Wall clock time and date at job start Wed Apr 1 2020 02:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.46962 * 2 1 4 4 C 1.34776 * 120.00502 * 275.13764 * 3 2 1 5 5 O 1.21281 * 120.00865 * 185.19289 * 4 3 2 6 6 C 1.50708 * 119.99851 * 5.19028 * 4 3 2 7 7 C 1.50702 * 109.47237 * 180.02562 * 6 4 3 8 8 C 1.38291 * 120.11337 * 269.72156 * 7 6 4 9 9 C 1.37925 * 120.34700 * 179.97438 * 8 7 6 10 10 C 1.39293 * 120.24101 * 0.55154 * 9 8 7 11 11 C 1.38879 * 118.87493 * 359.41025 * 10 9 8 12 12 C 1.37741 * 120.78537 * 0.42333 * 11 10 9 13 13 C 1.51641 * 107.03620 * 180.67909 * 11 10 9 14 14 C 1.54707 * 101.92308 * 15.47819 * 13 11 10 15 15 O 1.36138 * 129.88290 * 179.10031 * 10 9 8 16 16 C 1.46505 * 120.00105 * 95.13661 * 3 2 1 17 17 H 1.08996 * 110.88594 * 190.37947 * 16 3 2 18 18 C 1.55151 * 111.00513 * 66.49260 * 16 3 2 19 19 C 1.54320 * 102.94501 * 277.43295 * 18 16 3 20 20 N 1.47020 * 107.26909 * 337.80569 * 19 18 16 21 21 C 1.36938 * 125.64791 * 178.98833 * 20 19 18 22 22 H 1.08000 * 120.00015 * 174.92863 * 21 20 19 23 23 C 1.38813 * 120.00182 * 354.92829 * 21 20 19 24 24 N 1.31615 * 119.99719 * 5.71764 * 23 21 20 25 25 Si 1.86795 * 120.00013 * 185.72244 * 23 21 20 26 26 H 1.48501 * 109.47590 * 94.99728 * 25 23 21 27 27 H 1.48503 * 109.47057 * 214.99420 * 25 23 21 28 28 H 1.48504 * 109.47261 * 334.99230 * 25 23 21 29 29 C 1.47420 * 108.70490 * 358.94104 * 20 19 18 30 30 H 1.09001 * 109.47208 * 59.99926 * 1 2 3 31 31 H 1.09000 * 109.46703 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46947 * 299.99765 * 1 2 3 33 33 H 1.09004 * 109.47281 * 240.00590 * 2 1 3 34 34 H 1.08997 * 109.47691 * 119.99994 * 2 1 3 35 35 H 1.08997 * 109.47078 * 300.00451 * 6 4 3 36 36 H 1.08999 * 109.46896 * 59.99950 * 6 4 3 37 37 H 1.07994 * 119.82615 * 0.18041 * 8 7 6 38 38 H 1.08003 * 119.87898 * 180.28034 * 9 8 7 39 39 H 1.07999 * 120.01092 * 179.76780 * 12 11 10 40 40 H 1.09001 * 110.93636 * 133.63274 * 13 11 10 41 41 H 1.09002 * 110.94235 * 257.28194 * 13 11 10 42 42 H 1.08995 * 110.75298 * 93.01653 * 14 13 11 43 43 H 1.09004 * 110.74799 * 216.36751 * 14 13 11 44 44 H 1.09003 * 110.71961 * 35.79282 * 18 16 3 45 45 H 1.08997 * 110.72229 * 159.06452 * 18 16 3 46 46 H 1.09003 * 109.88316 * 97.21992 * 19 18 16 47 47 H 1.08997 * 109.88503 * 218.23255 * 19 18 16 48 48 H 0.97007 * 120.00196 * 179.97438 * 24 23 21 49 49 H 1.09005 * 110.36990 * 265.28982 * 29 20 19 50 50 H 1.08999 * 110.37018 * 142.96929 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1444 2.0515 -1.1624 5 8 2.6365 3.1599 -1.1732 6 6 1.6740 1.4235 -2.4492 7 6 1.9273 2.3717 -3.5929 8 6 0.9589 3.2870 -3.9628 9 6 1.1858 4.1573 -5.0084 10 6 2.3891 4.1139 -5.7088 11 6 3.3542 3.1910 -5.3273 12 6 3.1269 2.3251 -4.2805 13 6 4.5443 3.3870 -6.2464 14 6 4.2409 4.7690 -6.8719 15 8 2.8097 4.8577 -6.7686 16 6 2.3696 2.0340 1.2637 17 1 2.5373 3.1009 1.1164 18 6 3.6078 1.3605 1.9121 19 6 2.9977 0.1456 2.6424 20 7 1.5753 0.4412 2.8681 21 6 0.6728 -0.3933 3.4716 22 1 -0.3334 -0.0517 3.6646 23 6 1.0511 -1.6784 3.8353 24 7 2.3046 -2.0574 3.7039 25 14 -0.2190 -2.8699 4.5110 26 1 -0.7395 -3.7169 3.4079 27 1 0.4112 -3.7328 5.5423 28 1 -1.3383 -2.1075 5.1202 29 6 1.2818 1.7852 2.3382 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8935 -0.5138 0.8899 35 1 2.2180 0.4947 -2.6203 36 1 0.6068 1.2123 -2.3814 37 1 0.0213 3.3227 -3.4280 38 1 0.4260 4.8721 -5.2881 39 1 3.8847 1.6098 -3.9967 40 1 5.4747 3.4120 -5.6790 41 1 4.5776 2.6113 -7.0115 42 1 4.7193 5.5648 -6.3010 43 1 4.5553 4.7981 -7.9152 44 1 4.3146 1.0363 1.1484 45 1 4.0871 2.0358 2.6209 46 1 3.0974 -0.7468 2.0245 47 1 3.5031 -0.0058 3.5962 48 1 2.5692 -2.9553 3.9584 49 1 1.3544 2.5298 3.1310 50 1 0.2902 1.8066 1.8862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269339967.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:41 Heat of formation + Delta-G solvation = -15.809948 kcal Electronic energy + Delta-G solvation = -30854.612387 eV Core-core repulsion = 26847.817425 eV Total energy + Delta-G solvation = -4006.794961 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.05227 -41.30805 -39.33971 -38.24647 -36.06691 -34.33877 -33.62941 -32.94728 -31.77734 -30.45318 -30.16976 -29.31555 -28.04595 -26.29767 -24.41402 -24.06055 -23.05800 -22.65469 -21.90217 -21.49749 -19.73991 -18.82256 -18.35731 -18.30165 -17.72619 -17.13356 -17.04656 -16.64974 -16.40548 -15.84744 -15.60665 -15.30337 -15.05317 -14.78289 -14.57972 -14.22222 -14.11965 -14.03658 -13.88190 -13.72744 -13.65515 -13.38705 -13.31063 -12.93120 -12.90860 -12.79761 -12.69306 -12.61076 -12.45692 -12.22746 -11.99759 -11.96174 -11.78901 -11.73628 -11.66525 -11.50107 -11.32197 -10.66204 -10.57962 -9.81892 -9.55455 -8.99782 -8.78721 -7.77949 -5.10885 0.31369 0.39188 1.50718 1.52433 1.59679 1.70021 2.08185 2.35901 2.54610 2.76069 3.42176 3.47623 3.63741 3.66190 3.77801 3.85312 3.95999 3.98031 4.10191 4.15271 4.20129 4.24481 4.35095 4.39687 4.42608 4.57153 4.61451 4.64132 4.65708 4.69118 4.74154 4.84087 4.87866 4.89987 4.91111 5.00144 5.08270 5.09649 5.15055 5.25276 5.33566 5.40967 5.54808 5.58370 5.61512 5.66157 5.68475 5.78970 5.85853 6.23310 6.24621 6.62101 7.17317 7.27347 7.83045 8.48793 9.32371 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024650 B = 0.002396 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.618898 B =11683.567039 C =11966.250337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.092 3.908 3 N -0.586 5.586 4 C 0.514 3.486 5 O -0.580 6.580 6 C -0.090 4.090 7 C -0.097 4.097 8 C -0.079 4.079 9 C -0.148 4.148 10 C 0.080 3.920 11 C -0.186 4.186 12 C -0.068 4.068 13 C -0.107 4.107 14 C 0.046 3.954 15 O -0.326 6.326 16 C 0.135 3.865 17 H 0.099 0.901 18 C -0.143 4.143 19 C 0.188 3.812 20 N -0.609 5.609 21 C -0.222 4.222 22 H 0.078 0.922 23 C -0.055 4.055 24 N -0.947 5.947 25 Si 0.964 3.036 26 H -0.285 1.285 27 H -0.303 1.303 28 H -0.274 1.274 29 C 0.124 3.876 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.143 0.857 38 H 0.138 0.862 39 H 0.132 0.868 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.081 0.919 43 H 0.133 0.867 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.032 0.968 47 H 0.001 0.999 48 H 0.245 0.755 49 H 0.031 0.969 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.597 8.504 -20.540 22.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.030 4.030 3 N -0.317 5.317 4 C 0.304 3.696 5 O -0.460 6.460 6 C -0.129 4.129 7 C -0.098 4.098 8 C -0.097 4.097 9 C -0.166 4.166 10 C 0.035 3.965 11 C -0.187 4.187 12 C -0.086 4.086 13 C -0.144 4.144 14 C -0.028 4.028 15 O -0.240 6.240 16 C 0.030 3.970 17 H 0.117 0.883 18 C -0.182 4.182 19 C 0.063 3.937 20 N -0.336 5.336 21 C -0.351 4.351 22 H 0.096 0.904 23 C -0.248 4.248 24 N -0.596 5.596 25 Si 0.794 3.206 26 H -0.212 1.212 27 H -0.230 1.230 28 H -0.199 1.199 29 C -0.002 4.002 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.161 0.839 38 H 0.156 0.844 39 H 0.150 0.850 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.099 0.901 43 H 0.151 0.849 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.050 0.950 47 H 0.019 0.981 48 H 0.054 0.946 49 H 0.048 0.952 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.719 9.015 -20.607 22.559 hybrid contribution -0.298 -0.926 1.107 1.474 sum 1.421 8.089 -19.501 21.160 Atomic orbital electron populations 1.22098 0.95275 1.02121 1.01632 1.21929 0.95399 0.81304 1.04390 1.47902 1.63975 1.14591 1.05278 1.21045 0.77740 0.85218 0.85588 1.90658 1.46271 1.21868 1.87197 1.20717 1.05225 0.98650 0.88287 1.19349 0.94678 0.98720 0.97059 1.20932 0.99747 0.93567 0.95447 1.20430 0.96515 1.02675 0.97022 1.19809 0.95847 0.92012 0.88813 1.21053 0.98483 0.99008 1.00117 1.20332 0.96548 0.98150 0.93602 1.21874 0.96651 0.98123 0.97747 1.24113 0.77247 0.97008 1.04437 1.86773 1.25072 1.67969 1.44228 1.22008 0.94676 0.96966 0.83354 0.88299 1.23125 0.97112 0.98494 0.99493 1.20928 0.83621 0.93394 0.95720 1.44645 1.06092 1.14215 1.68620 1.19226 0.92540 0.92582 1.30722 0.90400 1.25395 0.97751 0.98867 1.02810 1.70152 1.15925 1.18390 1.55121 0.85270 0.78654 0.79316 0.77355 1.21232 1.23031 1.19914 1.22033 0.97172 0.87395 0.93563 0.91502 0.92037 0.93362 0.89742 0.89009 0.86245 0.85888 0.83889 0.84374 0.84986 0.87906 0.87781 0.90058 0.84880 0.91151 0.90507 0.95022 0.98105 0.94572 0.95177 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.43 9.99 71.98 0.72 -3.71 16 2 C 0.09 2.86 5.04 86.38 0.44 3.29 16 3 N -0.59 -18.48 2.52 -790.12 -1.99 -20.47 16 4 C 0.51 15.43 7.62 87.66 0.67 16.09 16 5 O -0.58 -21.35 15.47 -3.03 -0.05 -21.40 16 6 C -0.09 -1.96 4.51 29.10 0.13 -1.83 16 7 C -0.10 -2.31 4.38 -19.83 -0.09 -2.40 16 8 C -0.08 -1.81 9.68 22.21 0.21 -1.60 16 9 C -0.15 -3.46 10.06 22.45 0.23 -3.23 16 10 C 0.08 1.95 7.04 22.68 0.16 2.11 16 11 C -0.19 -4.17 6.27 -19.53 -0.12 -4.29 16 12 C -0.07 -1.58 9.70 22.18 0.22 -1.37 16 13 C -0.11 -1.60 7.12 30.73 0.22 -1.38 16 14 C 0.05 0.65 8.01 72.56 0.58 1.24 16 15 O -0.33 -7.33 11.10 -95.12 -1.06 -8.39 16 16 C 0.13 4.71 3.61 46.38 0.17 4.88 16 17 H 0.10 3.46 7.12 -2.39 -0.02 3.44 16 18 C -0.14 -5.24 6.56 31.78 0.21 -5.03 16 19 C 0.19 8.61 4.31 86.73 0.37 8.99 16 20 N -0.61 -28.12 2.19 -692.00 -1.51 -29.64 16 21 C -0.22 -11.27 10.27 84.03 0.86 -10.41 16 22 H 0.08 3.87 7.83 -2.91 -0.02 3.84 16 23 C -0.05 -2.89 5.48 84.86 0.47 -2.42 16 24 N -0.95 -53.03 10.35 21.65 0.22 -52.81 16 25 Si 0.96 43.28 29.56 68.60 2.03 45.30 16 26 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 27 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 28 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 29 C 0.12 4.79 6.05 86.86 0.53 5.32 16 30 H 0.07 1.51 6.32 -2.39 -0.02 1.50 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 1.64 5.62 -2.39 -0.01 1.62 16 33 H 0.08 2.14 6.70 -2.38 -0.02 2.12 16 34 H 0.09 3.70 3.73 -2.39 -0.01 3.70 16 35 H 0.12 2.16 7.23 -2.39 -0.02 2.14 16 36 H 0.12 2.22 6.30 -2.39 -0.02 2.21 16 37 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 38 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 39 H 0.13 2.67 8.06 -2.91 -0.02 2.64 16 40 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 46 H 0.03 1.59 5.69 -2.39 -0.01 1.58 16 47 H 0.00 0.04 7.63 -2.39 -0.02 0.02 16 48 H 0.24 13.56 8.31 -92.70 -0.77 12.79 16 49 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 50 H 0.05 2.06 6.00 -2.39 -0.01 2.05 16 Total: -1.00 -66.46 386.02 4.56 -61.90 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.95 Total: 21.25 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 5.96 Total: 4.25 kcal Atomic # 7 Polarization: -99.64 SS G_CDS: -3.28 Total: -102.92 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -1.10 Total: -29.79 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -66.46 4.56 -61.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269339967.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.090 kcal (2) G-P(sol) polarization free energy of solvation -66.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds