Wall clock time and date at job start Wed Apr 1 2020 02:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46505 * 109.46934 * 2 1 4 4 C 1.34779 * 119.99758 * 269.99899 * 3 2 1 5 5 O 1.21282 * 119.99693 * 180.02562 * 4 3 2 6 6 C 1.50703 * 120.00056 * 0.02562 * 4 3 2 7 7 S 1.80997 * 109.46979 * 180.02562 * 6 4 3 8 8 C 1.76199 * 99.99975 * 180.02562 * 7 6 4 9 9 H 1.07997 * 119.99623 * 359.97438 * 8 7 6 10 10 C 1.38795 * 120.00031 * 180.02562 * 8 7 6 11 11 N 1.31629 * 120.00028 * 179.97438 * 10 8 7 12 12 Si 1.86803 * 120.00074 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.47052 * 90.00212 * 12 10 8 14 14 H 1.48498 * 109.47263 * 210.00068 * 12 10 8 15 15 H 1.48498 * 109.47446 * 330.00508 * 12 10 8 16 16 C 1.46497 * 119.99941 * 89.99876 * 3 2 1 17 17 H 1.08997 * 110.88060 * 2.39384 * 16 3 2 18 18 C 1.55135 * 110.99042 * 238.54545 * 16 3 2 19 19 C 1.54322 * 103.02006 * 206.22045 * 18 16 3 20 20 N 1.47439 * 107.23490 * 22.28319 * 19 18 16 21 21 C 1.46901 * 110.99961 * 123.25626 * 20 19 18 22 22 C 1.53000 * 109.46769 * 69.87863 * 21 20 19 23 23 O 1.42899 * 109.47405 * 64.99669 * 22 21 20 24 24 C 1.42901 * 113.99649 * 179.97438 * 23 22 21 25 25 C 1.52998 * 109.46808 * 90.00772 * 24 23 22 26 26 C 1.53008 * 109.46829 * 210.00030 * 24 23 22 27 27 C 1.47853 * 108.56569 * 0.99003 * 20 19 18 28 28 H 1.08998 * 109.46979 * 299.99848 * 1 2 3 29 29 H 1.09001 * 109.47317 * 60.00286 * 1 2 3 30 30 H 1.09000 * 109.46764 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47555 * 239.99726 * 2 1 3 32 32 H 1.09001 * 109.47317 * 119.99714 * 2 1 3 33 33 H 1.08998 * 109.47028 * 299.99576 * 6 4 3 34 34 H 1.08995 * 109.46902 * 60.00269 * 6 4 3 35 35 H 0.97006 * 119.99879 * 179.97438 * 11 10 8 36 36 H 1.09003 * 110.71015 * 87.83642 * 18 16 3 37 37 H 1.09004 * 110.70681 * 324.59958 * 18 16 3 38 38 H 1.09003 * 109.88473 * 262.87599 * 19 18 16 39 39 H 1.08997 * 109.88802 * 141.69469 * 19 18 16 40 40 H 1.09002 * 109.47401 * 309.87571 * 21 20 19 41 41 H 1.09001 * 109.46874 * 189.87583 * 21 20 19 42 42 H 1.09002 * 109.46642 * 184.99944 * 22 21 20 43 43 H 1.09002 * 109.47069 * 304.99474 * 22 21 20 44 44 H 1.08998 * 109.47440 * 329.99889 * 24 23 22 45 45 H 1.09003 * 109.47203 * 299.99168 * 25 24 23 46 46 H 1.08998 * 109.47841 * 59.99362 * 25 24 23 47 47 H 1.09004 * 109.47102 * 179.97438 * 25 24 23 48 48 H 1.08998 * 109.46829 * 60.00137 * 26 24 23 49 49 H 1.08996 * 109.46700 * 180.02562 * 26 24 23 50 50 H 1.08998 * 109.47256 * 300.00615 * 26 24 23 51 51 H 1.09002 * 110.36766 * 94.73414 * 27 20 19 52 52 H 1.08997 * 110.37443 * 217.07382 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2429 2.0166 -1.1672 5 8 2.6476 3.1599 -1.1672 6 6 1.9912 1.3063 -2.4724 7 16 2.3841 2.4149 -3.8481 8 6 2.0092 1.3594 -5.2082 9 1 1.6535 0.3553 -5.0304 10 6 2.1721 1.8180 -6.5081 11 7 1.8926 1.0293 -7.5241 12 14 2.7881 3.5546 -6.8155 13 1 4.2709 3.5467 -6.8968 14 1 2.2251 4.0606 -8.0930 15 1 2.3582 4.4369 -5.7011 16 6 2.2624 2.0719 1.2687 17 1 2.0735 1.4100 2.1139 18 6 1.4082 3.3628 1.3721 19 6 2.2329 4.2497 2.3286 20 7 3.6254 3.7676 2.2799 21 6 4.5436 4.8483 1.8967 22 6 4.6383 5.8649 3.0362 23 8 5.2368 5.2470 4.1773 24 6 5.3732 6.1156 5.3039 25 6 4.1174 6.0243 6.1730 26 6 6.5938 5.6968 6.1259 27 6 3.7011 2.6435 1.3224 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.6211 0.4187 -2.5303 34 1 0.9431 1.0126 -2.5299 35 1 2.0061 1.3500 -8.4326 36 1 0.4288 3.1439 1.7976 37 1 1.3082 3.8379 0.3961 38 1 1.8450 4.1610 3.3434 39 1 2.1885 5.2886 2.0018 40 1 4.1697 5.3418 0.9996 41 1 5.5313 4.4324 1.6977 42 1 5.2486 6.7105 2.7189 43 1 3.6390 6.2149 3.2949 44 1 5.5023 7.1413 4.9584 45 1 3.2477 6.3227 5.5875 46 1 3.9882 4.9986 6.5185 47 1 4.2215 6.6865 7.0326 48 1 7.4885 5.7617 5.5067 49 1 6.6975 6.3589 6.9854 50 1 6.4647 4.6710 6.4713 51 1 4.0037 3.0028 0.3387 52 1 4.3975 1.8856 1.6812 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267781079.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:31 Heat of formation + Delta-G solvation = -98.750322 kcal Electronic energy + Delta-G solvation = -28845.109530 eV Core-core repulsion = 24970.161955 eV Total energy + Delta-G solvation = -3874.947574 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.58732 -39.70558 -38.71385 -36.91467 -34.68966 -34.33071 -32.77788 -31.20734 -30.91006 -29.68490 -28.13155 -27.97817 -27.69386 -24.37902 -23.90595 -22.89293 -22.17053 -21.43781 -20.43591 -19.35184 -18.11904 -17.81742 -17.70188 -17.13485 -16.83083 -16.53229 -16.29979 -16.00154 -15.66529 -15.30083 -14.96947 -14.81823 -14.72484 -14.59701 -14.53291 -14.28215 -14.20632 -13.89445 -13.41771 -13.35463 -13.20746 -13.11170 -13.04754 -12.96257 -12.86812 -12.66931 -12.60910 -12.39276 -12.33918 -12.21113 -12.04752 -11.91907 -11.89036 -11.69151 -11.47965 -11.19048 -10.65125 -10.54212 -10.41888 -9.70962 -9.27537 -9.01245 -8.53266 -6.23881 0.95958 1.28864 1.43292 1.51119 1.52157 2.01046 2.22596 2.66203 2.77446 2.84811 3.05012 3.48007 3.63915 3.75082 3.96966 3.98752 4.11666 4.12247 4.15080 4.22612 4.24585 4.28332 4.34540 4.38122 4.41632 4.43212 4.49465 4.53697 4.58338 4.71115 4.78336 4.82510 4.83792 4.86803 4.94368 4.95952 4.98105 4.98877 5.00342 5.05638 5.20766 5.33282 5.35766 5.37480 5.63802 5.69024 5.96206 6.02925 6.09540 6.27818 6.45021 6.91821 7.10537 8.59096 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014801 B = 0.002450 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.357581 B =11427.279626 C =12801.409106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.097 3.903 3 N -0.597 5.597 4 C 0.535 3.465 5 O -0.547 6.547 6 C -0.107 4.107 7 S -0.174 6.174 8 C -0.528 4.528 9 H 0.061 0.939 10 C 0.045 3.955 11 N -0.916 5.916 12 Si 0.914 3.086 13 H -0.263 1.263 14 H -0.259 1.259 15 H -0.238 1.238 16 C 0.147 3.853 17 H 0.132 0.868 18 C -0.151 4.151 19 C 0.051 3.949 20 N -0.513 5.513 21 C 0.053 3.947 22 C 0.076 3.924 23 O -0.386 6.386 24 C 0.070 3.930 25 C -0.168 4.168 26 C -0.146 4.146 27 C 0.026 3.974 28 H 0.066 0.934 29 H 0.037 0.963 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.277 0.723 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.091 0.909 39 H 0.049 0.951 40 H 0.042 0.958 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.051 0.949 46 H 0.055 0.945 47 H 0.078 0.922 48 H 0.055 0.945 49 H 0.086 0.914 50 H 0.056 0.944 51 H 0.045 0.955 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.864 5.262 29.594 30.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.024 4.024 3 N -0.329 5.329 4 C 0.322 3.678 5 O -0.425 6.425 6 C -0.258 4.258 7 S 0.052 5.948 8 C -0.675 4.675 9 H 0.079 0.921 10 C -0.160 4.160 11 N -0.553 5.553 12 Si 0.737 3.263 13 H -0.188 1.188 14 H -0.183 1.183 15 H -0.162 1.162 16 C 0.043 3.957 17 H 0.150 0.850 18 C -0.190 4.190 19 C -0.077 4.077 20 N -0.237 5.237 21 C -0.075 4.075 22 C -0.001 4.001 23 O -0.306 6.306 24 C 0.013 3.987 25 C -0.225 4.225 26 C -0.203 4.203 27 C -0.103 4.103 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.131 0.869 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.072 0.928 38 H 0.110 0.890 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.097 0.903 48 H 0.074 0.926 49 H 0.105 0.895 50 H 0.075 0.925 51 H 0.063 0.937 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.659 6.526 29.917 30.735 hybrid contribution -0.655 -0.434 -1.963 2.115 sum 2.004 6.092 27.953 28.680 Atomic orbital electron populations 1.22185 0.95036 1.03434 1.01942 1.21925 0.95198 0.80309 1.05006 1.47899 1.65539 1.15291 1.04211 1.19915 0.76808 0.86015 0.85039 1.90626 1.45784 1.18816 1.87318 1.23330 1.06105 1.02315 0.94034 1.84643 1.88330 1.22940 0.98846 1.22437 1.51142 1.01429 0.92512 0.92073 1.25557 0.94041 1.01614 0.94790 1.70016 1.47734 1.38089 0.99508 0.85867 0.79879 0.80552 0.80051 1.18759 1.18315 1.16172 1.22262 0.93839 0.94150 0.85409 0.85028 1.23099 0.99796 0.96127 1.00018 1.22778 0.87687 0.97410 0.99815 1.63676 1.05638 1.07648 1.46755 1.22249 0.97486 0.92681 0.95108 1.22482 0.97422 0.94269 0.85956 1.88012 1.81728 1.38898 1.21982 1.22269 0.96056 0.93630 0.86783 1.22230 0.97459 1.02634 1.00204 1.21848 0.96293 1.02437 0.99740 1.23373 0.97572 0.94180 0.95162 0.91501 0.94393 0.89449 0.90225 0.86947 0.87513 0.87586 0.91372 0.89063 0.92818 0.89034 0.93231 0.94018 0.91032 0.92149 0.92917 0.91844 0.92999 0.92551 0.90328 0.92612 0.89549 0.92528 0.93655 0.90030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 10.24 71.98 0.74 -2.02 16 2 C 0.10 1.71 5.92 86.38 0.51 2.22 16 3 N -0.60 -14.63 2.56 -790.16 -2.02 -16.65 16 4 C 0.53 18.40 6.97 87.66 0.61 19.01 16 5 O -0.55 -22.42 11.90 -3.04 -0.04 -22.46 16 6 C -0.11 -4.10 4.71 71.24 0.34 -3.77 16 7 S -0.17 -8.82 18.55 -56.49 -1.05 -9.87 16 8 C -0.53 -30.81 10.04 67.95 0.68 -30.12 16 9 H 0.06 3.77 8.03 -2.91 -0.02 3.75 16 10 C 0.05 2.68 5.50 84.86 0.47 3.14 16 11 N -0.92 -55.79 13.97 21.65 0.30 -55.49 16 12 Si 0.91 45.20 27.74 68.60 1.90 47.11 16 13 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 14 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 15 H -0.24 -11.74 6.74 99.48 0.67 -11.07 16 16 C 0.15 3.20 3.54 46.38 0.16 3.36 16 17 H 0.13 2.08 7.87 -2.39 -0.02 2.06 16 18 C -0.15 -3.45 6.31 31.77 0.20 -3.25 16 19 C 0.05 1.08 6.13 86.65 0.53 1.61 16 20 N -0.51 -12.22 5.11 -885.51 -4.52 -16.75 16 21 C 0.05 1.28 4.92 86.30 0.42 1.70 16 22 C 0.08 1.48 5.85 71.98 0.42 1.91 16 23 O -0.39 -8.25 9.93 -148.98 -1.48 -9.73 16 24 C 0.07 1.07 3.34 30.60 0.10 1.18 16 25 C -0.17 -2.22 9.53 71.98 0.69 -1.53 16 26 C -0.15 -1.90 9.56 71.98 0.69 -1.21 16 27 C 0.03 0.66 6.04 86.77 0.52 1.19 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.04 0.81 7.22 -2.39 -0.02 0.79 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.50 6.44 -2.39 -0.02 1.49 16 32 H 0.11 1.29 7.94 -2.39 -0.02 1.27 16 33 H 0.11 3.83 7.40 -2.40 -0.02 3.82 16 34 H 0.11 3.85 7.18 -2.40 -0.02 3.83 16 35 H 0.28 15.60 8.31 -92.70 -0.77 14.83 16 36 H 0.09 1.67 8.14 -2.39 -0.02 1.66 16 37 H 0.05 1.65 6.12 -2.39 -0.01 1.64 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.05 1.09 6.94 -2.39 -0.02 1.07 16 40 H 0.04 1.11 7.96 -2.39 -0.02 1.09 16 41 H 0.07 1.81 8.07 -2.39 -0.02 1.79 16 42 H 0.06 1.03 8.08 -2.39 -0.02 1.01 16 43 H 0.05 0.96 6.78 -2.39 -0.02 0.94 16 44 H 0.06 0.84 7.79 -2.39 -0.02 0.82 16 45 H 0.05 0.71 7.87 -2.39 -0.02 0.69 16 46 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.05 1.50 5.33 -2.39 -0.01 1.49 16 52 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -72.32 416.09 1.02 -71.30 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.84 Total: 19.13 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 7.09 Total: -6.58 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -6.24 Total: -88.89 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -1.52 Total: -32.19 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.90 Total: 47.11 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.05 Total: -9.87 kcal Total: -72.32 1.02 -71.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267781079.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.454 kcal (2) G-P(sol) polarization free energy of solvation -72.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds