Wall clock time and date at job start Wed Apr 1 2020 02:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.46962 * 2 1 4 4 C 1.34776 * 120.00502 * 275.13764 * 3 2 1 5 5 O 1.21281 * 120.00865 * 185.19289 * 4 3 2 6 6 C 1.50708 * 119.99851 * 5.19028 * 4 3 2 7 7 C 1.50702 * 109.47237 * 180.02562 * 6 4 3 8 8 C 1.38291 * 120.11337 * 269.72156 * 7 6 4 9 9 C 1.37925 * 120.34700 * 179.97438 * 8 7 6 10 10 C 1.39293 * 120.24101 * 0.55154 * 9 8 7 11 11 C 1.38879 * 118.87493 * 359.41025 * 10 9 8 12 12 C 1.37741 * 120.78537 * 0.42333 * 11 10 9 13 13 C 1.51641 * 107.03620 * 180.67909 * 11 10 9 14 14 C 1.54707 * 101.92308 * 15.47819 * 13 11 10 15 15 O 1.36138 * 129.88290 * 179.10031 * 10 9 8 16 16 C 1.46505 * 120.00105 * 95.13661 * 3 2 1 17 17 H 1.08996 * 110.88594 * 190.37947 * 16 3 2 18 18 C 1.55151 * 111.00513 * 66.49260 * 16 3 2 19 19 C 1.54320 * 102.94501 * 277.43295 * 18 16 3 20 20 N 1.47020 * 107.26909 * 337.80569 * 19 18 16 21 21 C 1.36938 * 125.64791 * 178.98833 * 20 19 18 22 22 H 1.08000 * 120.00015 * 174.92863 * 21 20 19 23 23 C 1.38813 * 120.00182 * 354.92829 * 21 20 19 24 24 N 1.31615 * 119.99719 * 5.71764 * 23 21 20 25 25 Si 1.86795 * 120.00013 * 185.72244 * 23 21 20 26 26 H 1.48501 * 109.47590 * 94.99728 * 25 23 21 27 27 H 1.48503 * 109.47057 * 214.99420 * 25 23 21 28 28 H 1.48504 * 109.47261 * 334.99230 * 25 23 21 29 29 C 1.47420 * 108.70490 * 358.94104 * 20 19 18 30 30 H 1.09001 * 109.47208 * 59.99926 * 1 2 3 31 31 H 1.09000 * 109.46703 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46947 * 299.99765 * 1 2 3 33 33 H 1.09004 * 109.47281 * 240.00590 * 2 1 3 34 34 H 1.08997 * 109.47691 * 119.99994 * 2 1 3 35 35 H 1.08997 * 109.47078 * 300.00451 * 6 4 3 36 36 H 1.08999 * 109.46896 * 59.99950 * 6 4 3 37 37 H 1.07994 * 119.82615 * 0.18041 * 8 7 6 38 38 H 1.08003 * 119.87898 * 180.28034 * 9 8 7 39 39 H 1.07999 * 120.01092 * 179.76780 * 12 11 10 40 40 H 1.09001 * 110.93636 * 133.63274 * 13 11 10 41 41 H 1.09002 * 110.94235 * 257.28194 * 13 11 10 42 42 H 1.08995 * 110.75298 * 93.01653 * 14 13 11 43 43 H 1.09004 * 110.74799 * 216.36751 * 14 13 11 44 44 H 1.09003 * 110.71961 * 35.79282 * 18 16 3 45 45 H 1.08997 * 110.72229 * 159.06452 * 18 16 3 46 46 H 1.09003 * 109.88316 * 97.21992 * 19 18 16 47 47 H 1.08997 * 109.88503 * 218.23255 * 19 18 16 48 48 H 0.97007 * 120.00196 * 179.97438 * 24 23 21 49 49 H 1.09005 * 110.36990 * 265.28982 * 29 20 19 50 50 H 1.08999 * 110.37018 * 142.96929 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1444 2.0515 -1.1624 5 8 2.6365 3.1599 -1.1732 6 6 1.6740 1.4235 -2.4492 7 6 1.9273 2.3717 -3.5929 8 6 0.9589 3.2870 -3.9628 9 6 1.1858 4.1573 -5.0084 10 6 2.3891 4.1139 -5.7088 11 6 3.3542 3.1910 -5.3273 12 6 3.1269 2.3251 -4.2805 13 6 4.5443 3.3870 -6.2464 14 6 4.2409 4.7690 -6.8719 15 8 2.8097 4.8577 -6.7686 16 6 2.3696 2.0340 1.2637 17 1 2.5373 3.1009 1.1164 18 6 3.6078 1.3605 1.9121 19 6 2.9977 0.1456 2.6424 20 7 1.5753 0.4412 2.8681 21 6 0.6728 -0.3933 3.4716 22 1 -0.3334 -0.0517 3.6646 23 6 1.0511 -1.6784 3.8353 24 7 2.3046 -2.0574 3.7039 25 14 -0.2190 -2.8699 4.5110 26 1 -0.7395 -3.7169 3.4079 27 1 0.4112 -3.7328 5.5423 28 1 -1.3383 -2.1075 5.1202 29 6 1.2818 1.7852 2.3382 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8935 -0.5138 0.8899 35 1 2.2180 0.4947 -2.6203 36 1 0.6068 1.2123 -2.3814 37 1 0.0213 3.3227 -3.4280 38 1 0.4260 4.8721 -5.2881 39 1 3.8847 1.6098 -3.9967 40 1 5.4747 3.4120 -5.6790 41 1 4.5776 2.6113 -7.0115 42 1 4.7193 5.5648 -6.3010 43 1 4.5553 4.7981 -7.9152 44 1 4.3146 1.0363 1.1484 45 1 4.0871 2.0358 2.6209 46 1 3.0974 -0.7468 2.0245 47 1 3.5031 -0.0058 3.5962 48 1 2.5692 -2.9553 3.9584 49 1 1.3544 2.5298 3.1310 50 1 0.2902 1.8066 1.8862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269339967.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:42 Heat of formation + Delta-G solvation = -0.688244 kcal Electronic energy + Delta-G solvation = -30853.956660 eV Core-core repulsion = 26847.817425 eV Total energy + Delta-G solvation = -4006.139235 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.22303 -39.98985 -38.07803 -37.07747 -34.56989 -32.88828 -32.65138 -31.82236 -30.23996 -29.39959 -28.85567 -27.91001 -26.83467 -24.46649 -23.62777 -22.82437 -22.13746 -21.60183 -20.29251 -20.09879 -18.40996 -17.52992 -17.02715 -16.94971 -16.87250 -16.30943 -15.79519 -15.35056 -14.70871 -14.63197 -14.21552 -13.97826 -13.87364 -13.59738 -13.38105 -13.32478 -13.10019 -12.99869 -12.65053 -12.54799 -12.10576 -11.99267 -11.97106 -11.87873 -11.79106 -11.62867 -11.25993 -11.01421 -10.95570 -10.92740 -10.87352 -10.74937 -10.44403 -10.16423 -10.03565 -9.86800 -9.70246 -9.25987 -8.94541 -8.67495 -8.15412 -8.10328 -6.88617 -5.78831 -3.11633 1.20900 1.29070 2.94613 3.07198 3.34262 3.36541 3.41422 3.42833 3.71275 4.20872 4.35682 4.44147 4.71331 4.73174 4.77866 4.92704 5.03751 5.11114 5.25606 5.32223 5.38126 5.41211 5.42695 5.45601 5.50172 5.53311 5.57517 5.65996 5.70650 5.87472 5.90897 5.96648 6.00583 6.15403 6.21453 6.28138 6.30130 6.34353 6.45376 6.48391 6.53308 6.53724 6.63099 6.76075 6.91403 7.07170 7.16859 7.50427 7.53324 7.75836 7.92128 8.17039 8.55209 9.14728 9.74647 10.41092 11.32618 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024650 B = 0.002396 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.618898 B =11683.567039 C =11966.250337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.088 3.912 3 N -0.586 5.586 4 C 0.513 3.487 5 O -0.548 6.548 6 C -0.099 4.099 7 C -0.083 4.083 8 C -0.070 4.070 9 C -0.135 4.135 10 C 0.098 3.902 11 C -0.175 4.175 12 C -0.055 4.055 13 C -0.110 4.110 14 C 0.052 3.948 15 O -0.308 6.308 16 C 0.125 3.875 17 H 0.095 0.905 18 C -0.156 4.156 19 C 0.173 3.827 20 N -0.601 5.601 21 C -0.223 4.223 22 H 0.077 0.923 23 C -0.005 4.005 24 N -0.920 5.920 25 Si 0.907 3.093 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.282 1.282 29 C 0.123 3.877 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.130 0.870 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.104 0.896 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.053 0.947 47 H 0.040 0.960 48 H 0.252 0.748 49 H 0.028 0.972 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.027 8.104 -18.633 20.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.034 4.034 3 N -0.317 5.317 4 C 0.300 3.700 5 O -0.426 6.426 6 C -0.138 4.138 7 C -0.084 4.084 8 C -0.088 4.088 9 C -0.154 4.154 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.073 4.073 13 C -0.147 4.147 14 C -0.023 4.023 15 O -0.223 6.223 16 C 0.021 3.979 17 H 0.113 0.887 18 C -0.195 4.195 19 C 0.049 3.951 20 N -0.328 5.328 21 C -0.352 4.352 22 H 0.095 0.905 23 C -0.202 4.202 24 N -0.568 5.568 25 Si 0.737 3.263 26 H -0.216 1.216 27 H -0.219 1.219 28 H -0.207 1.207 29 C -0.003 4.003 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.148 0.852 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.122 0.878 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.071 0.929 47 H 0.058 0.942 48 H 0.063 0.937 49 H 0.046 0.954 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.167 8.595 -18.684 20.680 hybrid contribution -0.449 -0.887 0.547 1.134 sum 1.718 7.708 -18.137 19.782 Atomic orbital electron populations 1.22184 0.96088 1.02082 1.01462 1.22034 0.94797 0.81716 1.04885 1.47880 1.63866 1.14483 1.05494 1.20456 0.78775 0.85755 0.84982 1.90668 1.44844 1.20334 1.86746 1.20713 1.03986 0.98383 0.90749 1.19206 0.94237 0.98232 0.96731 1.20706 0.99131 0.93696 0.95300 1.20167 0.96067 1.02295 0.96857 1.19523 0.95348 0.91445 0.88392 1.20647 0.97334 0.99575 0.99983 1.20099 0.96271 0.97640 0.93291 1.21772 0.97474 0.97510 0.97900 1.23809 0.79025 0.97013 1.02459 1.86800 1.23000 1.67965 1.44513 1.22206 0.95969 0.96786 0.82980 0.88665 1.23259 0.96798 1.00026 0.99447 1.21225 0.83803 0.92320 0.97741 1.44538 1.06134 1.13259 1.68859 1.18987 0.92173 0.92266 1.31741 0.90548 1.24762 0.96359 0.97392 1.01642 1.69967 1.14470 1.18659 1.53682 0.86177 0.80499 0.81304 0.78274 1.21628 1.21876 1.20735 1.21956 0.96224 0.89097 0.93062 0.94443 0.92010 0.90876 0.92576 0.85182 0.88210 0.87787 0.85255 0.85543 0.85975 0.89094 0.89292 0.90577 0.87774 0.91995 0.91569 0.92941 0.94181 0.93738 0.95414 0.93293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.99 37.16 0.37 -2.10 16 2 C 0.09 1.44 5.04 -4.04 -0.02 1.42 16 3 N -0.59 -9.73 2.52 -163.67 -0.41 -10.14 16 4 C 0.51 8.23 7.62 -10.98 -0.08 8.15 16 5 O -0.55 -10.51 15.47 5.56 0.09 -10.42 16 6 C -0.10 -1.22 4.51 -29.03 -0.13 -1.35 16 7 C -0.08 -1.07 4.38 -104.56 -0.46 -1.53 16 8 C -0.07 -0.86 9.68 -39.68 -0.38 -1.24 16 9 C -0.14 -1.65 10.06 -39.30 -0.40 -2.04 16 10 C 0.10 1.24 7.04 -38.95 -0.27 0.97 16 11 C -0.17 -2.09 6.27 -104.10 -0.65 -2.74 16 12 C -0.05 -0.68 9.70 -39.72 -0.39 -1.07 16 13 C -0.11 -0.94 7.12 -26.52 -0.19 -1.12 16 14 C 0.05 0.42 8.01 38.06 0.30 0.73 16 15 O -0.31 -3.67 11.10 -20.18 -0.22 -3.89 16 16 C 0.12 2.25 3.61 -65.78 -0.24 2.01 16 17 H 0.10 1.73 7.12 -51.93 -0.37 1.36 16 18 C -0.16 -2.89 6.56 -24.90 -0.16 -3.06 16 19 C 0.17 3.89 4.31 -3.07 -0.01 3.87 16 20 N -0.60 -13.77 2.19 -170.08 -0.37 -14.14 16 21 C -0.22 -5.65 10.27 -15.06 -0.15 -5.81 16 22 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 23 C -0.01 -0.13 5.48 -17.43 -0.10 -0.23 16 24 N -0.92 -25.12 10.35 55.49 0.57 -24.55 16 25 Si 0.91 20.90 29.56 -169.99 -5.02 15.88 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 C 0.12 2.42 6.05 -2.53 -0.02 2.40 16 30 H 0.04 0.48 6.32 -51.93 -0.33 0.15 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.29 5.62 -51.93 -0.29 1.00 16 33 H 0.06 0.78 6.70 -51.93 -0.35 0.44 16 34 H 0.13 2.64 3.73 -51.93 -0.19 2.45 16 35 H 0.10 1.08 7.23 -51.93 -0.38 0.70 16 36 H 0.10 1.13 6.30 -51.93 -0.33 0.81 16 37 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 39 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.05 1.28 5.69 -51.93 -0.30 0.98 16 47 H 0.04 1.02 7.63 -51.93 -0.40 0.62 16 48 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 49 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.05 0.95 6.00 -51.93 -0.31 0.63 16 LS Contribution 386.02 15.07 5.82 5.82 Total: -1.00 -30.34 386.02 -9.97 -40.31 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -7.43 Total: 3.88 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -2.98 Total: -2.75 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -0.21 Total: -48.82 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.14 Total: -14.31 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.34 -9.97 -40.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269339967.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.623 kcal (2) G-P(sol) polarization free energy of solvation -30.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds