Wall clock time and date at job start Wed Apr 1 2020 03:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47021 * 110.99897 * 2 1 4 4 C 1.53090 * 109.28350 * 177.59941 * 3 2 1 5 5 O 1.43035 * 109.26051 * 56.85230 * 4 3 2 6 6 C 1.42942 * 113.73252 * 301.43264 * 5 4 3 7 7 C 1.52984 * 109.54209 * 298.53380 * 6 5 4 8 8 C 1.53350 * 109.63004 * 301.17856 * 7 6 5 9 9 C 1.53193 * 109.14419 * 298.78221 * 8 7 6 10 10 N 1.46938 * 108.88789 * 54.63583 * 9 8 7 11 11 C 1.34774 * 120.62796 * 126.25802 * 10 9 8 12 12 O 1.21596 * 119.99695 * 178.68235 * 11 10 9 13 13 C 1.47643 * 120.00443 * 358.67701 * 11 10 9 14 14 C 1.40003 * 119.89423 * 32.39985 * 13 11 10 15 15 C 1.36316 * 120.10710 * 179.76058 * 14 13 11 16 16 C 1.40892 * 119.89013 * 0.51707 * 15 14 13 17 17 C 1.41112 * 120.09916 * 179.71988 * 16 15 14 18 18 H 1.08007 * 119.98970 * 205.50026 * 17 16 15 19 19 C 1.40218 * 120.00765 * 25.50285 * 17 16 15 20 20 N 1.30647 * 119.99831 * 16.84797 * 19 17 16 21 21 Si 1.86800 * 120.00371 * 196.85389 * 19 17 16 22 22 H 1.48495 * 109.47068 * 59.99434 * 21 19 17 23 23 H 1.48504 * 109.47207 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46646 * 299.99778 * 21 19 17 25 25 C 1.40884 * 119.79273 * 359.73952 * 16 15 14 26 26 C 1.36318 * 119.89050 * 359.97438 * 25 16 15 27 27 C 1.46926 * 118.73569 * 306.27920 * 10 9 8 28 28 C 1.47027 * 111.00059 * 236.38800 * 2 1 3 29 29 H 1.08996 * 109.47209 * 183.60979 * 1 2 3 30 30 H 1.08995 * 109.47035 * 303.61863 * 1 2 3 31 31 H 1.09002 * 109.46823 * 63.61209 * 1 2 3 32 32 H 1.09004 * 109.50169 * 297.54206 * 3 2 1 33 33 H 1.09001 * 109.50534 * 57.61551 * 3 2 1 34 34 H 1.08999 * 109.51001 * 176.78406 * 4 3 2 35 35 H 1.09002 * 109.50711 * 296.91668 * 4 3 2 36 36 H 1.08998 * 109.45377 * 61.20195 * 7 6 5 37 37 H 1.08999 * 109.45330 * 181.14372 * 7 6 5 38 38 H 1.09001 * 109.68883 * 178.81730 * 8 7 6 39 39 H 1.09007 * 109.47539 * 58.62009 * 8 7 6 40 40 H 1.08998 * 109.58677 * 294.78350 * 9 8 7 41 41 H 1.08995 * 109.59132 * 174.49299 * 9 8 7 42 42 H 1.07997 * 119.94940 * 0.02562 * 14 13 11 43 43 H 1.08009 * 120.05724 * 180.22976 * 15 14 13 44 44 H 0.96998 * 120.00403 * 180.02562 * 20 19 17 45 45 H 1.07999 * 120.05124 * 179.97438 * 25 16 15 46 46 H 1.07996 * 119.94354 * 179.97438 * 26 25 16 47 47 H 1.08997 * 109.58612 * 173.30148 * 27 10 9 48 48 H 1.09000 * 109.58573 * 293.71575 * 27 10 9 49 49 H 1.08997 * 109.51207 * 62.38414 * 28 2 1 50 50 H 1.09001 * 109.54615 * 302.26684 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3726 0.0000 4 6 3.5249 1.3272 0.0605 5 8 4.0180 0.5583 -1.0402 6 6 3.5245 -0.7828 -1.0720 7 6 3.9663 -1.5209 0.1931 8 6 5.4972 -1.5190 0.2826 9 6 6.0725 -2.2502 -0.9344 10 7 5.5380 -1.6335 -2.1564 11 6 6.3677 -1.1955 -3.1240 12 8 5.9122 -0.7088 -4.1409 13 6 7.8295 -1.3065 -2.9491 14 6 8.3661 -2.3767 -2.2232 15 6 9.7154 -2.4861 -2.0633 16 6 10.5697 -1.5141 -2.6206 17 6 11.9668 -1.6198 -2.4526 18 1 12.5840 -0.7344 -2.4936 19 6 12.5537 -2.8741 -2.2327 20 7 11.8867 -3.9641 -2.5045 21 14 14.2892 -2.9867 -1.5510 22 1 14.3425 -2.3276 -0.2214 23 1 14.6745 -4.4141 -1.4112 24 1 15.2300 -2.3080 -2.4780 25 6 10.0246 -0.4361 -3.3456 26 6 8.6743 -0.3384 -3.5052 27 6 4.0819 -1.5030 -2.3030 28 6 1.9959 -0.7598 -1.1431 29 1 -0.3633 -1.0256 0.0647 30 1 -0.3633 0.5690 0.8557 31 1 -0.3633 0.4568 -0.9206 32 1 1.6827 1.8826 -0.9111 33 1 1.6125 1.9096 0.8677 34 1 3.9217 2.3408 0.0031 35 1 3.8385 0.8653 0.9967 36 1 3.5515 -1.0212 1.0684 37 1 3.6065 -2.5492 0.1578 38 1 5.8124 -2.0263 1.1944 39 1 5.8593 -0.4908 0.2941 40 1 5.7844 -3.3008 -0.8993 41 1 7.1594 -2.1689 -0.9295 42 1 7.7103 -3.1190 -1.7929 43 1 10.1288 -3.3140 -1.5062 44 1 12.2925 -4.8318 -2.3520 45 1 10.6755 0.3115 -3.7743 46 1 8.2555 0.4878 -4.0605 47 1 3.8552 -0.9245 -3.1985 48 1 3.6324 -2.4930 -2.3817 49 1 1.6818 -0.2843 -2.0722 50 1 1.6146 -1.7804 -1.1095 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275540496.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:53 Heat of formation + Delta-G solvation = -30.772917 kcal Electronic energy + Delta-G solvation = -31248.223791 eV Core-core repulsion = 27240.779987 eV Total energy + Delta-G solvation = -4007.443804 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.72395 -39.14484 -37.18847 -36.42062 -35.43277 -33.88970 -32.56593 -31.70748 -30.21318 -29.50575 -29.22656 -27.05991 -26.09161 -24.93105 -24.29227 -22.75397 -22.08625 -21.10968 -20.81455 -19.41314 -18.72387 -17.49890 -16.70743 -16.26415 -16.19151 -15.71190 -15.45434 -15.27042 -15.14610 -14.91902 -14.46073 -14.15990 -13.87982 -13.70610 -13.39858 -13.22064 -12.93371 -12.77214 -12.52182 -12.42826 -12.35688 -12.19855 -12.08588 -12.00261 -11.81419 -11.45638 -11.31296 -11.22840 -11.07771 -10.98683 -10.85504 -10.65549 -10.42930 -10.17993 -9.97166 -9.58190 -9.42330 -9.31792 -8.80883 -8.65884 -8.13729 -7.59731 -7.47053 -6.96699 -4.54699 2.34083 2.96259 2.97367 3.01312 3.02620 3.38597 3.67161 3.69076 3.78249 3.87445 4.52894 4.59355 4.69318 4.72400 4.78064 4.98051 5.06950 5.11425 5.18068 5.22801 5.33699 5.38007 5.42163 5.50994 5.51907 5.55257 5.57557 5.69077 5.76266 5.80726 5.86888 5.90845 6.04658 6.14530 6.20864 6.31938 6.34975 6.46504 6.62264 6.63617 6.80828 6.87761 6.97931 7.09757 7.17717 7.26147 7.47823 7.66459 7.84330 7.89411 8.10641 8.17452 8.44361 8.68830 8.79808 9.08007 9.95890 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023292 B = 0.002532 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.841679 B =11056.861818 C =11318.407656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.537 5.537 3 C 0.017 3.983 4 C 0.059 3.941 5 O -0.357 6.357 6 C 0.109 3.891 7 C -0.133 4.133 8 C -0.132 4.132 9 C 0.076 3.924 10 N -0.608 5.608 11 C 0.581 3.419 12 O -0.570 6.570 13 C -0.272 4.272 14 C -0.082 4.082 15 C -0.175 4.175 16 C 0.127 3.873 17 C -0.448 4.448 18 H 0.083 0.917 19 C 0.075 3.925 20 N -0.777 5.777 21 Si 0.912 3.088 22 H -0.261 1.261 23 H -0.276 1.276 24 H -0.263 1.263 25 C -0.235 4.235 26 C -0.026 4.026 27 C 0.129 3.871 28 C 0.032 3.968 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.026 0.974 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.131 0.869 42 H 0.109 0.891 43 H 0.121 0.879 44 H 0.286 0.714 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.073 0.927 49 H 0.045 0.955 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.427 2.530 9.204 18.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.262 5.262 3 C -0.111 4.111 4 C -0.018 4.018 5 O -0.275 6.275 6 C 0.068 3.932 7 C -0.171 4.171 8 C -0.171 4.171 9 C -0.046 4.046 10 N -0.340 5.340 11 C 0.376 3.624 12 O -0.450 6.450 13 C -0.277 4.277 14 C -0.101 4.101 15 C -0.194 4.194 16 C 0.124 3.876 17 C -0.476 4.476 18 H 0.101 0.899 19 C -0.145 4.145 20 N -0.400 5.400 21 Si 0.736 3.264 22 H -0.186 1.186 23 H -0.201 1.201 24 H -0.188 1.188 25 C -0.255 4.255 26 C -0.046 4.046 27 C 0.005 3.995 28 C -0.097 4.097 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.148 0.852 42 H 0.127 0.873 43 H 0.139 0.861 44 H 0.097 0.903 45 H 0.115 0.885 46 H 0.114 0.886 47 H 0.113 0.887 48 H 0.091 0.909 49 H 0.063 0.937 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.350 2.353 8.934 18.780 hybrid contribution 0.067 0.131 -0.174 0.228 sum -16.283 2.484 8.760 18.656 Atomic orbital electron populations 1.22379 0.87029 1.02359 1.00571 1.62201 1.07955 1.13626 1.42415 1.22825 0.97076 0.89682 1.01495 1.22651 0.91599 0.96531 0.91065 1.88185 1.69590 1.22456 1.47291 1.21869 0.90876 0.83755 0.96657 1.22026 0.96532 1.00552 0.97959 1.21942 0.94829 1.02155 0.98130 1.22735 1.03271 0.95263 0.83320 1.47723 1.04772 1.62137 1.19402 1.18655 0.87049 0.75187 0.81524 1.90630 1.78406 1.47067 1.28938 1.18833 0.90027 1.03240 1.15559 1.20854 0.95689 0.96402 0.97128 1.21010 0.91534 1.02177 1.04708 1.17761 0.93374 0.89991 0.86479 1.19760 0.92726 0.93799 1.41275 0.89926 1.26057 1.00642 0.95218 0.92631 1.69733 1.38687 0.99306 1.32280 0.86286 0.81294 0.78195 0.80600 1.18551 1.20129 1.18757 1.20702 0.93805 1.03203 1.07757 1.20277 0.93123 0.95995 0.95165 1.21321 0.81898 0.99121 0.97196 1.22710 0.95510 0.99393 0.92103 0.91176 0.91275 0.95564 0.94014 0.89850 0.88629 0.92073 0.90527 0.91367 0.91082 0.91007 0.92350 0.85186 0.87317 0.86148 0.90298 0.88461 0.88602 0.88673 0.90875 0.93706 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.60 60.06 0.58 0.76 16 2 N -0.54 -5.20 4.34 -242.62 -1.05 -6.25 16 3 C 0.02 0.17 5.66 -3.71 -0.02 0.15 16 4 C 0.06 0.66 6.61 37.20 0.25 0.90 16 5 O -0.36 -5.33 9.50 -35.23 -0.33 -5.66 16 6 C 0.11 1.40 0.70 -90.54 -0.06 1.34 16 7 C -0.13 -1.54 4.23 -26.56 -0.11 -1.65 16 8 C -0.13 -1.72 5.97 -26.45 -0.16 -1.88 16 9 C 0.08 1.16 4.86 -3.70 -0.02 1.14 16 10 N -0.61 -10.80 2.92 -173.99 -0.51 -11.31 16 11 C 0.58 12.88 7.44 -12.42 -0.09 12.79 16 12 O -0.57 -14.19 16.17 5.28 0.09 -14.10 16 13 C -0.27 -6.32 5.55 -104.73 -0.58 -6.91 16 14 C -0.08 -1.82 7.36 -39.61 -0.29 -2.11 16 15 C -0.18 -4.26 8.63 -39.27 -0.34 -4.60 16 16 C 0.13 3.24 5.57 -106.80 -0.59 2.65 16 17 C -0.45 -11.20 9.05 -37.75 -0.34 -11.54 16 18 H 0.08 1.98 7.91 -52.48 -0.41 1.56 16 19 C 0.08 1.77 5.15 -17.31 -0.09 1.68 16 20 N -0.78 -18.78 10.95 55.56 0.61 -18.18 16 21 Si 0.91 17.42 29.59 -169.99 -5.03 12.39 16 22 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 23 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 24 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 25 C -0.24 -5.75 9.73 -39.27 -0.38 -6.13 16 26 C -0.03 -0.63 9.53 -39.61 -0.38 -1.01 16 27 C 0.13 1.94 5.38 -3.75 -0.02 1.92 16 28 C 0.03 0.34 4.36 -3.73 -0.02 0.32 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.66 6.53 -51.93 -0.34 0.32 16 36 H 0.08 0.86 6.17 -51.93 -0.32 0.54 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 1.07 7.63 -51.92 -0.40 0.67 16 40 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 41 H 0.13 2.24 3.55 -53.97 -0.19 2.05 16 42 H 0.11 2.10 5.29 -52.49 -0.28 1.82 16 43 H 0.12 2.96 6.18 -52.48 -0.32 2.64 16 44 H 0.29 6.25 8.29 -40.82 -0.34 5.91 16 45 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 46 H 0.10 2.23 7.95 -52.49 -0.42 1.81 16 47 H 0.09 1.63 7.01 -51.93 -0.36 1.27 16 48 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 49 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 382.42 15.07 5.76 5.76 Total: -1.00 -29.59 382.42 -10.82 -40.41 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -7.67 Total: 9.13 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -2.67 Total: -12.19 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: -0.95 Total: -35.74 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.25 Total: -19.76 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.03 Total: 12.39 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.59 -10.82 -40.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275540496.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.634 kcal (2) G-P(sol) polarization free energy of solvation -29.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds