Wall clock time and date at job start Wed Apr 1 2020 03:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42896 * 109.47160 * 2 1 4 4 C 1.42901 * 114.00092 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47384 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.46820 * 64.99823 * 5 4 3 7 7 C 1.39690 * 123.92659 * 270.02335 * 6 5 4 8 8 C 1.39270 * 130.80278 * 0.04095 * 7 6 5 9 9 C 1.37919 * 120.23417 * 180.10979 * 8 7 6 10 10 C 1.38304 * 120.31136 * 0.02562 * 9 8 7 11 11 C 1.38342 * 119.84606 * 359.92885 * 10 9 8 12 12 C 1.37702 * 120.06293 * 359.97438 * 11 10 9 13 13 C 1.50010 * 133.69262 * 180.09928 * 12 11 10 14 14 C 1.53974 * 111.59921 * 59.16931 * 13 12 11 15 15 C 1.55112 * 101.53125 * 204.24529 * 14 13 12 16 16 N 1.47952 * 104.93293 * 35.89715 * 15 14 13 17 17 C 1.46895 * 111.00204 * 213.87158 * 16 15 14 18 18 C 1.50702 * 109.46770 * 290.77643 * 17 16 15 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72214 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 C 1.47755 * 108.51564 * 336.10312 * 16 15 14 27 27 C 1.34784 * 123.93069 * 90.00493 * 6 5 4 28 28 O 1.21285 * 126.71977 * 0.11362 * 27 6 5 29 29 H 1.09005 * 109.46714 * 299.99775 * 1 2 3 30 30 H 1.08998 * 109.47493 * 59.99789 * 1 2 3 31 31 H 1.09003 * 109.46952 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47191 * 240.00057 * 2 1 3 33 33 H 1.08998 * 109.47493 * 120.00211 * 2 1 3 34 34 H 1.08998 * 109.47519 * 59.99740 * 4 3 2 35 35 H 1.09003 * 109.47187 * 299.99920 * 4 3 2 36 36 H 1.09002 * 109.46830 * 305.00246 * 5 4 3 37 37 H 1.08996 * 109.47534 * 184.99373 * 5 4 3 38 38 H 1.08003 * 119.88191 * 0.09264 * 8 7 6 39 39 H 1.07994 * 119.84462 * 180.02562 * 9 8 7 40 40 H 1.08004 * 120.07303 * 179.89803 * 10 9 8 41 41 H 1.08002 * 119.97145 * 179.97438 * 11 10 9 42 42 H 1.09003 * 111.01439 * 322.30042 * 14 13 12 43 43 H 1.08997 * 111.01603 * 86.13907 * 14 13 12 44 44 H 1.09002 * 110.34474 * 277.03491 * 15 14 13 45 45 H 1.09003 * 110.35207 * 154.76453 * 15 14 13 46 46 H 1.09004 * 109.47258 * 170.77967 * 17 16 15 47 47 H 1.08994 * 109.47601 * 50.77559 * 17 16 15 48 48 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 49 49 H 1.09002 * 109.96952 * 121.18046 * 26 16 15 50 50 H 1.08997 * 109.97254 * 242.45283 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8254 2.9384 -0.0012 6 7 3.3878 3.5611 1.2507 7 6 2.1396 4.1628 1.4274 8 6 1.0720 4.3196 0.5469 9 6 -0.0776 4.9620 0.9567 10 6 -0.1799 5.4562 2.2444 11 6 0.8753 5.3041 3.1260 12 6 2.0244 4.6616 2.7223 13 6 3.3204 4.3317 3.4018 14 6 3.1000 3.4529 4.6468 15 6 4.3677 3.7736 5.4811 16 7 4.6359 5.2070 5.2314 17 6 6.0792 5.4803 5.2310 18 6 6.6206 5.3226 6.6285 19 1 5.9588 5.0466 7.4361 20 6 7.9621 5.5246 6.8750 21 7 8.7681 5.8604 5.8915 22 14 8.6345 5.3217 8.6059 23 1 7.5310 4.9426 9.5244 24 1 9.6711 4.2582 8.6127 25 1 9.2364 6.6023 9.0565 26 6 4.0261 5.5801 3.9383 27 6 4.1425 3.6197 2.3658 28 8 5.2655 3.1833 2.5052 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8333 0.9767 -0.8907 35 1 3.8340 0.9764 0.8892 36 1 3.3492 3.4411 -0.8430 37 1 4.9082 3.0255 -0.0911 38 1 1.1447 3.9370 -0.4604 39 1 -0.9018 5.0798 0.2688 40 1 -1.0813 5.9601 2.5607 41 1 0.7978 5.6895 4.1319 42 1 2.1963 3.7492 5.1794 43 1 3.0646 2.3970 4.3786 44 1 5.2074 3.1664 5.1432 45 1 4.1774 3.6026 6.5407 46 1 6.2561 6.4989 4.8856 47 1 6.5817 4.7785 4.5654 48 1 9.7118 6.0029 6.0650 49 1 3.3028 6.3823 4.0855 50 1 4.7998 5.8994 3.2401 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274030357.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:19 Heat of formation + Delta-G solvation = -29.184295 kcal Electronic energy + Delta-G solvation = -31419.062139 eV Core-core repulsion = 27411.687222 eV Total energy + Delta-G solvation = -4007.374916 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.92167 -38.47818 -38.42849 -37.46049 -35.78883 -33.70737 -32.49014 -31.65602 -30.40752 -29.94516 -28.51524 -28.20604 -26.48552 -24.34396 -23.09825 -22.83772 -22.35255 -21.98863 -21.07284 -20.01926 -19.38794 -17.31133 -17.23078 -16.76128 -16.26219 -16.15032 -15.85271 -15.68502 -15.08781 -14.53353 -14.36145 -14.33689 -14.15151 -14.00305 -13.51285 -13.28614 -13.19861 -13.03736 -12.92304 -12.52290 -12.39455 -12.31498 -12.24096 -11.85420 -11.77672 -11.60619 -11.38703 -11.35744 -11.20119 -11.14241 -10.92910 -10.59797 -10.46620 -10.35990 -10.25432 -9.92443 -9.78752 -9.56888 -9.10030 -8.78339 -8.35701 -7.86393 -7.21889 -5.93739 -3.94651 1.22340 1.37212 2.56099 2.68775 3.36435 3.36546 3.43241 3.48549 3.80448 4.22075 4.38329 4.50335 4.69439 4.69862 4.75190 4.83537 4.94011 4.95726 4.97674 5.03859 5.04633 5.06112 5.17422 5.24022 5.30776 5.40626 5.44006 5.45124 5.49780 5.61194 5.63323 5.74657 5.81713 5.84418 5.87970 6.04527 6.09493 6.16566 6.32730 6.42142 6.51026 6.65016 6.66370 6.71952 6.76332 6.89283 7.14580 7.23709 7.50306 7.87050 8.04424 8.09950 8.25769 8.59468 9.13142 9.68819 11.17421 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015064 B = 0.003087 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.252871 B = 9068.936013 C = 9926.950309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.058 3.942 3 O -0.380 6.380 4 C 0.045 3.955 5 C 0.113 3.887 6 N -0.552 5.552 7 C 0.157 3.843 8 C -0.126 4.126 9 C -0.093 4.093 10 C -0.145 4.145 11 C -0.063 4.063 12 C -0.118 4.118 13 C -0.076 4.076 14 C -0.098 4.098 15 C 0.057 3.943 16 N -0.521 5.521 17 C 0.186 3.814 18 C -0.503 4.503 19 H 0.063 0.937 20 C 0.054 3.946 21 N -0.898 5.898 22 Si 0.897 3.103 23 H -0.272 1.272 24 H -0.286 1.286 25 H -0.285 1.285 26 C 0.076 3.924 27 C 0.537 3.463 28 O -0.479 6.479 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.077 0.923 46 H 0.027 0.973 47 H 0.001 0.999 48 H 0.259 0.741 49 H 0.080 0.920 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.322 -8.090 -15.398 26.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.019 4.019 3 O -0.300 6.300 4 C -0.033 4.033 5 C -0.009 4.009 6 N -0.275 5.275 7 C 0.062 3.938 8 C -0.147 4.147 9 C -0.111 4.111 10 C -0.164 4.164 11 C -0.082 4.082 12 C -0.121 4.121 13 C -0.080 4.080 14 C -0.136 4.136 15 C -0.071 4.071 16 N -0.245 5.245 17 C 0.061 3.939 18 C -0.542 4.542 19 H 0.081 0.919 20 C -0.147 4.147 21 N -0.538 5.538 22 Si 0.725 3.275 23 H -0.197 1.197 24 H -0.212 1.212 25 H -0.211 1.211 26 C -0.053 4.053 27 C 0.326 3.674 28 O -0.350 6.350 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.110 0.890 37 H 0.123 0.877 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.095 0.905 46 H 0.045 0.955 47 H 0.019 0.981 48 H 0.069 0.931 49 H 0.098 0.902 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.664 -7.908 -15.015 25.975 hybrid contribution 1.154 -0.933 -0.044 1.485 sum -18.510 -8.841 -15.060 25.448 Atomic orbital electron populations 1.21715 0.93616 1.02095 1.03192 1.22438 0.95681 0.83854 0.99895 1.87925 1.20340 1.26292 1.95423 1.22943 0.82210 0.97007 1.01146 1.21666 1.01490 0.91674 0.86024 1.45980 1.14276 1.54359 1.12862 1.18230 0.85992 0.94683 0.94927 1.20234 0.92126 1.03091 0.99286 1.20795 0.96716 0.97393 0.96222 1.20973 0.98868 1.02684 0.93882 1.20238 0.91053 0.96833 1.00038 1.19539 0.95809 1.03008 0.93769 1.20623 0.92518 0.99201 0.95664 1.22540 1.00609 0.97757 0.92701 1.22972 0.94703 0.89958 0.99468 1.63929 1.17596 1.16719 1.26255 1.19965 0.80231 0.96282 0.97435 1.21176 0.92953 1.46078 0.93980 0.91886 1.24998 0.96992 0.95588 0.97159 1.69986 1.04457 1.48147 1.31230 0.86455 0.78864 0.77568 0.84602 1.19652 1.21198 1.21079 1.22569 0.97533 0.93444 0.91780 1.20348 0.85559 0.78647 0.82859 1.90827 1.16347 1.47237 1.80580 0.91726 0.91913 0.91271 0.93597 0.93573 0.91915 0.92668 0.88960 0.87716 0.85996 0.85786 0.85700 0.85356 0.89705 0.91516 0.92810 0.90463 0.95509 0.98084 0.93089 0.90179 0.93073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.06 0.49 6.66 37.16 0.25 0.74 16 3 O -0.38 -4.05 9.75 -35.23 -0.34 -4.39 16 4 C 0.04 0.46 6.28 37.16 0.23 0.69 16 5 C 0.11 1.27 6.15 -4.04 -0.02 1.25 16 6 N -0.55 -7.94 2.71 -113.49 -0.31 -8.25 16 7 C 0.16 2.11 6.45 -83.52 -0.54 1.58 16 8 C -0.13 -1.39 9.45 -39.31 -0.37 -1.76 16 9 C -0.09 -0.88 10.02 -39.67 -0.40 -1.27 16 10 C -0.15 -1.42 10.06 -39.52 -0.40 -1.81 16 11 C -0.06 -0.74 9.89 -39.74 -0.39 -1.14 16 12 C -0.12 -1.66 5.00 -104.78 -0.52 -2.18 16 13 C -0.08 -1.27 0.77 -156.82 -0.12 -1.39 16 14 C -0.10 -1.60 6.04 -25.11 -0.15 -1.75 16 15 C 0.06 1.17 5.95 -2.13 -0.01 1.16 16 16 N -0.52 -11.84 5.17 -232.98 -1.20 -13.04 16 17 C 0.19 5.15 4.33 -4.98 -0.02 5.13 16 18 C -0.50 -14.74 8.81 -34.44 -0.30 -15.04 16 19 H 0.06 1.82 7.77 -52.49 -0.41 1.41 16 20 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 21 N -0.90 -27.84 13.29 55.43 0.74 -27.11 16 22 Si 0.90 22.36 29.54 -169.99 -5.02 17.34 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 26 C 0.08 1.47 6.11 -3.30 -0.02 1.45 16 27 C 0.54 9.62 6.68 -11.23 -0.07 9.55 16 28 O -0.48 -10.31 17.24 5.55 0.10 -10.22 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.84 7.62 -51.93 -0.40 0.45 16 37 H 0.10 1.18 7.97 -51.93 -0.41 0.76 16 38 H 0.12 1.19 7.70 -52.48 -0.40 0.79 16 39 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 41 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 42 H 0.08 1.23 8.06 -51.93 -0.42 0.81 16 43 H 0.07 1.04 8.00 -51.93 -0.42 0.63 16 44 H 0.05 1.25 7.29 -51.93 -0.38 0.87 16 45 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 46 H 0.03 0.79 8.04 -51.93 -0.42 0.37 16 47 H 0.00 0.04 7.85 -51.93 -0.41 -0.37 16 48 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 49 H 0.08 1.40 7.77 -51.93 -0.40 1.00 16 50 H 0.05 1.08 7.26 -51.93 -0.38 0.70 16 LS Contribution 406.33 15.07 6.12 6.12 Total: -1.00 -34.39 406.33 -10.73 -45.12 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -8.23 Total: -1.56 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -2.59 Total: -4.03 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.77 Total: -48.39 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.25 Total: -14.61 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.39 -10.73 -45.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030357.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.939 kcal (2) G-P(sol) polarization free energy of solvation -34.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds