4933 1.4690 0.8717 10 6 7.1749 2.2438 2.0196 11 1 8.2026 1.9560 2.2412 12 6 6.9723 3.7542 1.8772 13 6 6.7685 4.3684 3.2652 14 7 5.6061 3.7264 3.8852 15 6 4.5563 4.4927 4.3161 16 1 4.3730 5.4584 3.8684 17 6 3.7276 4.0284 5.3283 18 7 4.1005 3.0044 6.0663 19 14 2.0833 4.8569 5.6430 20 1 1.9013 5.9761 4.6841 21 1 0.9891 3.8690 5.4648 22 1 2.0525 5.3847 7.0307 23 6 5.5589 2.2792 4.0469 24 6 6.1152 1.5352 2.8554 25 1 6.4466 0.5350 3.1345 26 6 3.8349 2.7262 -0.7099 27 6 3.1033 3.8848 -0.5271 28 6 3.4761 5.0472 -1.1758 29 6 4.5753 5.0489 -2.0141 30 6 5.3039 3.8891 -2.2007 31 6 4.9334 2.7277 -1.5489 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 6.8912 0.4644 0.7285 38 1 6.4271 2.0342 -0.0579 39 1 6.0941 3.9473 1.2611 40 1 7.8513 4.1969 1.4087 41 1 6.5897 5.4395 3.1706 42 1 7.6536 4.1962 3.8777 43 1 3.5216 2.6802 6.7739 44 1 4.5226 1.9764 4.1974 45 1 6.1341 2.0059 4.9315 46 1 2.2425 3.8827 0.1252 47 1 2.9066 5.9532 -1.0303 48 1 4.8645 5.9562 -2.5234 49 1 6.1625 3.8902 -2.8558 50 1 5.5026 1.8215 -1.6949 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222071552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:55 Heat of formation + Delta-G solvation = 1.072084 kcal Electronic energy + Delta-G solvation = -32812.461388 eV Core-core repulsion = 28806.398486 eV Total energy + Delta-G solvation = -4006.062901 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.08800 -40.54036 -39.36241 -38.12334 -37.05162 -34.09629 -33.67222 -31.94839 -31.90809 -31.52250 -30.60384 -28.73630 -27.36219 -25.68171 -24.54472 -23.97090 -23.35948 -22.74922 -22.54090 -21.15650 -19.54161 -18.82911 -18.11566 -17.92994 -17.64799 -17.22447 -16.76244 -16.55901 -16.12377 -16.00352 -15.61809 -15.46813 -15.17337 -14.78299 -14.76821 -14.54713 -14.39378 -14.15430 -14.04701 -13.59709 -13.54599 -13.40458 -13.18883 -13.16149 -12.92537 -12.77903 -12.72045 -12.41368 -12.24862 -12.19476 -12.02603 -11.98084 -11.85209 -11.74711 -11.49201 -11.37989 -10.97174 -10.61810 -10.25923 -9.79240 -9.57814 -9.47341 -8.67872 -7.87799 -5.29859 0.34804 0.52048 1.28238 1.36246 1.40892 1.70172 1.87349 2.44305 2.58165 2.94565 3.27938 3.44294 3.53330 3.62307 3.72412 3.80296 3.98979 4.05784 4.11360 4.16851 4.23812 4.27334 4.31676 4.36592 4.48024 4.53668 4.58810 4.62733 4.66455 4.70354 4.76236 4.76820 4.85845 4.93676 4.95072 5.02547 5.06696 5.12652 5.14467 5.16304 5.33251 5.43345 5.53748 5.54276 5.59487 5.64095 5.72069 5.82198 6.05343 6.12518 6.38004 6.97370 7.17723 7.32945 7.95949 8.33102 9.16351 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008580 B = 0.005638 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3262.773481 B = 4964.851547 C = 5881.390821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 O -0.380 6.380 4 C 0.133 3.867 5 H 0.121 0.879 6 C 0.510 3.490 7 O -0.575 6.575 8 N -0.631 5.631 9 C 0.099 3.901 10 C -0.100 4.100 11 H 0.132 0.868 12 C -0.101 4.101 13 C 0.140 3.860 14 N -0.598 5.598 15 C -0.247 4.247 16 H 0.055 0.945 17 C -0.044 4.044 18 N -0.932 5.932 19 Si 0.948 3.052 20 H -0.270 1.270 21 H -0.307 1.307 22 H -0.280 1.280 23 C 0.181 3.819 24 C 0.102 3.898 25 H 0.091 0.909 26 C -0.095 4.095 27 C -0.112 4.112 28 C -0.134 4.134 29 C -0.111 4.111 30 C -0.111 4.111 31 C -0.103 4.103 32 H 0.098 0.902 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.030 0.970 37 H 0.120 0.880 38 H 0.102 0.898 39 H 0.040 0.960 40 H 0.099 0.901 41 H 0.046 0.954 42 H 0.027 0.973 43 H 0.243 0.757 44 H 0.048 0.952 45 H -0.007 1.007 46 H 0.083 0.917 47 H 0.123 0.877 48 H 0.150 0.850 49 H 0.165 0.835 50 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.031 -5.324 -23.440 25.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 O -0.298 6.298 4 C 0.071 3.929 5 H 0.138 0.862 6 C 0.300 3.700 7 O -0.454 6.454 8 N -0.368 5.368 9 C -0.022 4.022 10 C -0.119 4.119 11 H 0.150 0.850 12 C -0.140 4.140 13 C 0.015 3.985 14 N -0.322 5.322 15 C -0.378 4.378 16 H 0.072 0.928 17 C -0.239 4.239 18 N -0.579 5.579 19 Si 0.778 3.222 20 H -0.194 1.194 21 H -0.235 1.235 22 H -0.207 1.207 23 C 0.054 3.946 24 C -0.003 4.003 25 H 0.109 0.891 26 C -0.096 4.096 27 C -0.131 4.131 28 C -0.152 4.152 29 C -0.129 4.129 30 C -0.128 4.128 31 C -0.121 4.121 32 H 0.117 0.883 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.049 0.951 37 H 0.138 0.862 38 H 0.120 0.880 39 H 0.058 0.942 40 H 0.118 0.882 41 H 0.065 0.935 42 H 0.045 0.955 43 H 0.052 0.948 44 H 0.067 0.933 45 H 0.011 0.989 46 H 0.101 0.899 47 H 0.141 0.859 48 H 0.167 0.833 49 H 0.183 0.817 50 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 7.142 -5.210 -22.884 24.533 hybrid contribution -1.781 0.151 1.661 2.440 sum 5.361 -5.059 -21.224 22.467 Atomic orbital electron populations 1.21725 0.92575 1.03615 1.02287 1.22783 0.96905 0.82500 1.00468 1.87998 1.18877 1.28584 1.94312 1.20702 0.83069 0.98774 0.90324 0.86185 1.21275 0.80604 0.76117 0.92049 1.90766 1.55566 1.51117 1.47934 1.49592 1.03452 1.71612 1.12098 1.23841 0.79891 1.02045 0.96414 1.22832 0.98671 0.95180 0.95238 0.84998 1.21670 1.01367 0.94028 0.96960 1.20963 0.88700 0.95635 0.93216 1.43644 1.16966 1.01520 1.70034 1.19332 1.05489 1.01083 1.11888 0.92765 1.25520 1.02231 0.99543 0.96604 1.70166 1.36717 1.29379 1.21622 0.85475 0.81334 0.77707 0.77670 1.19414 1.23477 1.20669 1.19775 0.99755 0.83229 0.91824 1.22705 0.88994 0.99389 0.89173 0.89127 1.19391 0.98189 0.92698 0.99312 1.20925 0.99256 0.94018 0.98897 1.21302 0.98796 0.97208 0.97870 1.21525 0.94192 0.99908 0.97283 1.21491 1.00372 0.91560 0.99406 1.21232 0.94960 1.00651 0.95220 0.88326 0.94343 0.91028 0.89915 0.95124 0.86196 0.88031 0.94156 0.88238 0.93536 0.95462 0.94802 0.93345 0.98938 0.89891 0.85873 0.83257 0.81714 0.82432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 10.28 71.98 0.74 -2.82 16 2 C 0.05 1.38 6.46 71.98 0.46 1.84 16 3 O -0.38 -13.54 8.84 -129.99 -1.15 -14.69 16 4 C 0.13 4.22 2.59 29.10 0.08 4.29 16 5 H 0.12 2.76 7.65 -2.38 -0.02 2.74 16 6 C 0.51 21.38 7.30 87.66 0.64 22.02 16 7 O -0.58 -32.29 15.75 15.95 0.25 -32.04 16 8 N -0.63 -22.27 3.29 -865.63 -2.85 -25.13 16 9 C 0.10 2.09 7.56 81.18 0.61 2.70 16 10 C -0.10 -2.64 4.57 -10.50 -0.05 -2.69 16 11 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 12 C -0.10 -3.10 5.71 30.66 0.17 -2.92 16 13 C 0.14 5.82 6.46 86.42 0.56 6.38 16 14 N -0.60 -32.25 3.03 -707.25 -2.14 -34.40 16 15 C -0.25 -15.21 9.53 84.03 0.80 -14.41 16 16 H 0.05 3.33 7.83 -2.91 -0.02 3.30 16 17 C -0.04 -2.79 4.94 84.86 0.42 -2.37 16 18 N -0.93 -61.72 10.94 21.65 0.24 -61.48 16 19 Si 0.95 52.44 29.58 68.60 2.03 54.47 16 20 H -0.27 -14.24 7.11 99.48 0.71 -13.53 16 21 H -0.31 -17.74 7.11 99.48 0.71 -17.03 16 22 H -0.28 -14.76 7.11 99.48 0.71 -14.05 16 23 C 0.18 9.61 4.59 85.91 0.39 10.00 16 24 C 0.10 3.85 4.02 38.68 0.16 4.01 16 25 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 26 C -0.10 -2.77 4.75 -19.87 -0.09 -2.86 16 27 C -0.11 -3.84 9.35 22.27 0.21 -3.63 16 28 C -0.13 -3.66 10.05 22.27 0.22 -3.44 16 29 C -0.11 -2.20 10.05 22.27 0.22 -1.97 16 30 C -0.11 -1.79 10.05 22.27 0.22 -1.57 16 31 C -0.10 -1.98 7.41 22.27 0.16 -1.81 16 32 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.08 1.66 8.09 -2.39 -0.02 1.64 16 36 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.10 1.75 4.53 -2.39 -0.01 1.73 16 39 H 0.04 1.44 7.69 -2.39 -0.02 1.42 16 40 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.05 1.96 7.87 -2.39 -0.02 1.94 16 42 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 43 H 0.24 15.75 8.31 -92.71 -0.77 14.98 16 44 H 0.05 3.12 4.96 -2.39 -0.01 3.11 16 45 H -0.01 -0.41 7.99 -2.39 -0.02 -0.43 16 46 H 0.08 3.46 7.77 -2.91 -0.02 3.44 16 47 H 0.12 3.14 8.06 -2.91 -0.02 3.11 16 48 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 49 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 50 H 0.16 1.84 7.21 -2.91 -0.02 1.82 16 Total: -1.00 -92.46 395.76 3.24 -89.23 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 0.92 Total: 13.30 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 5.94 Total: 10.73 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -4.76 Total: -121.00 kcal Atomic # 8 Polarization: -45.83 SS G_CDS: -0.90 Total: -46.73 kcal Atomic # 14 Polarization: 52.44 SS G_CDS: 2.03 Total: 54.47 kcal Total: -92.46 3.24 -89.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222071552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.297 kcal (2) G-P(sol) polarization free energy of solvation -92.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds