Wall clock time and date at job start Wed Apr 1 2020 03:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47018 * 111.00186 * 2 1 4 4 C 1.53099 * 109.25277 * 182.44610 * 3 2 1 5 5 O 1.43028 * 109.24773 * 303.08605 * 4 3 2 6 6 C 1.42940 * 113.76486 * 58.57459 * 5 4 3 7 7 C 1.52971 * 109.54947 * 61.63332 * 6 5 4 8 8 C 1.53063 * 109.53797 * 58.68926 * 7 6 5 9 9 C 1.53193 * 109.31217 * 61.27767 * 8 7 6 10 10 N 1.46923 * 108.79673 * 305.35387 * 9 8 7 11 11 C 1.34781 * 120.64037 * 233.63422 * 10 9 8 12 12 O 1.21613 * 119.99942 * 174.58857 * 11 10 9 13 13 C 1.47424 * 119.99939 * 354.59530 * 11 10 9 14 14 C 1.39229 * 120.28427 * 310.67900 * 13 11 10 15 15 C 1.38217 * 120.09782 * 180.23841 * 14 13 11 16 16 C 1.38831 * 120.67176 * 359.78839 * 15 14 13 17 17 C 1.37598 * 120.57004 * 359.95077 * 16 15 14 18 18 C 1.40705 * 119.88241 * 0.02562 * 17 16 15 19 19 C 1.40888 * 120.32407 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99652 * 151.62379 * 19 18 17 21 21 C 1.40269 * 120.00600 * 331.62948 * 19 18 17 22 22 N 1.30634 * 119.99771 * 349.14702 * 21 19 18 23 23 Si 1.86797 * 120.00382 * 169.15314 * 21 19 18 24 24 H 1.48500 * 109.47145 * 179.97438 * 23 21 19 25 25 H 1.48505 * 109.46975 * 299.99845 * 23 21 19 26 26 H 1.48501 * 109.47312 * 59.99711 * 23 21 19 27 27 C 1.46944 * 118.72061 * 53.90791 * 10 9 8 28 28 C 1.47026 * 111.00043 * 123.63039 * 2 1 3 29 29 H 1.08998 * 109.47143 * 56.04591 * 1 2 3 30 30 H 1.09005 * 109.47393 * 176.04991 * 1 2 3 31 31 H 1.09000 * 109.46960 * 296.04276 * 1 2 3 32 32 H 1.08993 * 109.50481 * 62.50928 * 3 2 1 33 33 H 1.09002 * 109.54151 * 302.39695 * 3 2 1 34 34 H 1.09001 * 109.50757 * 183.15315 * 4 3 2 35 35 H 1.08999 * 109.54652 * 63.04262 * 4 3 2 36 36 H 1.08999 * 109.46244 * 298.67132 * 7 6 5 37 37 H 1.08996 * 109.46422 * 178.70905 * 7 6 5 38 38 H 1.08990 * 109.49597 * 301.32430 * 8 7 6 39 39 H 1.08998 * 109.51909 * 181.24340 * 8 7 6 40 40 H 1.09000 * 109.58259 * 185.56118 * 9 8 7 41 41 H 1.08997 * 109.69472 * 65.21856 * 9 8 7 42 42 H 1.08007 * 119.94957 * 0.02562 * 14 13 11 43 43 H 1.08001 * 119.66874 * 179.76011 * 15 14 13 44 44 H 1.07997 * 119.71627 * 179.97438 * 16 15 14 45 45 H 1.07997 * 120.05386 * 180.02562 * 17 16 15 46 46 H 0.96997 * 120.00090 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.58319 * 65.95017 * 27 10 9 48 48 H 1.08997 * 109.58688 * 186.37940 * 27 10 9 49 49 H 1.09002 * 109.50275 * 57.77351 * 28 2 1 50 50 H 1.08999 * 109.50348 * 297.65976 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5249 1.3263 -0.0617 5 8 4.0182 0.5580 1.0393 6 6 3.5244 -0.7830 1.0731 7 6 3.9685 -1.5240 -0.1893 8 6 5.4967 -1.5186 -0.2752 9 6 6.0752 -2.2453 0.9430 10 7 5.5376 -1.6269 2.1626 11 6 6.3647 -1.1846 3.1305 12 8 5.9143 -0.5868 4.0890 13 6 7.8155 -1.4255 3.0272 14 6 8.2970 -2.7003 2.7419 15 6 9.6581 -2.9228 2.6508 16 6 10.5596 -1.8836 2.8370 17 6 10.1138 -0.6118 3.1148 18 6 8.7332 -0.3586 3.2124 19 6 8.2665 0.9399 3.4971 20 1 7.2974 1.2558 3.1400 21 6 9.0605 1.8226 4.2440 22 7 10.1290 1.3834 4.8540 23 14 8.5901 3.6262 4.3669 24 1 9.5838 4.3408 5.2077 25 1 8.5681 4.2256 3.0083 26 1 7.2440 3.7459 4.9826 27 6 4.0806 -1.5053 2.3094 28 6 1.9959 -0.7602 1.1429 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0708 31 1 -0.3633 0.4512 0.9233 32 1 1.6836 1.8822 0.9114 33 1 1.6128 1.9101 -0.8674 34 1 3.9223 2.3397 -0.0055 35 1 3.8383 0.8639 -0.9977 36 1 3.5537 -1.0277 -1.0666 37 1 3.6106 -2.5529 -0.1513 38 1 5.8565 -0.4899 -0.2899 39 1 5.8121 -2.0274 -1.1860 40 1 7.1617 -2.1589 0.9380 41 1 5.7922 -3.2974 0.9117 42 1 7.6060 -3.5173 2.5950 43 1 10.0242 -3.9153 2.4330 44 1 11.6199 -2.0748 2.7627 45 1 10.8225 0.1906 3.2577 46 1 10.6778 1.9936 5.3708 47 1 3.6371 -2.4981 2.3866 48 1 3.8504 -0.9292 3.2056 49 1 1.6148 -1.7808 1.1078 50 1 1.6810 -0.2853 2.0721 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274891897.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:36 Heat of formation + Delta-G solvation = -64.363436 kcal Electronic energy + Delta-G solvation = -32106.131270 eV Core-core repulsion = 28097.230872 eV Total energy + Delta-G solvation = -4008.900399 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.75936 -40.49591 -38.69502 -37.57039 -36.43377 -35.61339 -33.66367 -32.80452 -31.82374 -31.27807 -30.09651 -27.90873 -27.34859 -26.44838 -25.07519 -23.90182 -23.56391 -22.74487 -22.23159 -20.39628 -20.04723 -19.08988 -18.04537 -17.38126 -17.33432 -17.19138 -16.69909 -16.31180 -16.03335 -16.02628 -15.87519 -15.75625 -15.12181 -14.92866 -14.65215 -14.54200 -14.41406 -14.10856 -13.82406 -13.60469 -13.54659 -13.32795 -13.28777 -13.06765 -12.95480 -12.83499 -12.79392 -12.66100 -12.32265 -12.21988 -12.04185 -11.90445 -11.78241 -11.67487 -11.47926 -11.23590 -11.12500 -10.54865 -10.39145 -9.53295 -9.41710 -9.28534 -9.26372 -8.67747 -6.39511 0.68620 1.02575 1.27892 1.39599 1.47489 2.02994 2.16433 2.32991 2.71995 2.76409 2.84043 3.67948 3.69044 3.76353 3.82293 3.94976 4.10694 4.14390 4.16598 4.22792 4.30720 4.41703 4.45947 4.50299 4.56304 4.60621 4.62766 4.65359 4.67984 4.74936 4.79693 4.84617 4.88040 4.94324 4.98243 5.00032 5.08741 5.12751 5.26248 5.30837 5.37177 5.42762 5.60312 5.75903 5.85725 5.88507 5.95278 6.04032 6.12902 6.30812 6.35194 6.55734 6.69313 6.88686 6.96663 7.55183 8.26984 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012120 B = 0.004118 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.727599 B = 6797.431954 C = 8323.204348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.537 5.537 3 C 0.023 3.977 4 C 0.055 3.945 5 O -0.398 6.398 6 C 0.107 3.893 7 C -0.120 4.120 8 C -0.127 4.127 9 C 0.104 3.896 10 N -0.605 5.605 11 C 0.579 3.421 12 O -0.592 6.592 13 C -0.266 4.266 14 C -0.055 4.055 15 C -0.234 4.234 16 C -0.094 4.094 17 C -0.183 4.183 18 C 0.114 3.886 19 C -0.465 4.465 20 H 0.051 0.949 21 C 0.037 3.963 22 N -0.818 5.818 23 Si 0.973 3.027 24 H -0.253 1.253 25 H -0.255 1.255 26 H -0.278 1.278 27 C 0.123 3.877 28 C 0.037 3.963 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.021 0.979 32 H 0.027 0.973 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.039 0.961 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.125 0.875 43 H 0.132 0.868 44 H 0.119 0.881 45 H 0.107 0.893 46 H 0.290 0.710 47 H 0.110 0.890 48 H 0.058 0.942 49 H 0.111 0.889 50 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.629 -5.663 -13.821 20.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.262 5.262 3 C -0.105 4.105 4 C -0.022 4.022 5 O -0.318 6.318 6 C 0.066 3.934 7 C -0.157 4.157 8 C -0.165 4.165 9 C -0.018 4.018 10 N -0.337 5.337 11 C 0.371 3.629 12 O -0.473 6.473 13 C -0.270 4.270 14 C -0.074 4.074 15 C -0.253 4.253 16 C -0.112 4.112 17 C -0.202 4.202 18 C 0.111 3.889 19 C -0.494 4.494 20 H 0.069 0.931 21 C -0.178 4.178 22 N -0.444 5.444 23 Si 0.794 3.206 24 H -0.177 1.177 25 H -0.179 1.179 26 H -0.203 1.203 27 C 0.000 4.000 28 C -0.092 4.092 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.040 0.960 32 H 0.045 0.955 33 H 0.126 0.874 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.058 0.942 39 H 0.118 0.882 40 H 0.097 0.903 41 H 0.111 0.889 42 H 0.143 0.857 43 H 0.150 0.850 44 H 0.137 0.863 45 H 0.125 0.875 46 H 0.101 0.899 47 H 0.128 0.872 48 H 0.077 0.923 49 H 0.129 0.871 50 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -14.390 -5.432 -13.458 20.438 hybrid contribution -0.427 1.641 1.293 2.132 sum -14.817 -3.791 -12.165 19.542 Atomic orbital electron populations 1.22462 0.85375 1.03523 1.00955 1.62250 1.09352 1.13076 1.41516 1.22777 0.95684 0.90224 1.01852 1.22779 0.92983 0.96173 0.90260 1.88182 1.70657 1.24066 1.48883 1.22028 0.92192 0.82933 0.96231 1.21901 0.94999 1.01725 0.97108 1.21829 0.96137 1.00391 0.98121 1.22020 0.99900 0.97127 0.82745 1.47912 1.05599 1.61027 1.19201 1.18566 0.86963 0.75940 0.81388 1.90629 1.78410 1.42977 1.35313 1.19725 0.91310 0.95670 1.20323 1.20916 0.95931 0.94068 0.96468 1.20756 0.92497 0.99089 1.12909 1.21155 0.99223 0.92965 0.97889 1.21365 0.95264 0.97197 1.06396 1.17717 0.91956 0.92045 0.87182 1.19544 1.02096 0.97956 1.29830 0.93076 1.26646 0.93652 1.04810 0.92677 1.69720 1.13453 1.38483 1.22766 0.85403 0.78758 0.76637 0.79776 1.17669 1.17919 1.20348 1.21677 0.80457 1.00664 0.97227 1.22640 0.93920 1.00724 0.91875 0.89887 0.89753 0.96035 0.95451 0.87442 0.89031 0.91331 0.89719 0.88696 0.94235 0.88156 0.90266 0.88864 0.85699 0.84967 0.86261 0.87464 0.89872 0.87226 0.92301 0.87095 0.95487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.61 127.69 1.23 1.56 16 2 N -0.54 -10.14 4.35 -921.55 -4.01 -14.14 16 3 C 0.02 0.47 5.66 86.31 0.49 0.96 16 4 C 0.05 1.40 6.61 72.02 0.48 1.88 16 5 O -0.40 -13.79 9.49 -148.98 -1.41 -15.20 16 6 C 0.11 2.87 0.70 -10.59 -0.01 2.86 16 7 C -0.12 -2.56 4.23 30.61 0.13 -2.43 16 8 C -0.13 -3.19 5.94 30.68 0.18 -3.01 16 9 C 0.10 3.06 5.30 86.36 0.46 3.51 16 10 N -0.60 -22.88 2.91 -821.93 -2.39 -25.27 16 11 C 0.58 29.05 6.49 86.66 0.56 29.62 16 12 O -0.59 -35.13 15.27 -4.07 -0.06 -35.19 16 13 C -0.27 -13.55 4.84 -19.70 -0.10 -13.64 16 14 C -0.06 -2.32 7.56 22.50 0.17 -2.15 16 15 C -0.23 -9.34 10.03 22.41 0.22 -9.12 16 16 C -0.09 -4.17 10.01 22.26 0.22 -3.95 16 17 C -0.18 -9.70 8.66 22.72 0.20 -9.51 16 18 C 0.11 6.52 5.58 -21.11 -0.12 6.40 16 19 C -0.46 -27.95 7.91 23.41 0.19 -27.76 16 20 H 0.05 3.26 7.03 -2.91 -0.02 3.24 16 21 C 0.04 2.07 5.26 85.37 0.45 2.52 16 22 N -0.82 -45.17 10.82 21.88 0.24 -44.94 16 23 Si 0.97 43.20 29.58 68.60 2.03 45.23 16 24 H -0.25 -10.10 7.11 99.48 0.71 -9.40 16 25 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 26 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 27 C 0.12 3.94 5.43 86.50 0.47 4.41 16 28 C 0.04 0.80 4.36 86.29 0.38 1.17 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.07 1.60 6.54 -2.39 -0.02 1.58 16 36 H 0.08 1.73 6.19 -2.39 -0.01 1.71 16 37 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.04 1.26 7.62 -2.39 -0.02 1.25 16 39 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.08 2.70 5.16 -2.39 -0.01 2.69 16 41 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.13 4.34 7.39 -2.91 -0.02 4.31 16 43 H 0.13 4.23 8.06 -2.91 -0.02 4.20 16 44 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 45 H 0.11 5.94 6.19 -2.91 -0.02 5.92 16 46 H 0.29 14.43 8.29 -92.71 -0.77 13.66 16 47 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16 48 H 0.06 2.33 7.00 -2.39 -0.02 2.31 16 49 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 50 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -76.24 383.12 0.92 -75.32 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: 0.93 Total: 30.86 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: 5.60 Total: -16.67 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -6.16 Total: -84.35 kcal Atomic # 8 Polarization: -48.92 SS G_CDS: -1.48 Total: -50.39 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -76.24 0.92 -75.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274891897.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.953 kcal (2) G-P(sol) polarization free energy of solvation -76.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds