Wall clock time and date at job start Wed Apr 1 2020 02:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46505 * 109.46934 * 2 1 4 4 C 1.34779 * 119.99758 * 269.99899 * 3 2 1 5 5 O 1.21282 * 119.99693 * 180.02562 * 4 3 2 6 6 C 1.50703 * 120.00056 * 0.02562 * 4 3 2 7 7 S 1.80997 * 109.46979 * 180.02562 * 6 4 3 8 8 C 1.76199 * 99.99975 * 180.02562 * 7 6 4 9 9 H 1.07997 * 119.99623 * 359.97438 * 8 7 6 10 10 C 1.38795 * 120.00031 * 180.02562 * 8 7 6 11 11 N 1.31629 * 120.00028 * 179.97438 * 10 8 7 12 12 Si 1.86803 * 120.00074 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.47052 * 90.00212 * 12 10 8 14 14 H 1.48498 * 109.47263 * 210.00068 * 12 10 8 15 15 H 1.48498 * 109.47446 * 330.00508 * 12 10 8 16 16 C 1.46497 * 119.99941 * 89.99876 * 3 2 1 17 17 H 1.08997 * 110.88060 * 2.39384 * 16 3 2 18 18 C 1.55135 * 110.99042 * 238.54545 * 16 3 2 19 19 C 1.54322 * 103.02006 * 206.22045 * 18 16 3 20 20 N 1.47439 * 107.23490 * 22.28319 * 19 18 16 21 21 C 1.46901 * 110.99961 * 123.25626 * 20 19 18 22 22 C 1.53000 * 109.46769 * 69.87863 * 21 20 19 23 23 O 1.42899 * 109.47405 * 64.99669 * 22 21 20 24 24 C 1.42901 * 113.99649 * 179.97438 * 23 22 21 25 25 C 1.52998 * 109.46808 * 90.00772 * 24 23 22 26 26 C 1.53008 * 109.46829 * 210.00030 * 24 23 22 27 27 C 1.47853 * 108.56569 * 0.99003 * 20 19 18 28 28 H 1.08998 * 109.46979 * 299.99848 * 1 2 3 29 29 H 1.09001 * 109.47317 * 60.00286 * 1 2 3 30 30 H 1.09000 * 109.46764 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47555 * 239.99726 * 2 1 3 32 32 H 1.09001 * 109.47317 * 119.99714 * 2 1 3 33 33 H 1.08998 * 109.47028 * 299.99576 * 6 4 3 34 34 H 1.08995 * 109.46902 * 60.00269 * 6 4 3 35 35 H 0.97006 * 119.99879 * 179.97438 * 11 10 8 36 36 H 1.09003 * 110.71015 * 87.83642 * 18 16 3 37 37 H 1.09004 * 110.70681 * 324.59958 * 18 16 3 38 38 H 1.09003 * 109.88473 * 262.87599 * 19 18 16 39 39 H 1.08997 * 109.88802 * 141.69469 * 19 18 16 40 40 H 1.09002 * 109.47401 * 309.87571 * 21 20 19 41 41 H 1.09001 * 109.46874 * 189.87583 * 21 20 19 42 42 H 1.09002 * 109.46642 * 184.99944 * 22 21 20 43 43 H 1.09002 * 109.47069 * 304.99474 * 22 21 20 44 44 H 1.08998 * 109.47440 * 329.99889 * 24 23 22 45 45 H 1.09003 * 109.47203 * 299.99168 * 25 24 23 46 46 H 1.08998 * 109.47841 * 59.99362 * 25 24 23 47 47 H 1.09004 * 109.47102 * 179.97438 * 25 24 23 48 48 H 1.08998 * 109.46829 * 60.00137 * 26 24 23 49 49 H 1.08996 * 109.46700 * 180.02562 * 26 24 23 50 50 H 1.08998 * 109.47256 * 300.00615 * 26 24 23 51 51 H 1.09002 * 110.36766 * 94.73414 * 27 20 19 52 52 H 1.08997 * 110.37443 * 217.07382 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2429 2.0166 -1.1672 5 8 2.6476 3.1599 -1.1672 6 6 1.9912 1.3063 -2.4724 7 16 2.3841 2.4149 -3.8481 8 6 2.0092 1.3594 -5.2082 9 1 1.6535 0.3553 -5.0304 10 6 2.1721 1.8180 -6.5081 11 7 1.8926 1.0293 -7.5241 12 14 2.7881 3.5546 -6.8155 13 1 4.2709 3.5467 -6.8968 14 1 2.2251 4.0606 -8.0930 15 1 2.3582 4.4369 -5.7011 16 6 2.2624 2.0719 1.2687 17 1 2.0735 1.4100 2.1139 18 6 1.4082 3.3628 1.3721 19 6 2.2329 4.2497 2.3286 20 7 3.6254 3.7676 2.2799 21 6 4.5436 4.8483 1.8967 22 6 4.6383 5.8649 3.0362 23 8 5.2368 5.2470 4.1773 24 6 5.3732 6.1156 5.3039 25 6 4.1174 6.0243 6.1730 26 6 6.5938 5.6968 6.1259 27 6 3.7011 2.6435 1.3224 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.6211 0.4187 -2.5303 34 1 0.9431 1.0126 -2.5299 35 1 2.0061 1.3500 -8.4326 36 1 0.4288 3.1439 1.7976 37 1 1.3082 3.8379 0.3961 38 1 1.8450 4.1610 3.3434 39 1 2.1885 5.2886 2.0018 40 1 4.1697 5.3418 0.9996 41 1 5.5313 4.4324 1.6977 42 1 5.2486 6.7105 2.7189 43 1 3.6390 6.2149 3.2949 44 1 5.5023 7.1413 4.9584 45 1 3.2477 6.3227 5.5875 46 1 3.9882 4.9986 6.5185 47 1 4.2215 6.6865 7.0326 48 1 7.4885 5.7617 5.5067 49 1 6.6975 6.3589 6.9854 50 1 6.4647 4.6710 6.4713 51 1 4.0037 3.0028 0.3387 52 1 4.3975 1.8856 1.6812 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267781079.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:32 Heat of formation + Delta-G solvation = -77.716199 kcal Electronic energy + Delta-G solvation = -28844.197422 eV Core-core repulsion = 24970.161955 eV Total energy + Delta-G solvation = -3874.035466 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.42657 -38.79652 -37.75769 -35.77566 -33.54384 -32.45728 -31.92618 -30.19926 -29.60187 -28.71362 -27.49408 -26.85325 -25.61359 -23.42464 -22.97643 -21.84953 -21.53078 -20.48713 -18.91604 -17.63091 -17.09909 -16.76546 -16.67970 -15.88305 -15.36044 -15.19678 -15.11744 -14.97200 -14.55341 -13.96576 -13.87801 -13.66507 -13.58561 -13.55294 -13.36452 -13.10047 -12.96745 -12.82393 -12.58689 -12.46189 -12.34588 -12.09769 -12.02228 -11.75673 -11.55522 -11.39693 -11.33197 -11.27991 -11.22404 -11.04288 -11.02095 -10.84263 -10.70231 -10.62045 -9.87218 -9.67845 -9.30838 -9.02340 -8.59668 -8.51054 -8.26271 -6.93805 -6.30728 -4.02436 2.66557 2.88197 3.13110 3.30915 3.47751 3.50938 3.55538 4.01859 4.30717 4.49722 4.56938 4.63561 4.69943 4.77401 4.81054 4.91223 5.01641 5.04275 5.04804 5.08154 5.12185 5.18716 5.21804 5.29865 5.31140 5.32375 5.39077 5.41536 5.52211 5.56171 5.61400 5.64398 5.68542 5.69787 5.77379 5.81183 5.84787 5.91398 5.93670 5.95569 5.99251 6.05114 6.15106 6.19094 6.66062 6.94225 6.98783 7.19871 7.45501 7.92314 8.39819 8.41811 9.15451 10.78467 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014801 B = 0.002450 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.357581 B =11427.279626 C =12801.409106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 N -0.611 5.611 4 C 0.534 3.466 5 O -0.515 6.515 6 C -0.122 4.122 7 S -0.144 6.144 8 C -0.520 4.520 9 H 0.088 0.912 10 C 0.095 3.905 11 N -0.880 5.880 12 Si 0.857 3.143 13 H -0.267 1.267 14 H -0.274 1.274 15 H -0.236 1.236 16 C 0.145 3.855 17 H 0.098 0.902 18 C -0.156 4.156 19 C 0.048 3.952 20 N -0.513 5.513 21 C 0.052 3.948 22 C 0.070 3.930 23 O -0.365 6.365 24 C 0.078 3.922 25 C -0.172 4.172 26 C -0.148 4.148 27 C 0.024 3.976 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.271 0.729 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.049 0.951 43 H 0.047 0.953 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.065 0.935 50 H 0.063 0.937 51 H 0.079 0.921 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.092 5.012 26.778 27.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.018 4.018 3 N -0.345 5.345 4 C 0.323 3.677 5 O -0.390 6.390 6 C -0.273 4.273 7 S 0.083 5.917 8 C -0.668 4.668 9 H 0.106 0.894 10 C -0.113 4.113 11 N -0.516 5.516 12 Si 0.682 3.318 13 H -0.192 1.192 14 H -0.200 1.200 15 H -0.160 1.160 16 C 0.041 3.959 17 H 0.116 0.884 18 C -0.195 4.195 19 C -0.080 4.080 20 N -0.237 5.237 21 C -0.076 4.076 22 C -0.007 4.007 23 O -0.284 6.284 24 C 0.020 3.980 25 C -0.230 4.230 26 C -0.206 4.206 27 C -0.104 4.104 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.083 0.917 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.084 0.916 50 H 0.082 0.918 51 H 0.097 0.903 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.903 6.307 27.071 27.947 hybrid contribution -0.707 -0.252 -1.227 1.438 sum 2.196 6.056 25.844 26.635 Atomic orbital electron populations 1.22225 0.95815 1.02325 1.02698 1.21613 0.94608 0.82111 1.03462 1.47914 1.67122 1.14334 1.05155 1.20256 0.76483 0.86470 0.84523 1.90622 1.43986 1.17486 1.86876 1.23362 1.05335 1.03311 0.95265 1.84743 1.88056 1.21375 0.97573 1.22298 1.51667 1.01935 0.90872 0.89421 1.24713 0.93812 0.97909 0.94897 1.69939 1.46591 1.36229 0.98871 0.86733 0.80247 0.85059 0.79780 1.19237 1.19967 1.15998 1.22056 0.94784 0.93642 0.85459 0.88380 1.23174 0.98510 0.96229 1.01579 1.22742 0.88390 0.97773 0.99138 1.63593 1.05021 1.07675 1.47459 1.22284 0.98121 0.92463 0.94740 1.22563 0.96827 0.94775 0.86578 1.88049 1.81538 1.37614 1.21195 1.22043 0.95144 0.93475 0.87312 1.22266 0.98116 1.02748 0.99825 1.21842 0.97018 1.02401 0.99294 1.23446 0.96592 0.93696 0.96690 0.92481 0.91950 0.91453 0.89777 0.90386 0.88653 0.88563 0.91947 0.91196 0.89272 0.90875 0.92843 0.92511 0.90071 0.93314 0.93512 0.92802 0.92656 0.91688 0.92133 0.92134 0.91602 0.91755 0.90281 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 10.24 37.16 0.38 -1.26 16 2 C 0.11 1.07 5.92 -4.04 -0.02 1.05 16 3 N -0.61 -8.01 2.56 -163.68 -0.42 -8.43 16 4 C 0.53 9.26 6.97 -10.98 -0.08 9.18 16 5 O -0.51 -10.34 11.90 5.56 0.07 -10.27 16 6 C -0.12 -2.34 4.71 36.01 0.17 -2.17 16 7 S -0.14 -3.59 18.55 -107.50 -1.99 -5.59 16 8 C -0.52 -14.85 10.04 30.94 0.31 -14.54 16 9 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 10 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 11 N -0.88 -26.40 13.97 55.49 0.78 -25.63 16 12 Si 0.86 21.69 27.74 -169.99 -4.71 16.98 16 13 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 16 C 0.15 1.74 3.54 -65.79 -0.23 1.51 16 17 H 0.10 0.99 7.87 -51.93 -0.41 0.58 16 18 C -0.16 -1.90 6.31 -24.91 -0.16 -2.06 16 19 C 0.05 0.54 6.13 -2.84 -0.02 0.53 16 20 N -0.51 -6.35 5.11 -231.24 -1.18 -7.54 16 21 C 0.05 0.62 4.92 -3.82 -0.02 0.60 16 22 C 0.07 0.71 5.85 37.16 0.22 0.93 16 23 O -0.36 -4.10 9.93 -35.23 -0.35 -4.45 16 24 C 0.08 0.66 3.34 -26.73 -0.09 0.58 16 25 C -0.17 -1.31 9.53 37.16 0.35 -0.95 16 26 C -0.15 -1.08 9.56 37.16 0.36 -0.73 16 27 C 0.02 0.32 6.04 -2.29 -0.01 0.31 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.71 7.22 -51.93 -0.37 0.34 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.88 6.44 -51.93 -0.33 0.55 16 32 H 0.08 0.62 7.94 -51.93 -0.41 0.21 16 33 H 0.10 1.72 7.40 -51.92 -0.38 1.34 16 34 H 0.10 1.75 7.18 -51.92 -0.37 1.38 16 35 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 1.38 6.12 -51.93 -0.32 1.06 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.05 0.61 6.94 -51.93 -0.36 0.25 16 40 H 0.06 0.72 7.96 -51.93 -0.41 0.31 16 41 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16 42 H 0.05 0.44 8.08 -51.93 -0.42 0.02 16 43 H 0.05 0.46 6.78 -51.93 -0.35 0.10 16 44 H 0.05 0.41 7.79 -51.93 -0.40 0.01 16 45 H 0.05 0.43 7.87 -51.93 -0.41 0.02 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.08 1.28 5.33 -51.93 -0.28 1.01 16 52 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 416.09 15.07 6.27 6.27 Total: -1.00 -32.58 416.09 -9.95 -42.53 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -9.46 Total: 0.48 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 1.06 Total: -4.36 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: -0.82 Total: -41.59 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.28 Total: -14.72 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.98 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.58 -9.95 -42.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267781079.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.188 kcal (2) G-P(sol) polarization free energy of solvation -32.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds