Wall clock time and date at job start Wed Apr 1 2020 03:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47254 * 2 1 4 4 C 1.42897 * 114.00155 * 174.50324 * 3 2 1 5 5 H 1.09003 * 109.47163 * 336.11753 * 4 3 2 6 6 C 1.53005 * 109.47181 * 96.11811 * 4 3 2 7 7 N 1.46895 * 109.46846 * 293.96624 * 6 4 3 8 8 C 1.46905 * 110.99813 * 163.41928 * 7 6 4 9 9 C 1.46903 * 111.00099 * 287.36937 * 7 6 4 10 10 C 1.53005 * 109.47219 * 170.00135 * 9 7 6 11 11 C 1.53000 * 109.46775 * 180.02562 * 10 9 7 12 12 N 1.46508 * 109.46421 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99376 * 179.97438 * 12 11 10 14 14 O 1.21284 * 120.00372 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99679 * 179.97438 * 13 12 11 16 16 S 1.81003 * 109.46876 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99618 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00142 * 359.97438 * 17 16 15 19 19 C 1.38806 * 119.99652 * 179.97438 * 17 16 15 20 20 N 1.31636 * 119.99618 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 119.99944 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47407 * 90.00481 * 21 19 17 23 23 H 1.48504 * 109.46784 * 210.00132 * 21 19 17 24 24 H 1.48496 * 109.47517 * 329.99780 * 21 19 17 25 25 C 1.53003 * 109.47334 * 216.11931 * 4 3 2 26 26 C 1.52999 * 117.49892 * 132.90270 * 25 4 3 27 27 C 1.52991 * 117.49774 * 64.23907 * 25 4 3 28 28 H 1.08998 * 109.47008 * 59.99764 * 1 2 3 29 29 H 1.09001 * 109.46993 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47317 * 299.99782 * 1 2 3 31 31 H 1.09000 * 109.47317 * 240.00218 * 2 1 3 32 32 H 1.09005 * 109.47362 * 120.00263 * 2 1 3 33 33 H 1.09001 * 109.46832 * 53.96134 * 6 4 3 34 34 H 1.08993 * 109.47108 * 173.96317 * 6 4 3 35 35 H 1.09000 * 109.46965 * 65.89704 * 8 7 6 36 36 H 1.09004 * 109.47014 * 185.88959 * 8 7 6 37 37 H 1.08996 * 109.47028 * 305.89033 * 8 7 6 38 38 H 1.08996 * 109.47538 * 290.00301 * 9 7 6 39 39 H 1.09003 * 109.46689 * 50.00931 * 9 7 6 40 40 H 1.08996 * 109.47002 * 300.00495 * 10 9 7 41 41 H 1.08997 * 109.46681 * 60.00064 * 10 9 7 42 42 H 1.08996 * 109.47334 * 299.99770 * 11 10 9 43 43 H 1.08993 * 109.47473 * 60.00573 * 11 10 9 44 44 H 0.96990 * 120.00570 * 359.97438 * 12 11 10 45 45 H 1.09002 * 109.46590 * 299.99704 * 15 13 12 46 46 H 1.08993 * 109.46842 * 60.00181 * 15 13 12 47 47 H 0.96991 * 119.99488 * 180.02562 * 20 19 17 48 48 H 1.09001 * 115.54810 * 278.57297 * 25 4 3 49 49 H 1.08995 * 117.50054 * 359.97438 * 26 25 4 50 50 H 1.09004 * 117.49871 * 145.02462 * 26 25 4 51 51 H 1.09000 * 117.49880 * 214.97813 * 27 25 4 52 52 H 1.09004 * 117.50449 * 359.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4252 1.4621 0.1250 5 1 3.8209 0.5684 0.6076 6 6 4.0493 1.6105 -1.2640 7 7 3.8470 0.3713 -2.0265 8 6 4.0683 0.5942 -3.4616 9 6 4.7105 -0.7045 -1.5216 10 6 4.3003 -2.0314 -2.1635 11 6 5.1993 -3.1520 -1.6371 12 7 4.8069 -4.4224 -2.2522 13 6 5.4648 -5.5555 -1.9363 14 8 6.3811 -5.5236 -1.1425 15 6 5.0608 -6.8625 -2.5687 16 16 6.1244 -8.1881 -1.9460 17 6 5.4509 -9.5589 -2.8246 18 1 4.6231 -9.4118 -3.5025 19 6 5.9843 -10.8278 -2.6455 20 7 5.4814 -11.8518 -3.3022 21 14 7.4164 -11.0820 -1.4735 22 1 6.8972 -11.3793 -0.1144 23 1 8.2466 -12.2191 -1.9458 24 1 8.2442 -9.8500 -1.4287 25 6 3.7649 2.6911 0.9707 26 6 4.7949 2.5168 2.0885 27 6 3.3133 2.6896 2.4324 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.5761 2.4409 -1.7881 34 1 5.1170 1.8052 -1.1637 35 1 5.1164 0.8392 -3.6338 36 1 3.8111 -0.3098 -4.0136 37 1 3.4417 1.4185 -3.8022 38 1 5.7483 -0.4852 -1.7720 39 1 4.6053 -0.7768 -0.4391 40 1 3.2625 -2.2507 -1.9131 41 1 4.4054 -1.9591 -3.2460 42 1 6.2373 -2.9328 -1.8872 43 1 5.0939 -3.2242 -0.5546 44 1 4.0739 -4.4481 -2.8868 45 1 4.0229 -7.0819 -2.3180 46 1 5.1658 -6.7901 -3.6511 47 1 5.8538 -12.7385 -3.1768 48 1 3.7531 3.6439 0.4413 49 1 5.2302 1.5265 2.2218 50 1 5.4605 3.3550 2.2949 51 1 3.0049 3.6414 2.8649 52 1 2.7738 1.8132 2.7917 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234154187.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:23 Heat of formation + Delta-G solvation = -86.251319 kcal Electronic energy + Delta-G solvation = -27588.807326 eV Core-core repulsion = 23714.401749 eV Total energy + Delta-G solvation = -3874.405577 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.69747 -40.24696 -38.25421 -37.25410 -36.19715 -34.67075 -33.16489 -32.18740 -30.71711 -29.93650 -27.88767 -27.23929 -25.58099 -23.62880 -23.18354 -23.01711 -22.10496 -21.55777 -21.25803 -19.86846 -17.94304 -17.76861 -17.47280 -17.17207 -17.08768 -16.80349 -16.50976 -16.17430 -15.86388 -15.79831 -15.41219 -15.01311 -14.97861 -14.90909 -14.60048 -14.16163 -14.06650 -13.69443 -13.45938 -13.35061 -13.24886 -13.03303 -12.94399 -12.74262 -12.67640 -12.56244 -12.44129 -12.40698 -12.16904 -12.15081 -11.87285 -11.83140 -11.54572 -11.23314 -11.17083 -11.08733 -11.01598 -10.53693 -10.40140 -10.14305 -9.22525 -8.99713 -8.51502 -6.22338 0.99156 1.31426 1.46842 1.56002 1.56242 2.20623 2.25953 2.53650 2.70800 2.86082 2.86687 3.19880 3.72583 3.83413 3.89088 3.94487 4.07911 4.09800 4.11797 4.13752 4.23679 4.26341 4.32927 4.39241 4.46374 4.47458 4.47905 4.52181 4.59477 4.65055 4.70014 4.76902 4.77257 4.78163 4.92775 4.97479 5.01978 5.05435 5.13645 5.17348 5.22539 5.23510 5.25722 5.34055 5.42555 5.70837 6.04617 6.05165 6.11580 6.45530 6.47166 6.93685 7.19312 8.60801 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017651 B = 0.001702 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.970361 B =16451.591968 C =16611.685647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 O -0.388 6.388 4 C 0.128 3.872 5 H 0.057 0.943 6 C 0.042 3.958 7 N -0.543 5.543 8 C 0.023 3.977 9 C 0.056 3.944 10 C -0.113 4.113 11 C 0.124 3.876 12 N -0.711 5.711 13 C 0.534 3.466 14 O -0.565 6.565 15 C -0.112 4.112 16 S -0.178 6.178 17 C -0.529 4.529 18 H 0.063 0.937 19 C 0.045 3.955 20 N -0.916 5.916 21 Si 0.915 3.085 22 H -0.262 1.262 23 H -0.259 1.259 24 H -0.237 1.237 25 C -0.164 4.164 26 C -0.168 4.168 27 C -0.171 4.171 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.027 0.973 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.040 0.960 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.417 0.583 45 H 0.114 0.886 46 H 0.114 0.886 47 H 0.277 0.723 48 H 0.112 0.888 49 H 0.094 0.906 50 H 0.109 0.891 51 H 0.102 0.898 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.672 34.252 5.006 35.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.018 4.018 3 O -0.307 6.307 4 C 0.070 3.930 5 H 0.075 0.925 6 C -0.086 4.086 7 N -0.267 5.267 8 C -0.125 4.125 9 C -0.073 4.073 10 C -0.151 4.151 11 C -0.001 4.001 12 N -0.365 5.365 13 C 0.319 3.681 14 O -0.443 6.443 15 C -0.262 4.262 16 S 0.049 5.951 17 C -0.677 4.677 18 H 0.081 0.919 19 C -0.160 4.160 20 N -0.554 5.554 21 Si 0.736 3.264 22 H -0.187 1.187 23 H -0.184 1.184 24 H -0.161 1.161 25 C -0.183 4.183 26 C -0.205 4.205 27 C -0.209 4.209 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.254 0.746 45 H 0.132 0.868 46 H 0.132 0.868 47 H 0.086 0.914 48 H 0.130 0.870 49 H 0.113 0.887 50 H 0.128 0.872 51 H 0.121 0.879 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.784 34.157 6.298 35.211 hybrid contribution -0.022 -0.759 -1.067 1.310 sum -5.806 33.398 5.230 34.300 Atomic orbital electron populations 1.21732 0.93831 1.02647 1.02307 1.22608 0.95340 0.83399 1.00472 1.87849 1.21188 1.27263 1.94423 1.21587 0.81648 0.96051 0.93748 0.92456 1.22586 0.99141 0.92294 0.94562 1.61942 1.54289 1.06484 1.03980 1.22459 0.99623 1.02818 0.87607 1.22053 0.94648 0.90695 0.99866 1.21654 0.99956 0.91931 1.01525 1.21309 0.98990 0.82106 0.97659 1.45722 1.37130 1.06451 1.47217 1.19967 0.81735 0.85331 0.81033 1.90690 1.30916 1.86771 1.35958 1.23277 1.04271 0.93879 1.04816 1.84718 1.47560 1.01811 1.61013 1.22465 1.21254 0.94104 1.29831 0.91896 1.25572 0.99100 0.94605 0.96761 1.70017 1.42706 1.00481 1.42216 0.85864 0.80385 0.80452 0.79651 1.18697 1.18352 1.16099 1.22331 1.05580 0.99368 0.90981 1.23098 0.92295 1.03786 1.01348 1.22867 0.97384 1.03523 0.97078 0.92341 0.90272 0.92679 0.91429 0.94569 0.90047 0.93119 0.95398 0.90472 0.91104 0.94191 0.90853 0.89820 0.89957 0.92413 0.92309 0.74556 0.86780 0.86759 0.91379 0.86980 0.88744 0.87242 0.87924 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 10.28 71.98 0.74 -1.26 16 2 C 0.06 0.89 6.36 71.98 0.46 1.35 16 3 O -0.39 -6.76 9.93 -148.98 -1.48 -8.24 16 4 C 0.13 1.77 2.45 30.60 0.07 1.84 16 5 H 0.06 0.82 5.75 -2.39 -0.01 0.81 16 6 C 0.04 0.52 4.64 86.31 0.40 0.92 16 7 N -0.54 -6.67 3.28 -922.43 -3.02 -9.69 16 8 C 0.02 0.24 9.27 127.69 1.18 1.42 16 9 C 0.06 0.68 4.80 86.30 0.41 1.10 16 10 C -0.11 -1.37 5.25 30.60 0.16 -1.21 16 11 C 0.12 2.33 5.67 86.38 0.49 2.82 16 12 N -0.71 -15.74 5.56 -463.04 -2.57 -18.31 16 13 C 0.53 17.89 7.85 87.66 0.69 18.57 16 14 O -0.56 -23.87 15.86 -3.04 -0.05 -23.92 16 15 C -0.11 -4.11 6.16 71.24 0.44 -3.67 16 16 S -0.18 -8.93 18.55 -56.49 -1.05 -9.98 16 17 C -0.53 -30.68 10.04 67.96 0.68 -30.00 16 18 H 0.06 3.84 8.03 -2.91 -0.02 3.81 16 19 C 0.05 2.64 5.50 84.86 0.47 3.11 16 20 N -0.92 -55.64 13.97 21.65 0.30 -55.34 16 21 Si 0.91 44.93 27.74 68.60 1.90 46.83 16 22 H -0.26 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.24 -11.63 6.74 99.48 0.67 -10.96 16 25 C -0.16 -2.00 5.35 -10.80 -0.06 -2.05 16 26 C -0.17 -1.73 10.18 30.62 0.31 -1.42 16 27 C -0.17 -2.05 10.22 30.62 0.31 -1.74 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 1.04 6.88 -2.39 -0.02 1.02 16 32 H 0.04 0.55 7.97 -2.38 -0.02 0.53 16 33 H 0.08 1.04 7.86 -2.39 -0.02 1.02 16 34 H 0.05 0.58 8.04 -2.39 -0.02 0.56 16 35 H 0.03 0.29 8.13 -2.39 -0.02 0.27 16 36 H 0.08 0.74 6.56 -2.39 -0.02 0.72 16 37 H 0.07 0.71 7.95 -2.39 -0.02 0.69 16 38 H 0.04 0.50 8.11 -2.39 -0.02 0.49 16 39 H 0.07 0.94 6.36 -2.39 -0.02 0.93 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.08 0.88 6.59 -2.39 -0.02 0.87 16 42 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.42 6.49 8.47 -92.72 -0.79 5.71 16 45 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 46 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 47 H 0.28 15.54 8.31 -92.72 -0.77 14.77 16 48 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.09 0.98 8.07 -2.39 -0.02 0.96 16 50 H 0.11 0.86 8.14 -2.39 -0.02 0.85 16 51 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 52 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -72.96 430.62 0.86 -72.10 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.06 Total: 16.78 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: 6.76 Total: -10.23 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -5.30 Total: -83.34 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -1.53 Total: -32.16 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.90 Total: 46.83 kcal Atomic # 16 Polarization: -8.93 SS G_CDS: -1.05 Total: -9.98 kcal Total: -72.96 0.86 -72.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234154187.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.149 kcal (2) G-P(sol) polarization free energy of solvation -72.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds