Wall clock time and date at job start Wed Apr 1 2020 03:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47254 * 2 1 4 4 C 1.42897 * 114.00155 * 174.50324 * 3 2 1 5 5 H 1.09003 * 109.47163 * 336.11753 * 4 3 2 6 6 C 1.53005 * 109.47181 * 96.11811 * 4 3 2 7 7 N 1.46895 * 109.46846 * 293.96624 * 6 4 3 8 8 C 1.46905 * 110.99813 * 163.41928 * 7 6 4 9 9 C 1.46903 * 111.00099 * 287.36937 * 7 6 4 10 10 C 1.53005 * 109.47219 * 170.00135 * 9 7 6 11 11 C 1.53000 * 109.46775 * 180.02562 * 10 9 7 12 12 N 1.46508 * 109.46421 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99376 * 179.97438 * 12 11 10 14 14 O 1.21284 * 120.00372 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99679 * 179.97438 * 13 12 11 16 16 S 1.81003 * 109.46876 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99618 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00142 * 359.97438 * 17 16 15 19 19 C 1.38806 * 119.99652 * 179.97438 * 17 16 15 20 20 N 1.31636 * 119.99618 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 119.99944 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47407 * 90.00481 * 21 19 17 23 23 H 1.48504 * 109.46784 * 210.00132 * 21 19 17 24 24 H 1.48496 * 109.47517 * 329.99780 * 21 19 17 25 25 C 1.53003 * 109.47334 * 216.11931 * 4 3 2 26 26 C 1.52999 * 117.49892 * 132.90270 * 25 4 3 27 27 C 1.52991 * 117.49774 * 64.23907 * 25 4 3 28 28 H 1.08998 * 109.47008 * 59.99764 * 1 2 3 29 29 H 1.09001 * 109.46993 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47317 * 299.99782 * 1 2 3 31 31 H 1.09000 * 109.47317 * 240.00218 * 2 1 3 32 32 H 1.09005 * 109.47362 * 120.00263 * 2 1 3 33 33 H 1.09001 * 109.46832 * 53.96134 * 6 4 3 34 34 H 1.08993 * 109.47108 * 173.96317 * 6 4 3 35 35 H 1.09000 * 109.46965 * 65.89704 * 8 7 6 36 36 H 1.09004 * 109.47014 * 185.88959 * 8 7 6 37 37 H 1.08996 * 109.47028 * 305.89033 * 8 7 6 38 38 H 1.08996 * 109.47538 * 290.00301 * 9 7 6 39 39 H 1.09003 * 109.46689 * 50.00931 * 9 7 6 40 40 H 1.08996 * 109.47002 * 300.00495 * 10 9 7 41 41 H 1.08997 * 109.46681 * 60.00064 * 10 9 7 42 42 H 1.08996 * 109.47334 * 299.99770 * 11 10 9 43 43 H 1.08993 * 109.47473 * 60.00573 * 11 10 9 44 44 H 0.96990 * 120.00570 * 359.97438 * 12 11 10 45 45 H 1.09002 * 109.46590 * 299.99704 * 15 13 12 46 46 H 1.08993 * 109.46842 * 60.00181 * 15 13 12 47 47 H 0.96991 * 119.99488 * 180.02562 * 20 19 17 48 48 H 1.09001 * 115.54810 * 278.57297 * 25 4 3 49 49 H 1.08995 * 117.50054 * 359.97438 * 26 25 4 50 50 H 1.09004 * 117.49871 * 145.02462 * 26 25 4 51 51 H 1.09000 * 117.49880 * 214.97813 * 27 25 4 52 52 H 1.09004 * 117.50449 * 359.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4252 1.4621 0.1250 5 1 3.8209 0.5684 0.6076 6 6 4.0493 1.6105 -1.2640 7 7 3.8470 0.3713 -2.0265 8 6 4.0683 0.5942 -3.4616 9 6 4.7105 -0.7045 -1.5216 10 6 4.3003 -2.0314 -2.1635 11 6 5.1993 -3.1520 -1.6371 12 7 4.8069 -4.4224 -2.2522 13 6 5.4648 -5.5555 -1.9363 14 8 6.3811 -5.5236 -1.1425 15 6 5.0608 -6.8625 -2.5687 16 16 6.1244 -8.1881 -1.9460 17 6 5.4509 -9.5589 -2.8246 18 1 4.6231 -9.4118 -3.5025 19 6 5.9843 -10.8278 -2.6455 20 7 5.4814 -11.8518 -3.3022 21 14 7.4164 -11.0820 -1.4735 22 1 6.8972 -11.3793 -0.1144 23 1 8.2466 -12.2191 -1.9458 24 1 8.2442 -9.8500 -1.4287 25 6 3.7649 2.6911 0.9707 26 6 4.7949 2.5168 2.0885 27 6 3.3133 2.6896 2.4324 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.5761 2.4409 -1.7881 34 1 5.1170 1.8052 -1.1637 35 1 5.1164 0.8392 -3.6338 36 1 3.8111 -0.3098 -4.0136 37 1 3.4417 1.4185 -3.8022 38 1 5.7483 -0.4852 -1.7720 39 1 4.6053 -0.7768 -0.4391 40 1 3.2625 -2.2507 -1.9131 41 1 4.4054 -1.9591 -3.2460 42 1 6.2373 -2.9328 -1.8872 43 1 5.0939 -3.2242 -0.5546 44 1 4.0739 -4.4481 -2.8868 45 1 4.0229 -7.0819 -2.3180 46 1 5.1658 -6.7901 -3.6511 47 1 5.8538 -12.7385 -3.1768 48 1 3.7531 3.6439 0.4413 49 1 5.2302 1.5265 2.2218 50 1 5.4605 3.3550 2.2949 51 1 3.0049 3.6414 2.8649 52 1 2.7738 1.8132 2.7917 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234154187.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:24 Heat of formation + Delta-G solvation = -64.396085 kcal Electronic energy + Delta-G solvation = -27587.859612 eV Core-core repulsion = 23714.401749 eV Total energy + Delta-G solvation = -3873.457863 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.78023 -39.26037 -37.64227 -36.69371 -35.14703 -32.44732 -32.29310 -31.46273 -29.61457 -29.16539 -26.58766 -25.62477 -24.89252 -23.04724 -22.67500 -22.32125 -21.31732 -20.86164 -20.28947 -17.87410 -17.28851 -16.58893 -16.50083 -16.37779 -15.87482 -15.73687 -15.44489 -15.04746 -14.95256 -14.85790 -14.42884 -14.23157 -13.80695 -13.61732 -13.37476 -13.25140 -12.93831 -12.80477 -12.78871 -12.39924 -12.22005 -11.98881 -11.95582 -11.87818 -11.85305 -11.60040 -11.55301 -11.27100 -11.21327 -11.01588 -10.97674 -10.70882 -10.60994 -10.57656 -9.86482 -9.79733 -9.54202 -9.03142 -8.97452 -8.68367 -8.50797 -6.92509 -6.29450 -4.01214 2.74746 2.96693 3.06477 3.22020 3.32601 3.43188 3.50097 3.65846 3.74571 4.27582 4.32663 4.41985 4.48160 4.58745 4.63385 4.68795 4.73067 4.78641 4.83748 4.90003 4.95120 4.99213 5.08877 5.09515 5.10677 5.18599 5.20615 5.22269 5.29808 5.30971 5.34775 5.45928 5.46457 5.48004 5.57420 5.59490 5.68271 5.73917 5.74879 5.79892 5.83738 5.89548 5.94043 6.00786 6.49237 6.57247 6.60638 7.05317 7.59785 7.93680 8.41151 8.47979 9.16720 10.79767 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017651 B = 0.001702 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.970361 B =16451.591968 C =16611.685647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 O -0.372 6.372 4 C 0.128 3.872 5 H 0.061 0.939 6 C 0.038 3.962 7 N -0.538 5.538 8 C 0.023 3.977 9 C 0.053 3.947 10 C -0.127 4.127 11 C 0.123 3.877 12 N -0.737 5.737 13 C 0.530 3.470 14 O -0.521 6.521 15 C -0.124 4.124 16 S -0.142 6.142 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.157 4.157 26 C -0.176 4.176 27 C -0.165 4.165 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.037 0.963 33 H 0.083 0.917 34 H 0.046 0.954 35 H 0.026 0.974 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.040 0.960 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.400 0.600 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.271 0.729 48 H 0.108 0.892 49 H 0.095 0.905 50 H 0.097 0.903 51 H 0.095 0.905 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.714 32.605 4.895 33.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.018 4.018 3 O -0.291 6.291 4 C 0.069 3.931 5 H 0.079 0.921 6 C -0.090 4.090 7 N -0.262 5.262 8 C -0.125 4.125 9 C -0.076 4.076 10 C -0.166 4.166 11 C -0.002 4.002 12 N -0.391 5.391 13 C 0.316 3.684 14 O -0.395 6.395 15 C -0.275 4.275 16 S 0.084 5.916 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.176 4.176 26 C -0.213 4.213 27 C -0.202 4.202 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.234 0.766 45 H 0.115 0.885 46 H 0.115 0.885 47 H 0.081 0.919 48 H 0.126 0.874 49 H 0.113 0.887 50 H 0.116 0.884 51 H 0.113 0.887 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.784 32.477 6.219 33.569 hybrid contribution 0.107 -0.390 -0.978 1.058 sum -5.677 32.087 5.241 33.004 Atomic orbital electron populations 1.21736 0.94344 1.02052 1.02610 1.22588 0.94886 0.83712 1.00659 1.87867 1.20181 1.26734 1.94327 1.21534 0.82380 0.95870 0.93299 0.92066 1.22638 0.98967 0.92444 0.94955 1.61951 1.54289 1.06454 1.03510 1.22435 0.99454 1.02475 0.88150 1.22116 0.94648 0.90830 0.99971 1.21787 1.00565 0.93113 1.01092 1.21196 0.98557 0.82459 0.97996 1.45939 1.37924 1.07262 1.47992 1.20291 0.81869 0.84754 0.81498 1.90699 1.28781 1.86194 1.33843 1.23280 1.04984 0.95268 1.03940 1.84787 1.45471 1.00614 1.60753 1.22320 1.21951 0.92484 1.30155 0.89375 1.24720 0.96650 0.94736 0.95233 1.69940 1.41160 0.99812 1.40750 0.86730 0.83239 0.80299 0.81553 1.19203 1.19941 1.15941 1.22294 1.04891 0.99481 0.90909 1.23048 0.92537 1.03339 1.02374 1.22831 0.96795 1.03462 0.97106 0.92004 0.91302 0.92451 0.91243 0.94483 0.89882 0.93625 0.95537 0.90889 0.91353 0.94152 0.90659 0.90383 0.90997 0.91762 0.91658 0.76628 0.88476 0.88463 0.91944 0.87364 0.88686 0.88409 0.88655 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.71 16 2 C 0.06 0.47 6.36 37.16 0.24 0.71 16 3 O -0.37 -3.40 9.93 -35.23 -0.35 -3.75 16 4 C 0.13 0.94 2.45 -26.73 -0.07 0.88 16 5 H 0.06 0.47 5.75 -51.93 -0.30 0.17 16 6 C 0.04 0.26 4.64 -3.82 -0.02 0.24 16 7 N -0.54 -3.78 3.28 -242.91 -0.80 -4.58 16 8 C 0.02 0.14 9.27 60.07 0.56 0.70 16 9 C 0.05 0.37 4.80 -3.82 -0.02 0.35 16 10 C -0.13 -0.94 5.25 -26.73 -0.14 -1.08 16 11 C 0.12 1.28 5.67 -4.04 -0.02 1.26 16 12 N -0.74 -9.06 5.56 -60.29 -0.33 -9.39 16 13 C 0.53 9.32 7.85 -10.98 -0.09 9.23 16 14 O -0.52 -11.22 15.86 5.55 0.09 -11.13 16 15 C -0.12 -2.38 6.16 36.01 0.22 -2.16 16 16 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 17 C -0.52 -15.02 10.04 30.94 0.31 -14.71 16 18 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 19 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 20 N -0.88 -26.53 13.97 55.49 0.78 -25.75 16 21 Si 0.86 21.79 27.74 -169.99 -4.71 17.08 16 22 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 25 C -0.16 -1.04 5.35 -90.62 -0.48 -1.52 16 26 C -0.18 -1.01 10.18 -26.69 -0.27 -1.29 16 27 C -0.16 -1.05 10.22 -26.70 -0.27 -1.33 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.59 6.88 -51.93 -0.36 0.23 16 32 H 0.04 0.29 7.97 -51.93 -0.41 -0.12 16 33 H 0.08 0.58 7.86 -51.93 -0.41 0.17 16 34 H 0.05 0.29 8.04 -51.93 -0.42 -0.12 16 35 H 0.03 0.16 8.13 -51.93 -0.42 -0.26 16 36 H 0.07 0.44 6.56 -51.93 -0.34 0.10 16 37 H 0.07 0.40 7.95 -51.93 -0.41 -0.01 16 38 H 0.04 0.29 8.11 -51.93 -0.42 -0.13 16 39 H 0.08 0.54 6.36 -51.93 -0.33 0.21 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.50 6.59 -51.93 -0.34 0.16 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.40 3.77 8.47 -40.82 -0.35 3.42 16 45 H 0.10 1.73 8.14 -51.91 -0.42 1.30 16 46 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 47 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 48 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.09 0.55 8.07 -51.93 -0.42 0.13 16 50 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 52 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 430.62 15.07 6.49 6.49 Total: -1.00 -33.92 430.62 -10.19 -44.11 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -9.58 Total: -0.74 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 0.23 Total: -6.72 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: -0.36 Total: -39.73 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.26 Total: -14.88 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.71 Total: 17.08 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 6.49 Total: 6.49 kcal Total: -33.92 -10.19 -44.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234154187.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.287 kcal (2) G-P(sol) polarization free energy of solvation -33.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds