Wall clock time and date at job start Wed Apr 1 2020 03:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47230 * 2 1 4 4 C 1.42898 * 114.00186 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47319 * 180.02562 * 4 3 2 6 6 C 1.52992 * 109.47482 * 180.02562 * 5 4 3 7 7 N 1.46901 * 109.47859 * 179.97438 * 6 5 4 8 8 C 1.46848 * 110.99510 * 294.21467 * 7 6 5 9 9 C 1.53048 * 109.52064 * 174.15537 * 8 7 6 10 10 C 1.53118 * 109.27745 * 59.17773 * 9 8 7 11 11 C 1.52997 * 109.57543 * 182.41065 * 10 9 8 12 12 N 1.46502 * 109.47189 * 294.71501 * 11 10 9 13 13 C 1.34772 * 120.00365 * 179.97438 * 12 11 10 14 14 O 1.21281 * 119.99837 * 359.97438 * 13 12 11 15 15 C 1.50703 * 120.00064 * 179.97438 * 13 12 11 16 16 S 1.80995 * 109.46951 * 180.02562 * 15 13 12 17 17 C 1.76197 * 99.99916 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00132 * 359.97438 * 17 16 15 19 19 C 1.38801 * 119.99939 * 179.97438 * 17 16 15 20 20 N 1.31627 * 120.00221 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99953 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46858 * 90.00149 * 21 19 17 23 23 H 1.48500 * 109.47160 * 210.00191 * 21 19 17 24 24 H 1.48502 * 109.47124 * 330.00442 * 21 19 17 25 25 C 1.53120 * 109.16026 * 302.34502 * 10 9 8 26 26 C 1.46844 * 111.00526 * 170.00090 * 7 6 5 27 27 H 1.08997 * 109.47268 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47349 * 300.00228 * 1 2 3 29 29 H 1.09000 * 109.46950 * 59.99785 * 1 2 3 30 30 H 1.09001 * 109.47081 * 240.00210 * 2 1 3 31 31 H 1.08999 * 109.47384 * 119.99902 * 2 1 3 32 32 H 1.09002 * 109.47259 * 300.00293 * 4 3 2 33 33 H 1.09001 * 109.47074 * 60.00315 * 4 3 2 34 34 H 1.09002 * 109.47153 * 300.00307 * 5 4 3 35 35 H 1.08998 * 109.47533 * 59.99936 * 5 4 3 36 36 H 1.09002 * 109.47103 * 300.00247 * 6 5 4 37 37 H 1.09001 * 109.47066 * 60.00169 * 6 5 4 38 38 H 1.08996 * 109.46339 * 294.16557 * 8 7 6 39 39 H 1.08994 * 109.46869 * 54.14232 * 8 7 6 40 40 H 1.08998 * 109.49998 * 299.23732 * 9 8 7 41 41 H 1.08994 * 109.50211 * 179.11499 * 9 8 7 42 42 H 1.09002 * 109.52451 * 62.24612 * 10 9 8 43 43 H 1.09003 * 109.47495 * 54.71055 * 11 10 9 44 44 H 1.08998 * 109.47327 * 174.71638 * 11 10 9 45 45 H 0.97008 * 119.99508 * 359.97438 * 12 11 10 46 46 H 1.08993 * 109.46900 * 300.00062 * 15 13 12 47 47 H 1.08998 * 109.46936 * 60.00064 * 15 13 12 48 48 H 0.97000 * 120.00377 * 179.97438 * 20 19 17 49 49 H 1.09004 * 109.50479 * 297.71302 * 25 10 9 50 50 H 1.08998 * 109.50625 * 177.59615 * 25 10 9 51 51 H 1.09003 * 109.46077 * 305.85847 * 26 7 6 52 52 H 1.08995 * 109.45945 * 65.83669 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8254 2.9384 0.0012 6 6 5.3505 3.0592 0.0012 7 7 5.7294 4.4785 0.0011 8 6 5.3218 5.1319 -1.2493 9 6 5.5997 6.6340 -1.1556 10 6 7.0937 6.8570 -0.9047 11 6 7.3697 8.3539 -0.7501 12 7 7.0907 9.0353 -2.0166 13 6 7.2637 10.3681 -2.1172 14 8 7.6500 11.0034 -1.1591 15 6 6.9772 11.0689 -3.4203 16 16 7.3036 12.8398 -3.2373 17 6 6.8976 13.3949 -4.8595 18 1 6.5643 12.6877 -5.6046 19 6 7.0061 14.7411 -5.1798 20 7 7.4127 15.6029 -4.2718 21 14 6.5763 15.3295 -6.8999 22 1 5.1362 15.6876 -6.9550 23 1 7.3960 16.5217 -7.2344 24 1 6.8549 14.2469 -7.8774 25 6 7.5026 6.1262 0.3772 26 6 7.1695 4.6389 0.2391 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8333 0.9767 0.8908 33 1 3.8340 0.9765 -0.8892 34 1 3.4229 3.4222 -0.8888 35 1 3.4223 3.4217 0.8911 36 1 5.7533 2.5753 0.8909 37 1 5.7533 2.5761 -0.8891 38 1 5.8862 4.7093 -2.0805 39 1 4.2567 4.9693 -1.4137 40 1 5.0251 7.0597 -0.3331 41 1 5.3117 7.1163 -2.0896 42 1 7.6666 6.4658 -1.7455 43 1 6.7289 8.7627 0.0312 44 1 8.4146 8.5046 -0.4790 45 1 6.7813 8.5271 -2.7829 46 1 7.6186 10.6604 -4.2011 47 1 5.9326 10.9177 -3.6921 48 1 7.4889 16.5437 -4.4957 49 1 6.9578 6.5441 1.2239 50 1 8.5739 6.2457 0.5383 51 1 7.4463 4.1180 1.1558 52 1 7.7251 4.2188 -0.5992 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222425783.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:42 Heat of formation + Delta-G solvation = -105.306792 kcal Electronic energy + Delta-G solvation = -26819.492587 eV Core-core repulsion = 22944.260702 eV Total energy + Delta-G solvation = -3875.231884 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.91612 -38.94394 -38.45956 -36.00594 -33.89579 -32.41796 -32.36075 -31.21847 -30.84899 -29.39628 -26.97799 -25.47329 -24.61809 -23.73811 -23.26291 -22.23131 -21.20519 -20.41536 -19.86692 -17.83715 -17.27418 -16.87565 -16.43922 -16.02829 -15.92099 -15.69662 -15.22706 -14.99282 -14.78931 -14.69680 -14.46117 -14.26621 -14.04310 -13.56311 -13.49410 -13.16061 -13.04907 -12.83692 -12.75483 -12.54674 -12.39639 -12.13857 -11.94356 -11.87465 -11.66272 -11.50969 -11.41755 -11.22651 -11.05064 -11.00841 -10.92233 -10.80732 -10.68763 -10.49957 -10.07215 -9.79505 -9.35397 -9.05330 -8.82307 -8.70707 -8.21134 -6.47781 -6.19937 -3.90272 3.02591 3.07598 3.15125 3.23534 3.29397 3.34122 3.60692 3.76290 4.22163 4.35913 4.41305 4.49867 4.51715 4.57153 4.61667 4.72511 4.81540 4.86351 4.86610 4.94589 4.97542 5.02834 5.08231 5.15186 5.17384 5.17967 5.22841 5.27173 5.32482 5.40770 5.44454 5.48720 5.58690 5.62640 5.64078 5.67694 5.72762 5.79915 5.84747 5.86224 5.93019 5.97532 6.16156 6.17173 6.65154 6.69077 6.71860 6.76199 7.61181 7.75770 8.36889 8.66589 9.25348 10.87519 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016006 B = 0.001474 C = 0.001374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.893278 B =18997.362998 C =20377.007906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.389 6.389 4 C 0.064 3.936 5 C -0.117 4.117 6 C 0.060 3.940 7 N -0.537 5.537 8 C 0.053 3.947 9 C -0.113 4.113 10 C -0.100 4.100 11 C 0.127 3.873 12 N -0.738 5.738 13 C 0.531 3.469 14 O -0.518 6.518 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.109 4.109 26 C 0.059 3.941 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.396 0.604 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.268 0.732 49 H 0.077 0.923 50 H 0.071 0.929 51 H 0.075 0.925 52 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.720 -34.333 8.510 36.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.309 6.309 4 C -0.013 4.013 5 C -0.154 4.154 6 C -0.068 4.068 7 N -0.262 5.262 8 C -0.075 4.075 9 C -0.151 4.151 10 C -0.119 4.119 11 C 0.003 3.997 12 N -0.393 5.393 13 C 0.317 3.683 14 O -0.393 6.393 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.147 4.147 26 C -0.069 4.069 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.230 0.770 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.078 0.922 49 H 0.095 0.905 50 H 0.090 0.910 51 H 0.094 0.906 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.384 -32.685 10.551 34.934 hybrid contribution -0.245 -1.313 -3.289 3.550 sum -6.629 -33.999 7.262 35.392 Atomic orbital electron populations 1.21749 0.93633 1.02288 1.03300 1.22458 0.95733 0.83745 0.99980 1.87895 1.21107 1.26471 1.95419 1.22424 0.81323 0.97516 1.00006 1.21507 0.95036 0.94627 1.04277 1.21942 0.95133 0.88837 1.00919 1.61871 1.16051 1.12791 1.35465 1.22175 1.00921 0.94763 0.89643 1.21670 0.95690 0.94960 1.02749 1.21448 0.96922 0.94660 0.98831 1.21297 1.01264 0.90379 0.86733 1.46018 1.70893 1.08086 1.14307 1.20294 0.76637 0.81369 0.90037 1.90701 1.44202 1.65094 1.39264 1.23530 1.04675 1.05229 0.96981 1.85397 1.87700 0.92414 1.17862 1.22873 1.52226 0.95918 0.97387 0.90955 1.24985 0.94703 0.95599 0.98244 1.70017 1.43675 1.03038 1.33570 0.86176 0.78493 0.78319 0.82554 1.20270 1.20748 1.19721 1.21560 1.01331 0.94020 0.97817 1.22065 0.87177 0.97086 1.00592 0.91083 0.91751 0.91774 0.93490 0.93446 0.93325 0.93551 0.90924 0.90059 0.90604 0.94820 0.94928 0.90274 0.90544 0.91212 0.90881 0.91480 0.91689 0.76977 0.89322 0.89274 0.92193 0.90478 0.91002 0.90606 0.94896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.28 37.16 0.38 -0.37 16 2 C 0.06 0.33 6.66 37.16 0.25 0.58 16 3 O -0.39 -3.22 10.34 -35.23 -0.36 -3.58 16 4 C 0.06 0.40 5.94 37.16 0.22 0.62 16 5 C -0.12 -0.77 5.51 -26.74 -0.15 -0.92 16 6 C 0.06 0.37 4.96 -3.83 -0.02 0.35 16 7 N -0.54 -4.00 4.66 -234.67 -1.09 -5.09 16 8 C 0.05 0.39 5.29 -3.83 -0.02 0.37 16 9 C -0.11 -0.93 5.23 -26.65 -0.14 -1.07 16 10 C -0.10 -0.83 2.29 -90.50 -0.21 -1.04 16 11 C 0.13 1.48 5.07 -4.04 -0.02 1.46 16 12 N -0.74 -9.89 5.31 -60.29 -0.32 -10.21 16 13 C 0.53 10.04 7.85 -10.99 -0.09 9.95 16 14 O -0.52 -11.99 15.86 5.56 0.09 -11.90 16 15 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 16 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 17 C -0.54 -15.39 9.50 30.94 0.29 -15.09 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.34 13.22 55.49 0.73 -25.60 16 21 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 C -0.11 -0.82 5.38 -26.65 -0.14 -0.96 16 26 C 0.06 0.40 5.46 -3.83 -0.02 0.38 16 27 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.53 6.43 -51.93 -0.33 0.20 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.41 7.99 -51.93 -0.41 -0.01 16 37 H 0.03 0.20 8.12 -51.93 -0.42 -0.22 16 38 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.08 0.59 6.21 -51.93 -0.32 0.26 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.56 7.28 -51.93 -0.38 0.18 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.40 4.17 7.69 -40.82 -0.31 3.86 16 46 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 47 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 48 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 49 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 50 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 51 H 0.08 0.46 8.02 -51.93 -0.42 0.04 16 52 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 426.30 15.07 6.42 6.42 Total: -1.00 -34.84 426.30 -11.06 -45.89 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -9.76 Total: -1.93 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: 0.47 Total: -6.61 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: -0.68 Total: -40.91 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.28 Total: -15.49 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -34.84 -11.06 -45.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222425783.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.414 kcal (2) G-P(sol) polarization free energy of solvation -34.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds