Wall clock time and date at job start Wed Apr 1 2020 03:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47018 * 111.00186 * 2 1 4 4 C 1.53099 * 109.25277 * 182.44610 * 3 2 1 5 5 O 1.43028 * 109.24773 * 303.08605 * 4 3 2 6 6 C 1.42940 * 113.76486 * 58.57459 * 5 4 3 7 7 C 1.52971 * 109.54947 * 61.63332 * 6 5 4 8 8 C 1.53063 * 109.53797 * 58.68926 * 7 6 5 9 9 C 1.53193 * 109.31217 * 61.27767 * 8 7 6 10 10 N 1.46923 * 108.79673 * 305.35387 * 9 8 7 11 11 C 1.34781 * 120.64037 * 233.63422 * 10 9 8 12 12 O 1.21613 * 119.99942 * 174.58857 * 11 10 9 13 13 C 1.47424 * 119.99939 * 354.59530 * 11 10 9 14 14 C 1.39229 * 120.28427 * 310.67900 * 13 11 10 15 15 C 1.38217 * 120.09782 * 180.23841 * 14 13 11 16 16 C 1.38831 * 120.67176 * 359.78839 * 15 14 13 17 17 C 1.37598 * 120.57004 * 359.95077 * 16 15 14 18 18 C 1.40705 * 119.88241 * 0.02562 * 17 16 15 19 19 C 1.40888 * 120.32407 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99652 * 151.62379 * 19 18 17 21 21 C 1.40269 * 120.00600 * 331.62948 * 19 18 17 22 22 N 1.30634 * 119.99771 * 349.14702 * 21 19 18 23 23 Si 1.86797 * 120.00382 * 169.15314 * 21 19 18 24 24 H 1.48500 * 109.47145 * 179.97438 * 23 21 19 25 25 H 1.48505 * 109.46975 * 299.99845 * 23 21 19 26 26 H 1.48501 * 109.47312 * 59.99711 * 23 21 19 27 27 C 1.46944 * 118.72061 * 53.90791 * 10 9 8 28 28 C 1.47026 * 111.00043 * 123.63039 * 2 1 3 29 29 H 1.08998 * 109.47143 * 56.04591 * 1 2 3 30 30 H 1.09005 * 109.47393 * 176.04991 * 1 2 3 31 31 H 1.09000 * 109.46960 * 296.04276 * 1 2 3 32 32 H 1.08993 * 109.50481 * 62.50928 * 3 2 1 33 33 H 1.09002 * 109.54151 * 302.39695 * 3 2 1 34 34 H 1.09001 * 109.50757 * 183.15315 * 4 3 2 35 35 H 1.08999 * 109.54652 * 63.04262 * 4 3 2 36 36 H 1.08999 * 109.46244 * 298.67132 * 7 6 5 37 37 H 1.08996 * 109.46422 * 178.70905 * 7 6 5 38 38 H 1.08990 * 109.49597 * 301.32430 * 8 7 6 39 39 H 1.08998 * 109.51909 * 181.24340 * 8 7 6 40 40 H 1.09000 * 109.58259 * 185.56118 * 9 8 7 41 41 H 1.08997 * 109.69472 * 65.21856 * 9 8 7 42 42 H 1.08007 * 119.94957 * 0.02562 * 14 13 11 43 43 H 1.08001 * 119.66874 * 179.76011 * 15 14 13 44 44 H 1.07997 * 119.71627 * 179.97438 * 16 15 14 45 45 H 1.07997 * 120.05386 * 180.02562 * 17 16 15 46 46 H 0.96997 * 120.00090 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.58319 * 65.95017 * 27 10 9 48 48 H 1.08997 * 109.58688 * 186.37940 * 27 10 9 49 49 H 1.09002 * 109.50275 * 57.77351 * 28 2 1 50 50 H 1.08999 * 109.50348 * 297.65976 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5249 1.3263 -0.0617 5 8 4.0182 0.5580 1.0393 6 6 3.5244 -0.7830 1.0731 7 6 3.9685 -1.5240 -0.1893 8 6 5.4967 -1.5186 -0.2752 9 6 6.0752 -2.2453 0.9430 10 7 5.5376 -1.6269 2.1626 11 6 6.3647 -1.1846 3.1305 12 8 5.9143 -0.5868 4.0890 13 6 7.8155 -1.4255 3.0272 14 6 8.2970 -2.7003 2.7419 15 6 9.6581 -2.9228 2.6508 16 6 10.5596 -1.8836 2.8370 17 6 10.1138 -0.6118 3.1148 18 6 8.7332 -0.3586 3.2124 19 6 8.2665 0.9399 3.4971 20 1 7.2974 1.2558 3.1400 21 6 9.0605 1.8226 4.2440 22 7 10.1290 1.3834 4.8540 23 14 8.5901 3.6262 4.3669 24 1 9.5838 4.3408 5.2077 25 1 8.5681 4.2256 3.0083 26 1 7.2440 3.7459 4.9826 27 6 4.0806 -1.5053 2.3094 28 6 1.9959 -0.7602 1.1429 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0708 31 1 -0.3633 0.4512 0.9233 32 1 1.6836 1.8822 0.9114 33 1 1.6128 1.9101 -0.8674 34 1 3.9223 2.3397 -0.0055 35 1 3.8383 0.8639 -0.9977 36 1 3.5537 -1.0277 -1.0666 37 1 3.6106 -2.5529 -0.1513 38 1 5.8565 -0.4899 -0.2899 39 1 5.8121 -2.0274 -1.1860 40 1 7.1617 -2.1589 0.9380 41 1 5.7922 -3.2974 0.9117 42 1 7.6060 -3.5173 2.5950 43 1 10.0242 -3.9153 2.4330 44 1 11.6199 -2.0748 2.7627 45 1 10.8225 0.1906 3.2577 46 1 10.6778 1.9936 5.3708 47 1 3.6371 -2.4981 2.3866 48 1 3.8504 -0.9292 3.2056 49 1 1.6148 -1.7808 1.1078 50 1 1.6810 -0.2853 2.0721 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274891897.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:37 Heat of formation + Delta-G solvation = -44.123622 kcal Electronic energy + Delta-G solvation = -32105.253606 eV Core-core repulsion = 28097.230872 eV Total energy + Delta-G solvation = -4008.022734 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.56876 -38.92172 -37.01842 -36.15918 -35.27387 -33.70832 -32.35018 -31.59227 -29.99150 -29.52223 -29.10071 -26.79151 -25.67454 -24.90852 -24.18442 -22.66787 -22.10470 -20.99890 -20.81730 -19.28651 -18.47459 -17.18610 -16.59438 -16.15893 -16.08314 -15.55807 -15.27368 -15.17270 -14.97746 -14.81764 -14.26768 -14.25874 -13.80498 -13.51156 -13.37244 -13.19689 -12.79032 -12.63925 -12.49067 -12.27688 -12.18756 -12.12746 -12.08841 -11.89848 -11.55752 -11.39494 -11.13350 -11.07243 -10.96977 -10.83310 -10.72243 -10.55480 -10.39125 -10.10611 -9.86596 -9.61899 -9.46033 -9.21109 -8.59302 -8.56716 -7.94686 -7.45512 -7.38822 -6.75106 -4.36914 2.56271 2.86846 3.09644 3.15461 3.27163 3.50336 3.78105 3.81145 3.98240 4.04655 4.65481 4.68203 4.78842 4.81772 4.87291 5.07235 5.15115 5.18729 5.26504 5.31017 5.43658 5.46975 5.51480 5.57600 5.61826 5.63770 5.68580 5.78139 5.84651 5.90320 5.94470 5.99300 6.11014 6.19185 6.26159 6.35963 6.41118 6.54471 6.63586 6.70924 6.72032 7.03341 7.14879 7.19539 7.28882 7.40448 7.51446 7.73170 7.94124 8.02770 8.19697 8.31280 8.62223 8.84668 8.91505 9.33686 10.17535 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012120 B = 0.004118 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.727599 B = 6797.431954 C = 8323.204348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.538 5.538 3 C 0.017 3.983 4 C 0.059 3.941 5 O -0.353 6.353 6 C 0.109 3.891 7 C -0.131 4.131 8 C -0.133 4.133 9 C 0.110 3.890 10 N -0.614 5.614 11 C 0.588 3.412 12 O -0.538 6.538 13 C -0.252 4.252 14 C -0.060 4.060 15 C -0.248 4.248 16 C -0.096 4.096 17 C -0.156 4.156 18 C 0.146 3.854 19 C -0.425 4.425 20 H 0.082 0.918 21 C 0.075 3.925 22 N -0.790 5.790 23 Si 0.913 3.087 24 H -0.278 1.278 25 H -0.263 1.263 26 H -0.262 1.262 27 C 0.129 3.871 28 C 0.031 3.969 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.026 0.974 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.054 0.946 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.124 0.876 46 H 0.282 0.718 47 H 0.072 0.928 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.434 -3.065 -11.332 17.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.262 5.262 3 C -0.111 4.111 4 C -0.019 4.019 5 O -0.271 6.271 6 C 0.068 3.932 7 C -0.169 4.169 8 C -0.171 4.171 9 C -0.013 4.013 10 N -0.349 5.349 11 C 0.380 3.620 12 O -0.414 6.414 13 C -0.257 4.257 14 C -0.079 4.079 15 C -0.268 4.268 16 C -0.115 4.115 17 C -0.175 4.175 18 C 0.142 3.858 19 C -0.454 4.454 20 H 0.100 0.900 21 C -0.143 4.143 22 N -0.415 5.415 23 Si 0.737 3.263 24 H -0.203 1.203 25 H -0.188 1.188 26 H -0.187 1.187 27 C 0.005 3.995 28 C -0.098 4.098 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.119 0.881 41 H 0.073 0.927 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.142 0.858 46 H 0.094 0.906 47 H 0.090 0.910 48 H 0.114 0.886 49 H 0.103 0.897 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.185 -2.798 -10.905 17.338 hybrid contribution -0.770 1.038 0.602 1.426 sum -13.955 -1.761 -10.302 17.435 Atomic orbital electron populations 1.22376 0.87143 1.02280 1.00533 1.62203 1.07870 1.13685 1.42482 1.22830 0.97169 0.89627 1.01473 1.22649 0.91495 0.96669 0.91038 1.88231 1.69377 1.22344 1.47123 1.21950 0.90726 0.83924 0.96617 1.21954 0.96381 1.00454 0.98087 1.21876 0.95014 1.02287 0.97919 1.21761 1.00999 0.95053 0.83532 1.47951 1.04704 1.62630 1.19600 1.18504 0.86529 0.75997 0.80937 1.90673 1.77593 1.40402 1.32741 1.19397 0.90766 0.94748 1.20744 1.20582 0.94847 0.94599 0.97884 1.20251 0.92990 0.97727 1.15791 1.20789 0.97204 0.93917 0.99553 1.21413 0.96003 0.95973 1.04140 1.17375 0.90664 0.91460 0.86307 1.19630 1.02572 0.96123 1.27070 0.90010 1.25980 0.93688 1.01208 0.93429 1.69698 1.12611 1.37145 1.22037 0.86273 0.79563 0.81165 0.79285 1.20280 1.18764 1.18688 1.21409 0.82019 0.98833 0.97267 1.22717 0.95673 0.99262 0.92102 0.91337 0.91235 0.95578 0.93965 0.89919 0.88606 0.92185 0.90589 0.91452 0.90882 0.91313 0.88112 0.92749 0.89093 0.89221 0.89233 0.85843 0.90648 0.91032 0.88624 0.89672 0.93689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.61 60.06 0.58 0.78 16 2 N -0.54 -5.70 4.35 -242.63 -1.06 -6.76 16 3 C 0.02 0.19 5.66 -3.71 -0.02 0.16 16 4 C 0.06 0.75 6.61 37.21 0.25 0.99 16 5 O -0.35 -5.86 9.49 -35.23 -0.33 -6.20 16 6 C 0.11 1.52 0.70 -90.31 -0.06 1.45 16 7 C -0.13 -1.60 4.23 -26.71 -0.11 -1.71 16 8 C -0.13 -1.81 5.94 -26.60 -0.16 -1.97 16 9 C 0.11 1.73 5.30 -3.71 -0.02 1.71 16 10 N -0.61 -11.57 2.91 -173.77 -0.51 -12.07 16 11 C 0.59 14.10 6.49 -12.52 -0.08 14.01 16 12 O -0.54 -14.83 15.27 5.27 0.08 -14.75 16 13 C -0.25 -6.24 4.84 -104.37 -0.51 -6.75 16 14 C -0.06 -1.32 7.56 -39.22 -0.30 -1.61 16 15 C -0.25 -5.34 10.03 -39.37 -0.39 -5.73 16 16 C -0.10 -2.19 10.01 -39.60 -0.40 -2.59 16 17 C -0.16 -4.01 8.66 -38.88 -0.34 -4.35 16 18 C 0.15 3.94 5.58 -106.54 -0.59 3.35 16 19 C -0.43 -11.85 7.91 -37.82 -0.30 -12.15 16 20 H 0.08 2.36 7.03 -52.48 -0.37 1.99 16 21 C 0.08 1.97 5.26 -17.30 -0.09 1.88 16 22 N -0.79 -20.78 10.82 55.56 0.60 -20.18 16 23 Si 0.91 19.90 29.58 -169.99 -5.03 14.87 16 24 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 25 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 26 H -0.26 -5.89 7.11 56.52 0.40 -5.49 16 27 C 0.13 2.07 5.43 -3.49 -0.02 2.05 16 28 C 0.03 0.36 4.36 -3.74 -0.02 0.34 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 0.72 6.54 -51.93 -0.34 0.38 16 36 H 0.08 0.91 6.19 -51.93 -0.32 0.59 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.17 7.62 -51.93 -0.40 0.77 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 1.78 5.16 -51.93 -0.27 1.52 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.09 1.74 7.39 -52.48 -0.39 1.35 16 43 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 45 H 0.12 3.25 6.19 -52.49 -0.32 2.93 16 46 H 0.28 6.76 8.29 -40.82 -0.34 6.42 16 47 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 48 H 0.10 1.78 7.00 -51.93 -0.36 1.41 16 49 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 383.12 15.07 5.77 5.77 Total: -1.00 -31.48 383.12 -10.87 -42.35 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -7.82 Total: 7.09 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -2.58 Total: -10.13 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: -0.96 Total: -39.01 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.25 Total: -20.95 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.03 Total: 14.87 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.48 -10.87 -42.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274891897.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.775 kcal (2) G-P(sol) polarization free energy of solvation -31.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds